Oncorhynchus nerka (sockeye salmon): 115131988
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Entry
115131988 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: protein SOGA1-like
KO
K27704
microtubule cross-linking factor
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
one03036
]
115131988
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
115131988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOGA
SOGA1-2-like_CC
Striatin
Extensin_1
Rsa3
CTD8
Motif
Other DBs
NCBI-GeneID:
115131988
NCBI-ProteinID:
XP_029519992
LinkDB
All DBs
Position
LG7:32962272..33028697
Genome browser
AA seq
1854 aa
AA seq
DB search
MTKTKADVHSPTHFVSPKERRHRHKMESGTENANGGQAQPQQQHQFEQQPVVQSIQVNEK
KKINRAPSPARPKDVPGWSLTKIRGGIGTPTLSVKPGSIHLGSRVSRRSPGSGKETKSEK
GKLPGKSTLSVASAQKSGSKSMKGGRKKVADASNASDDLSKDSGCAAGKLSSTDSSSEIS
DCASEENKLSTEALSSDTESSSRGGGAEGEKPSRDCGDGPPDRGTRGDHHAKTPVDKDRL
SFGVETGEGSISPGDERSLTSFDSRVPASTSLAFSDLTEEFMDGMHEEFVREIEELRSEN
DYLKDEMEELRSEMLEMRDMYMEEDVYQLQELRQQFEQANKTCRILQYRLRKAERRSLRV
AQTGQVDGELIRTLEQDVKVAKDVSIRLHTELDSVEKKRGRLEQENEEMRFRLQELEVAK
QVLQAEMEKQRENSLKKRGARPNNKPEKKLSPQEDSSDLKCQLHFAKEESALMCKKLTKM
AKDSEEMREELAKYRSMYGDVDASLTVEEVNDSPHTREAEVRVHLKLVEEEANLLSRRIV
ELEVENRGLRAEMDDMKGQELPPGLGVGGMGGHGGGGLENVMELQRHLQFVEEEAELLRR
SLLEMEEQNKLLMNEINRYKSELPLASDPDQDDSSSISLLEDSHGGGALISTEAPQEELL
QAARLQIGDLSGKVKKLQYENRVLLSNLQRCDLASYHSSSRPALETDAEAGDSAECLPSQ
AHREGPIGGENEPLEEREKKTSTGFPVPLGLKDRESLLAMRDQARLISTAIQLLTASDSN
CPSISLYRKISSGEAAEPCVPEKSQQAQPSELQDLPLVEALTGRLRALHTQLQAFVERVE
SLGTTPSGRAQVEGASPLPLLSEAGDSVVGAPSASHPCPPDDQAGEIPAEQKQPNFRDQS
ERDAKGQKEEGDSRTDRNQTQETQETDTALQISELQALLSDARETAHGTQEELTLERQAH
RDHTHSTYQTVSQLQEEHQKALTRRDFQLQSLSLQTRLQQKFWSQERNLMVQESHQLKQT
LLLLSLKLRCFLKQWRLGRKLDSEAKDVLEVNSLKDLYLLLEEESLAAHQGDNKMAAAEE
QPLSPSISKELCLLEKSYKQTSGVSSTLADLKGALQDLSGELREERQGSQELTQQFARAK
ASWEVERTELKSLITQLESKLGQAVLAGGEKDLQGPPVLKMALKREREEYPHLLADSYAA
VMDLTKQLQTGERNWSREKLELLEYFSQERGQWEQRLQNKMSLHEKNTSERETATDAVTN
GSNLPRTKSIPSIPELEGLLEACPFLPGQEVNGTANEEGEKDQPNTQAPPLLAHTDLGDL
TRKNWKYLTNEVAMMEQGNAPFKTWDCPSSPSSFLGLGSIQRSYTAPDKTGIRIYYSPPT
MRRMESRLAKEKQDKPQAQQGHLSRASTPSDAGAPEGQPPSPSFASSSSSYDQWLSSLSE
QHRELLENSSGGAGVAPFHGLEISANLSDDMKEMTNCVRQAIRSSSLERKCSKDAGSQTV
GVSSSSTQTAQFVSVGLQTDGLGSRGVGGLHTKSSWSPRPSSSLASARSRHISSSLDKVH
SRIDRPCCSPKYGSPKLQRRISASSSKLDGVGSSSASSRDRSLWNLHQRSSTSSGSAWAR
STTTRDSPVLSGLNDGLSSLFSVVEHSGSVESLWKSEPGVSPARQAAGKPSGPAPDTGAQ
KYGPLQEFLRNVCGRTGTPMPGGGERGQREVGATDEPKPECLSGASLVGNDSVTKIVNKR
FMRQMPREELGANARDPTSRDPTARDPTTRDPTARDPTTRDPTVRDPTVRDPTVRDPTMS
SSIEDAVCDCTSQALTSCFVRPSRSATRHSPGLCIHLSQESPTATEERLDPSIE
NT seq
5565 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagacaaaggctgatgttcattcgccaactcactttgtctcgcccaaggaaagg
agacacaggcacaaaatggaaagcgggacggagaacgccaacggcgggcaggcgcagccc
caacaacagcaccagttcgagcaacagcccgtagtgcagtccatccaagtgaacgagaag
aaaaagatcaaccgggctccgtcacccgctagacccaaggatgtgcctggatggtccctc
accaagatccggggaggcatcggtacaccaacactgagcgttaaaccaggatccatacat
ttaggcagccgggtgtccaggcgtagtccaggtagcggaaaagagaccaaatcagagaaa
ggaaaactgcccgggaaatccacactatcggttgccagtgcccagaagagcggcagtaaa
tcgatgaaaggtggtcggaagaaggtggcggatgcaagcaacgcctcggacgacctgagc
aaagactctggttgcgccgcgggcaagctgtcgtcaacggatagcagttctgagatctcc
gattgcgcctcggaggagaataaactctccaccgaagctctgagtagtgacaccgaatcc
agcagccgaggcgggggggctgagggcgagaaaccgagcagggactgcggagatggacca
ccggataggggtactcgtggtgaccatcatgccaagacccccgtagataaggaccgactc
tcctttggagtggagaccggggaggggagcatttctccgggggatgaacgatctctcacc
tcgttcgacagccgggtgcctgccagcacttccctggctttctccgacctgacagaagag
ttcatggatggcatgcatgaagaatttgtcagggaaatcgaggaactgagatcagaaaac
gattacctaaaagacgagatggaggagctgcgctcggagatgttggagatgagggacatg
tacatggaggaggatgtgtaccagctgcaggagctgaggcagcagtttgagcaggccaac
aagacctgccgcatcctgcagtaccgcctccgcaaggccgagagacgcagcctccgcgtg
gcccagacgggacaggtggacggggagctcatccggaccctggagcaggacgtcaaggtg
gctaaagacgtgtccatccggctgcacaccgagttggactctgtggagaagaagaggggt
cgcttggagcaggagaacgaggagatgaggttcaggctccaggagctcgaggtggccaag
caggtcctgcaggctgagatggagaagcaacgagagaactctctgaagaagcgaggcgct
cggccaaacaacaagccagagaagaagctgtctccccaggaggacagttctgacctcaag
tgccagctccactttgccaaggaggagtcagcgctcatgtgcaagaagctgaccaagatg
gccaaggacagtgaggaaatgcgggaggagctggccaagtaccgttcgatgtacggcgat
gtagacgcctcgctcaccgtggaggaggtcaacgactcgccccacacgcgcgaggccgag
gtcagagttcacctgaagctggtggaggaggaggccaacctgctgagccggcgcattgtg
gaactggaggtggagaaccgcggcctgcgggccgagatggacgatatgaagggccaggag
ctgccaccaggcctgggggtcggcggcatgggaggacatggaggaggaggtctggagaac
gtgatggagctccagaggcacctgcagtttgtcgaggaggaggcggagctgctgcggcgc
tcgctgttggagatggaggagcagaacaagctgctgatgaacgagatcaaccgctacaag
tcggagctgccgcttgcgtcggacccagaccaggacgactcctcgtccatctctctcctg
gaggacagtcatggtgggggggctctgatcagcacagaggccccccaggaggagctgctg
caggccgccaggctccagatcggggatctgagtggcaaggtgaagaagctccagtatgag
aaccgtgtgttgctgtccaacctgcagcgctgcgacctggcctcttaccacagctcttcc
aggcccgccctggagaccgacgcagaggcaggggactcagctgagtgcctccccagccag
gctcaccgcgagggccccatcggaggggagaacgagcccctggaggagagggagaagaag
acgtccactgggtttcctgtccccctggggctgaaggaccgtgaatccctgctagccatg
agggaccaagcccgcctaatctctacagccatccagctgctgactgcctccgactccaac
tgcccttccatctccctctaccgcaagatctcctccggggaggctgcagagccatgtgtc
ccagagaagagccagcaggcccagccctcggagctccaggatcttcccctggtggaggct
ctgacgggcaggctgcgagcactgcacacccagctccaggcttttgtggagcgggttgag
agcctaggcaccaccccctcagggagggcacaggtggagggggcatcccccctgcctcta
ctgtccgaggctggggactctgtggtgggtgcaccctctgcctctcacccctgccctcca
gacgaccaggcgggtgagatccccgcagagcagaagcagcccaactttagggaccaatca
gagcgcgatgcgaaaggtcagaaggaggagggtgacagccgcactgaccgcaaccagacc
caggaaacacaggagacggacacagctctgcagatcagtgagctgcaggcccttctgtcg
gatgcgagggagacggctcacgggacgcaggaggaattgactctggagagacaggcccac
cgagaccacacccacagcacttatcagacagtctcacagctgcaggaggagcaccagaag
gccctgacgcggagggacttccagctgcagagtctgagtctgcagacgcggctgcagcag
aagttctggagccaagagaggaacctgatggtgcaggagtcccatcaactcaagcagacc
ctgctgctgctgagcctcaagctgcgctgcttcctcaaacagtggcgtctgggacgcaag
ctggactcggaggccaaggatgtcctggaggtgaacagtctgaaggacctgtacctgcta
ttggaggaggagagtctggccgcccaccagggagacaacaagatggccgccgcagaggag
cagcccctcagccccagcatctccaaggagctctgcctgctggagaagagctacaaacag
acgagcggcgtgagcagcactctggcggacctgaagggagcgctccaggatctgagcgga
gagctgcgagaggagcgccagggctcacaggaactcacccagcagtttgcccgcgccaag
gcctcctgggaagtggagaggacagagctcaagagcctcatcacccagctggagagcaag
ttgggccaagctgtgctggccgggggagagaaggacctccaaggacctcccgtcctgaag
atggccctgaagagggagcgtgaggagtacccgcacctcctggccgactcgtacgccgcc
gtcatggacctgaccaagcagcttcagacgggcgagaggaactggagccgcgagaagctg
gagcttctggagtacttcagtcaggagaggggccagtgggagcagaggctacagaacaag
atgtctctgcacgaaaaaaacacctccgaaagggaaactgcaacagacgctgttacaaat
ggaagcaatttaccaaggaccaaatccatcccgtccataccagagttagagggtctgctg
gaggcctgtcctttccttccgggtcaggaggtcaacgggacagccaatgaggagggagag
aaggaccagcccaacacccaggcccctccccttctagcccacacagacctgggtgacctc
accaggaagaactggaagtacctgaccaatgaggtggctatgatggagcagggtaatgcc
cccttcaagacatgggactgccccagctcccccagtagtttcctgggcctggggagcatc
cagaggagctacacggcccctgacaagaccggcatccgcatctactacagcccccctacc
atgcgccgtatggagagccggctagctaaggagaagcaggacaaacctcaagcccagcaa
ggccacctgtcccgggcttcaactccgtcagacgctggggccccggagggccagcctccc
tctccctcttttgcctcctcctcttcgtcctacgaccagtggctgagctctctgtccgag
cagcacagggaacttctggagaacagcagcggtggcgcgggggtggcgcccttccacggc
ctggagatctctgccaacctctcggacgacatgaaggagatgaccaactgcgtgcgccag
gccatccgctccagctctctggagaggaagtgcagcaaggacgcgggcagccagacggtg
ggggtgtctagcagctccacccagacagcccagtttgtgagtgtgggactgcagacggac
gggctcgggtctcggggggtggggggcctccacaccaagtcctcctggtccccccggccc
tcgtcctcactggcctcggcacgctcacgccacatctcctcgtccctggataaggtgcac
agccgcatcgacaggccctgctgctcacccaagtacggctcccccaagcttcagcgccgc
atctccgcctcctcctccaagttggacggagtggggtcgtcctcggcttcctcccgggat
cgcagcctgtggaacctgcaccagcgctcctcgacctccagcggctcggcctgggcccgc
tccaccaccaccagggacagccccgtgctcagtggcctcaacgacggcctgtccagcctg
ttcagtgtggtggagcactcaggcagtgtggagtccctatggaagagtgagccgggggtc
agcccagcccgccaggcagcagggaagccctctggccccgcccccgacaccggagcccag
aaatacggtcccttacaggaattcttgaggaacgtatgcggtcggaccgggacgcccatg
cctgggggaggggagagagggcagagggaggtgggggccacggatgagcctaagccagaa
tgcctctctggggcctcgctggtggggaacgacagtgtcaccaagatcgtcaacaagagg
ttcatgagacagatgcccagggaggagcttggggccaatgccagggaccccacctccagg
gaccccaccgccagggaccccaccaccagggaccccaccgccagggaccccaccaccagg
gaccccaccgtcagggaccccaccgtcagggaccccaccgtcagggacccgaccatgagc
tctagcattgaggatgcagtgtgtgattgcacctcccaggctctgacttcctgcttcgtc
cggccctcccgctcggccacacgccattcaccgggcctctgcatccacctctcccaggag
tctccaacggcaacagaggagagattggatccaagcattgagtga
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