Oncorhynchus nerka (sockeye salmon): 115132041
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Entry
115132041 CDS
T07952
Name
(RefSeq) nuclease-sensitive element-binding protein 1-like isoform X1
KO
K09276
Y-box-binding protein 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115132041
03019 Messenger RNA biogenesis [BR:
one03019
]
115132041
03041 Spliceosome [BR:
one03041
]
115132041
Transcription factors [BR:
one03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
Cold-shock domain factors, YB-1/DbpB-like
115132041
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
115132041
mRNA cycle factors
Common to processing body (P body) and stress granule
115132041
Spliceosome [BR:
one03041
]
Common components
Common spliceosomal components
General mRNP proteins
115132041
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CSD
OB_RNB
DUF8529
S1CSD-TOTE-2
Motif
Other DBs
NCBI-GeneID:
115132041
NCBI-ProteinID:
XP_029520097
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All DBs
Position
LG7:34822802..34829045
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AA seq
379 aa
AA seq
DB search
MAGDSPLHSFSFLPVRSATGERKVESPKAAAPTTAGPGYHLAPGNTLESHRRHYQPETMS
SEAETQQPPEPAVDSESPPSPPATASAGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKE
DVFVHQTAIKKNNPKKYLRSVGDGETVEFDVVEGEKGAEAANVTGPAGVPVQGSKYAADR
NRYRRYPRRRGPARDGEYPDNYQSDGEGEGERPPRKSRESAESAPEGEMQPQQRRPPFPG
RRRYPPYFVRRRYGRRPPYTNAPRGEMTEGGEGDENQGGPDQGNKPMRQNYYRGFRPSRG
GGPPRPRPVRDGDGENKENQDGDGENQEPRQRRYRRNFNYRRRRPQTGGKPQDGKEAKTD
GEPSTEKTPAPAAEQGGAE
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atggctggggatagtccactgcatagtttttcgttcctcccagttcgatcggcaacggga
gagaggaaagttgagagcccgaaggcagcagcccccaccaccgccggcccaggttaccat
ctagcaccgggaaatacactagagagccaccgccggcattaccaaccagaaaccatgagc
agcgaggccgagacacaacaaccgccggagcctgctgtggattcggagagcccacccagc
ccgccagctacagcttccgcgggggataagaaggtcatcgcaactaaggttttgggtaca
gtcaaatggttcaacgtcagaaatggctacgggttcatcaacaggaatgacacaaaggaa
gacgtctttgtccaccagactgccataaagaaaaacaacccaaagaaataccttcgcagt
gttggagatggcgaaactgtggagtttgatgtggttgagggggagaagggagcagaggca
gccaatgtgaccggcccagcgggtgtcccagtccaggggagcaagtatgcagctgaccgg
aaccgctacaggcggtacccccgcaggaggggcccagcccgtgacggcgaatacccggac
aactaccagagtgacggcgagggtgaaggagagcgccccccccgcaagagccgcgagagt
gctgagagtgccccagaaggagagatgcagccccagcagcgcaggccccccttccccggg
agacggcgctaccccccatactttgtacgtagacgctacggccgtcggcccccgtacacc
aacgcacctcgcggagagatgactgagggtggcgaaggtgacgagaaccagggaggtcca
gaccagggcaacaaaccaatgagacagaactactacagaggcttccgaccaagcaggggt
ggcggtccaccccgtcccagaccggtgcgggacggcgatggggaaaacaaggagaaccag
gatggtgatggtgagaaccaggagccccgccagcgccgctaccgccgaaacttcaactat
cgccgcagacgcccacagactggcggcaagccccaggatggcaaggaggccaagactgac
ggcgaaccatctacagagaaaacgcccgctcccgcggccgagcagggcggggctgagtag
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