Oncorhynchus nerka (sockeye salmon): 115132107
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Entry
115132107 CDS
T07952
Name
(RefSeq) PR domain zinc finger protein 2-like
KO
K11432
[histone H3]-lysine9 N-trimethyltransferase PRDM2 [EC:
2.1.1.355
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one00310
Lysine degradation
one01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
one00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
115132107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115132107
03036 Chromosome and associated proteins [BR:
one03036
]
115132107
Enzymes [BR:
one01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.355 [histone H3]-lysine9 N-trimethyltransferase
115132107
Transcription factors [BR:
one03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
115132107
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
115132107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2
zf-C2H2_4
zf-C2H2_6
zf-C2HE
zf-C2H2_2
zf-C2H2_jaz
zf-C2H2_ZNF462_1st
Motif
Other DBs
NCBI-GeneID:
115132107
NCBI-ProteinID:
XP_029520221
LinkDB
All DBs
Position
LG7:complement(38261431..38279803)
Genome browser
AA seq
1477 aa
AA seq
DB search
MEDSHTLYISELGDDDNLEEEMEDQELEETHCSLYLMSMETDELADSNTSCQKPEAKSCD
LKQDLGSVSHSATPELPEDPDHDPDVELQDSFPCQFCERNFTSKQGLERHIHIHTLANHH
THIFKCKYCSKSFGSKIGRRRHERRHENAKARPGSLIKPVEPPSSALQRNGPECVSSPSS
SSASVLADREQASTSDEHGELQGGHTCKYCKKIFSTHTNMRRHQRRIHERHLRLKGKEAP
LLQEAKHPKLPPIKSQQDTNNTSPVAVLEIESDQEEQYMLDISGNISENLSFYIDGKIVS
TSTVGGCEVVEVNSGSATLVGLNAVIINPAQISQALKVETATHTGKGIPGQPLTKRRTAT
PPLLPQIKTELESEVLSSSSSIVSSLIESLIPQNTESTILQRERTVYLSPKLKQLLQMQD
GLKPSFALITEGQKLCSPLSLTVLPAGLGRFKRRTGSPPNSPQQSPMSNVESTTTDVGVS
IAVNAPTSESQCSSPACSLSSNDESEISNSPPVNDAMTTRVLPEGWPPMSGGCSCNQQPL
DLSNAVKKSEDEALREAVLDLSVHRKSADSEAKRILVPQPLNKKRKPNTSMLEKVLMNEY
ANLEVAAEQELSILENHDAPLVTDFAIVTASDMSPATEGEVFGLTFPSAALSPSPSSLAS
VTRQSISPCTIALASPSPHPILPTAPSLITVLAPPTSSSSNSTNQSILQVLASKISPNPL
IICTEDSLNSAACEWRAALPDWATSNSASQLAISKPLDPTLNLQGHVFLTDHTLNQIALN
TTTVESNIGFEVPTCSPALTLNDSLINSFDITSNTVLIECTVALETPENLVPTTIDFQEN
NFESTASAQIVINQQRPLSLSHETVDPSILVSSLEQSVTRSTLSAVISECPTRQESISSP
VPAIIKTESNQKVVSEDISICPSKTPPPSEGTSQVEESSNETLSKLQETFTKEFICNVCD
KLFHSMKELGHHVSEHSDEWPYKCEFCVLLFGKPTALLDHRSTLHGVGKSYVCCACTKEF
AYLCNLKHHQKELHPGQECKYTEEENGKLRPQNYNNATKGSTEALSYCTMAESNKPVIKD
EGELDDATEELFTTIKIMASEGGKPKGLDVCLGINQHYPSFKPPPFPYHNRTPVGSVASA
TNFTTHNIPQTFSTAIRCTKCGKSFDNMPELHKHILACANASDKRRYTPNKNPIPLRHFA
KAQNGVLSSTNSTNGQNALHTASQTNRPKLNQEPPAKLKLNALNKRKKQLVQRAISQRSK
STSLTKKTSSLVNEEQEIYVCPHCIREFTYRRSRTKHMAVCPRKPAAKEAKKRKDGSISY
TKENNGHLRREVLHLEEKSDHEQKSRAHSSSPTKRTAILPAHKVLSNKKSKAIIAMASVQ
TPQEAPKLTALSLVHPFNSPQRQGSRMQHGVKEIRSNITMVKSHQQPPQVDEHPCSQSGR
VRGPVTRSLQQIVVIDSAKEEQLTSQEPPGDLQDPSI
NT seq
4434 nt
NT seq
+upstream
nt +downstream
nt
atggaagactctcacactttatacatctcagagttgggagacgatgacaatttagaggag
gagatggaggatcaggagcttgaggaaactcactgcagtctttatttaatgtccatggaa
actgatgagctggcagattcaaacacaagttgccaaaaacctgaggccaaaagctgtgac
ctgaagcaggatttaggatcggtctcccattcagcaacccctgagctcccagaggatcct
gaccatgaccctgatgtagagctccaggactcatttccctgccaattctgtgaaagaaat
tttaccagcaagcaaggcttagaacgtcacatacacatccacaccttagctaaccaccac
acacacatatttaagtgtaagtactgcagcaagtcctttggctcaaaaattggccggcga
cggcatgagaggagacatgaaaatgcaaaggcaaggcctggatctttaataaagcctgtg
gagcctccaagttctgccctacagcgcaacggtccagaatgtgtgtcttctcccagtagc
tccagtgcctctgttttggcagacagagaacaggcgtctacgtcagatgaacatggagaa
ttacagggtggtcacacttgcaagtattgcaaaaagatttttagcacgcatacaaacatg
cgacgacatcagcgcaggatccacgagcgccatctccggctcaaaggtaaggaagcccca
ctgttgcaggaagcaaaacatccaaagctaccccctattaaatctcaacaggatacgaac
aacacaagcccagtagcagttcttgagatcgaaagtgaccaagaggagcaatatatgctg
gatatctctggtaacatctctgagaacctcagcttttatatagatgggaagattgtatca
acaagcactgtcggcggctgtgaggtagttgaagtgaactctggatctgctactttagtc
ggactaaatgctgtgattattaatcctgcccagatcagtcaggctcttaaagtagagact
gcaactcacacaggaaaagggatacctggtcaacccttgacaaaaaggagaactgccaca
ccacctcttctaccccaaatcaaaacggaactagaatcggaagttttgtcctcttcatca
tcaattgtgtcatctttgatagaaagtctcattcctcagaacacagagtctactatcctt
cagagagagagaacagtgtatctgtcacctaagctgaaacagctcttacagatgcaagat
ggcctcaaacccagctttgccctgatcacagaaggccagaagctgtgttcaccactttcc
ctgactgtccttccagcaggattggggaggtttaaaagaaggaccgggtctcccccaaac
tcaccacaacaaagccctatgtcgaatgttgaaagcacaacaaccgatgtgggtgtttct
attgctgtcaatgccccaacgtcagagagccaatgcagttcacccgcatgcagtttatcc
agcaatgatgagagtgagatctccaacagtccaccagtaaacgatgcaatgacaactcgt
gtcttgccagagggatggcccccaatgagtgggggttgttcctgcaaccagcaacctttg
gacctctcaaatgctgtcaagaaaagtgaagacgaagccctgcgggaagctgtgttggac
ttgagtgtgcacagaaagagtgcagattcggaagcaaagagaattttagttccacagccc
ttaaataaaaagaggaagccaaacaccagcatgttggagaaggtgctgatgaatgagtac
gcaaacctagaggttgctgcagagcaagaattaagtatattagaaaatcatgatgcaccg
ttagttacagactttgccatagttactgcttcggatatgtcacctgctactgaaggcgag
gtgttcggattaacttttccctctgcagcacttagtccatccccttcctctctagcttca
gtcaccaggcaatcgatctcaccatgcaccatagcacttgcttccccatctccacatcca
atcttacccactgctccgtcgctaattactgttttagcaccaccaacatcttcctctagc
aattccacaaatcaatctatccttcaagtattggcctctaaaatatctcctaatccttta
ataatctgcacagaagattcattgaattcagctgcgtgtgagtggagagctgctttgcca
gattgggctacctctaattctgcaagccaacttgccatctctaaaccccttgacccaact
ctcaatctacaagggcatgtgtttctcacagatcacactttaaatcaaatagctctgaac
actaccacagttgaatccaacattggatttgaagtgccaacatgctctccagctttaact
ctaaacgattcccttatcaactcctttgacattactagtaatactgttttaattgaatgc
acagttgctcttgaaaccccagagaaccttgtccctaccacaattgatttccaagagaat
aattttgaatccacagcatctgcgcaaattgtcataaatcagcagcggcctctgtccttg
tctcatgaaaccgttgacccttctattttagtatcttctttagagcaatcggttacccgt
tcaacgctgtctgcagtcatatctgaatgtccaactcgtcaagaatccatttcctcccct
gttcctgccattattaaaactgaatcaaaccaaaaggtagtatcagaggacatatctatc
tgcccctctaaaacgccacctccctctgagggcacaagtcaagtggaagaatcctcaaat
gagaccctctccaagctacaagagactttcactaaggaattcatatgcaatgtatgtgat
aagctttttcattcaatgaaggaactgggtcatcatgtaagtgagcattctgatgaatgg
ccatacaaatgtgagttctgtgtgctactctttggaaagcccacggcattgcttgatcac
aggtcaaccctccatggcgtcggcaagagctatgtttgctgcgcgtgtacaaaggaattt
gcttatctttgcaacctgaaacatcatcaaaaggagttgcaccctggccaggaatgcaaa
tacacagaggaagaaaatggcaagctacgaccccagaactataacaatgcaacaaaaggt
agcacagaggcattgtcctactgtaccatggcagagtccaataaacctgtcataaaagat
gagggagaattagatgacgctactgaggaactctttaccacaataaagataatggcttct
gagggaggcaaacccaaaggcctggatgtttgccttggcatcaaccaacactatcccagt
tttaagccgcctccgtttccatatcacaaccggacacctgttggctctgtagcctcagct
accaacttcaccacccacaacatcccacaaaccttcagcactgctatccgatgcactaaa
tgtggcaaaagctttgataacatgccagagctgcacaaacacattcttgcctgtgcaaat
gccagtgacaaaagacgctacacacccaataagaaccccattcctcttcgtcactttgca
aaagcccaaaatggagtactgtcctctactaattccacaaatggccaaaatgctctacac
acggcaagtcaaacaaatcgtcccaaactcaatcaggagccacctgccaagttgaagctt
aatgcactcaacaaaaggaaaaaacagctggtacagagggccatttcacagaggagtaag
tccacctctttgacaaagaaaacctcttctctagtcaatgaggagcaagagatctatgtc
tgtccgcattgcattagagaattcacataccgccgcagccggaccaagcacatggccgtc
tgccccaggaaacctgctgccaaagaggccaagaaaagaaaagatggcagtatctcttac
actaaggaaaataacggccaccttcgcagagaagtccttcatttggaagagaaatctgat
catgaacagaaaagcagggcccatagttcaagtccaacaaagaggacagccatattacca
gctcataaagtcctgtcaaacaaaaaaagcaaagccatcattgcaatggcaagtgtccaa
acaccgcaggaggcacccaaactgactgcactgtctcttgttcaccctttcaactcccca
caacgtcaaggcagtaggatgcagcatggtgtgaaggaaattcgttctaacattacaatg
gtgaaatcccaccaacaaccaccacaggtggatgagcacccctgcagtcagagtggaagg
gtgaggggaccagtgacccgcagtctacagcagattgtcgtcatagattcagcaaaggaa
gaacagctgaccagtcaggagccaccaggggatctgcaggatccttccatttga
DBGET
integrated database retrieval system
