Oncorhynchus nerka (sockeye salmon): 115132205
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Entry
115132205 CDS
T07952
Symbol
clstn1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
one04515
]
115132205 (clstn1)
Cell adhesion molecules [BR:
one04515
]
Cadherins
Cadherin related
115132205 (clstn1)
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Ortholog
Paralog
GFIT
Motif
Pfam:
CLSTN_C
Ig_CLSTN
Cadherin
CDC45
Laminin_G_3
FAM176
Laminin_G_2
Toxin_R_bind_N
Cadherin_pro
Neur_chan_memb
V_ATPase_I
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
115132205
NCBI-ProteinID:
XP_029520446
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All DBs
Position
LG7:complement(43361604..43427491)
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AA seq
984 aa
AA seq
DB search
MQIRRYKHFASVVGLVLGLLCAVEAAKVNKHKPWIETTYHGIVTENDDKVLLDPPLIALD
KDAPLRYAESFEVTFTKEGEICGFRIHGQNVPFEAVVLDKSTGEGVIRAKDKLDCELQKE
HTFTIQAYDCGEGPDGANMKKSHKATVHIQVNDINEYSPVFKEKSYKATVIEGKKYDSIL
KVEAVDADCSFQFSQICSYEIVTPDVPFTVDKDGFIKNTEKLNYSKERMYKLTVTAYDCG
KNRASEDVLVKINIKPTCKPGWQGFNKRIEYEPGTGSLALFPSMHLETCEEPITSIQANI
ELETNHIGKGCDRDTYSEKSLHKLCGASAGTVELLPAPSSSANWTVGLPTDNGHDSDQVF
EFNGTQAIKVPEGVVSTSLKEPFTVSVWMRHGPGAREKETILCNSDKTEMNRHHYSLYVH
NCHLILLLRQDPAETENYKPAEFHWKLDQVCDKEWHHYVLNVEFPSVALFVDGATFEPFL
VTEDYPLHSSKIDMQLTIGACWQDNPGHDKDNETVSEPSTGGNARMSQFFRGNLAGLMIR
SGKLENKKVIDCLYTCKEGLDVQLPEEVASAVKVAFNPNQSSLTVEGDDIEAFDKVMQHI
SYLNSRQFPTPGIRHLRVSTTVKCFNEETCILIPEAAGYVMVLQPEEPKISLSGIDHFAR
GAAEFESPEGVTLFPELRIVSTITREVEAETEPEATEGAEGAEDDPTVQETVVSEEIMHN
LDTCEVTALGDELDGEHETLEVDQAQVQQRGLEMTSSNLGLVLTGVNTMANYEQVLHLIR
YKNWHTEALFDRKFKLFCSELNGRYISNDFKVEVSVIHTANPMDHANNAMVQPNFINPVH
HASVDLSGHNLVNAHQASVVPSAATIVIVVCVSFLVFMIILGVFRIRSAHQHTMRDTEGG
KENEMDWDDSALTITVNPMETYEDQHSSEEEEEEEEESEEGEEEDDITSAESESSEDEEA
GEPEDQQGASRQQQLEWDDSTLTY
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcagaaggtataaacattttgcatccgttgtcggactggtcctcggactatta
tgtgcggtggaggcagctaaagttaataagcacaagccatggatcgagacgacgtatcat
ggcatcgtaacagaaaatgacgacaaagtacttctggaccctccacttatcgccctggac
aaagacgccccactgcgctacgcagaaagttttgaggtgaccttcaccaaagaaggtgag
atttgtggcttcaggatccatgggcagaatgttccctttgaggcagtggtcctggacaag
tccacgggtgagggagtcattcgagctaaggacaagctggactgtgaactccagaaggag
cacaccttcaccatccaggcctatgactgtggagagggccccgacggagccaacatgaag
aaatctcacaaggccactgtccacatccaagtgaacgacatcaacgagtattccccagtg
ttcaaggagaagtcctacaaagccacggtcatcgagggtaagaagtatgacagcatcctg
aaggtggaggcagtggatgccgactgctcattccagtttagccagatctgcagctacgag
atcgtcaccccagatgtacccttcactgttgacaaggacggcttcatcaagaacacagag
aagctgaactacagcaaagagcgcatgtacaaactgacggtgactgcctacgactgtggg
aagaaccgcgcctcagaagatgtgctggtcaagattaacattaagcccacctgcaagccc
ggctggcaaggtttcaacaagaggattgagtacgagcctggcacaggcagtctggccctt
ttccccagcatgcacttggagacctgcgaggagccaatcacctccatccaggccaacatc
gagctggagaccaatcacatcggaaagggctgcgaccgagacacctactctgagaagtcc
ctgcacaagctatgcggcgccagcgccggcacggtggaattactgcctgcaccaagcagc
tctgccaactggacggtgggtctgcccacagacaatgggcatgacagcgaccaggtgttt
gagttcaatggcacgcaggccatcaaggtgcccgagggtgtggtgagcaccagcctgaag
gagcccttcaccgtctctgtgtggatgaggcacggccccggggccagggagaaggagacc
atcctctgtaactcggacaagaccgagatgaacagacaccactactccctctatgtccac
aactgtcacctcatcctgctgctgcgtcaggaccccgcagagacggagaactacaaacca
gcggagttccactggaaactggaccaggtgtgtgacaaagagtggcaccactacgtgctg
aacgtggagttcccctccgtggctctctttgtagacggggccaccttcgagcccttcctg
gtcaccgaagactaccccctgcactcctccaagatcgacatgcagctcactatcggcgcc
tgctggcaagacaacccaggacatgacaaagacaatgagacagtctctgagccttccaca
ggcggcaatgctcgcatgtcccagtttttccgggggaatctggccggcctgatgatccga
tcgggaaagctggagaacaagaaggtgatcgactgtctttatacctgcaaggagggcctg
gatgtgcagctgcctgaggaggtggcctcagccgtcaaggtggcattcaaccccaaccag
tcgtcgctgaccgtggaaggcgatgacattgaggctttcgacaaggtcatgcagcatatc
tcctacctgaactcacgccagttccccacccccggcattcgacacctccgcgtctccacc
accgtcaagtgcttcaatgaggagacgtgcatcttgataccggaagcggcgggatacgtg
atggtgctacagcccgaggagcccaagatcagcctgagtggcatcgaccactttgcccgc
ggcgctgcagagtttgagagccccgagggcgtgactctgttccccgagctgcgcatcgtc
agcaccatcacccgcgaggttgaggctgaaaccgagccagaggccacagagggggcagag
ggggcagaggatgaccccacagttcaagagactgtagtgtcggaggagatcatgcacaac
ctggacacatgtgaggtgactgcgctgggcgatgagctagacggagagcatgagaccttg
gaggtggaccaggcccaggtccagcagcgcggcctggagatgacctcctccaacctgggt
ctcgtcctgacaggcgtcaacaccatggccaactatgagcaggtcctgcacctgattcgc
tacaagaactggcacacagaggctctctttgacaggaagttcaagctgttctgctccgaa
ctcaacggccgctacatcagcaacgacttcaaggtcgaggtcagtgtgatccacacagcc
aaccccatggaccatgctaataatgccatggtgcagcccaatttcatcaacccagtgcac
cacgcctctgtggacctgtccggacacaacctggtcaacgctcaccaggcttcagtggtc
cccagtgccgccaccatcgtcattgtggtgtgtgtcagcttcctggtgttcatgatcatc
ctgggcgtgttccggatccgatcagcccaccagcacaccatgagggacacagagggcggc
aaggagaatgagatggactgggatgactcggccctcaccatcacagtcaaccccatggag
acttatgaggaccagcacagcagtgaggaggaggaagaagaagaggaggagagcgaggaa
ggtgaggaggaagatgacatcacaagtgctgagtcggagagcagcgaggatgaggaggcc
ggagagccagaggaccagcagggtgccagcagacagcagcagctggagtgggacgactcc
acactcacctactaa
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