Oncorhynchus nerka (sockeye salmon): 115132426
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Entry
115132426 CDS
T07952
Name
(RefSeq) ATP-dependent RNA helicase DDX19A-like isoform X1
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
one03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115132426
03015 mRNA surveillance pathway
115132426
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115132426
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115132426
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
115132426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
115132426
NCBI-ProteinID:
XP_029520921
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Position
LG7:52660620..52676568
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AA seq
508 aa
AA seq
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MATDSWALAVDKQESTTDSFGSLVIRSPPRGGGDAAPRKAKGTTKQVENGTKVEEKEDKA
SQSLLNKMIHTSLVNTTNQVEVLQRDPKSPLYSVKTFEELRLKDELLRGVYDMGFNRPSK
IQENALPMMLAEPVYYPSGSRPQNLIAQSQSGTGKTAAFALAMLSHVDPANKWTQCLCIA
PTYELALQTGKVIEQMGKFYPEVKLAYAIRGNKLDRGTKLQEQIVIGTPGTVLDWCSKLK
IIDPKKISVFVLDEADVMIATQGHQDQSIRIQRMLPNECQMLLFSATFEDSVWKFAERVV
PDPNIIKLKREEETLDTIKQYYVLCNDKDEKFTALCNIYGAITIAQAMIFCHTRRTAGWL
SAELTKEGHVVALLSGEMTVEQRAAIIERFREGKEKVLVTTNVCSRGIDVEQVSVVINFD
LPIDKDGNADNETYLHRIGRTGRFGKRGLAVNMIDSKHSMNILNQIEEHFSTFLSLYQLI
TTLYILIYISVLISNLTFRLVFSTQIRR
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggctactgactcctgggctctggctgtcgataaacaggaatctacgactgactctttc
ggctccttggtgataagatccccacctcgaggtggaggtgatgctgcacctagaaaggca
aaaggtaccacaaaacaagtggagaatggcaccaaagtggaagaaaaagaggacaaagcc
tcccagtcgttgttgaataagatgatccacaccagccttgtgaacactaccaatcaagta
gaggttcttcagagggatccaaaatctcctctttactcggtcaagacatttgaagagctg
agactgaaagatgagctgctaagaggtgtgtatgacatgggtttcaacagaccctctaag
atccaggagaatgccctgcccatgatgctggcagagcccgtgtattatccctctggttcc
agacctcagaacctgattgcccaatcacagtccggcacaggtaaaacagctgcctttgcg
ctggccatgctcagccatgttgacccagctaacaaatggactcagtgtctttgcattgcc
ccaacgtacgagctagctttgcagactggtaaagtcattgaacagatggggaaattctat
cctgaggtcaaattggcatatgccattcgtggcaataaattggaccgagggacgaagctt
caggagcaaattgtcatcgggacacctggcacggtccttgactggtgctccaaactgaaa
atcatcgaccccaagaagatcagcgtcttcgtcctggacgaggctgacgtcatgattgcc
acacaaggtcaccaggaccagagcatccggatccaaagaatgttgccaaatgaatgtcag
atgctgctgttttcagccacgtttgaggactcagtctggaagtttgcagagagagttgtg
ccagaccccaacatcatcaagttgaaacgtgaagaggagactctggacaccatcaagcag
tattacgtgctctgcaatgataaggacgagaagttcacagccctctgtaatatctacgga
gccatcaccatcgcccaggctatgatcttctgtcacacccgaaggacagctggctggctg
tctgctgagctgaccaaagagggccatgtggtggcactgctgagtggggagatgactgtt
gagcagagagcggccatcattgaacggttcagggagggcaaagagaaagtcctagtgacc
accaacgtatgctccagaggcattgatgttgagcaagtttccgtggtgatcaactttgac
ctgcccatagacaaagacggaaacgctgacaacgagacataccttcaccggattggccga
acaggacgtttcggcaagagggggcttgccgtcaatatgattgacagcaaacacagcatg
aacattctcaaccaaatcgaggagcatttcagtacatttctgtctctataccaattaatt
acaacattgtatatattgatctatataagtgttctcattagtaacctaacctttcgtctc
gttttttccacacagataagaagataa
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