Oncorhynchus nerka (sockeye salmon): 115132564
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Entry
115132564 CDS
T07952
Symbol
abcd1
Name
(RefSeq) ATP-binding cassette sub-family D member 1
KO
K05675
ATP-binding cassette, subfamily D (ALD), member 1 [EC:
7.6.2.4
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one02010
ABC transporters
one04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
115132564 (abcd1)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
115132564 (abcd1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
one02000
]
115132564 (abcd1)
Enzymes [BR:
one01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.4 ABC-type fatty-acyl-CoA transporter
115132564 (abcd1)
Transporters [BR:
one02000
]
ABC transporters, eukaryotic type
ABCD (ALD) subfamily
ABCD1 subgroup
115132564 (abcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane_2
ABC_tran
AAA_21
Rad17
AAA_29
AAA_23
Dynamin-like_hel_bact
SMC_N
Adeno_IVa2
ORC-CDC6-like
AAA_5
Motif
Other DBs
NCBI-GeneID:
115132564
NCBI-ProteinID:
XP_029521172
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All DBs
Position
LG7:complement(58233173..58269499)
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AA seq
781 aa
AA seq
DB search
MLVMYEKLPEQLKKTSHARKAVILLVAAYGIKKLYPYLWAKLRKNVGGTPLPVPPINSNG
VLLEGSEKQGKKKSSNSPAVNQEFLKRLSHLLRILFPQLFCKELGLLGFHSLALISRTFL
SIYVANLDGMIVKTIVKKDPQAFVWELTKWLLIAVPATFVNSAIRYLEGQLALAFRTRLV
THAYKLYFSNQTYYRVSNMDGRLANPDQSLTEDMVMFAGSVAHLYSNLTKPCLDVVVTCY
TLLRTAESKGANTTWPSVIAGVVVAITAKVLRMFSPRFGKLVVEEARRKGELRYMHSRII
ANSEEIAFYGGHKVEMSQLQRSYRSLSSQINLILFKRLWYVMLEQFLMKYLWSASGLVMV
AVPIITATGYSRYDSEDVKQLAMNLKEEDLVSERAQAFSTARNLLNSAADAVERIMSSYK
EVTELAGYTARVHEMFTVFEDVRAGVFRRSAEGGDEQTGGGTQLVQHGMRVEGPIMMRGQ
VIDVEKGISCENLPIITPTGDVVVSSLNIKVEEGMHLLITGPNGCGKSSLFRILSGLWPV
YGGVLYKPPPQNMFYIPQRPYMSVGTLRDQLIYPDTEIEMEERGFTDQQLEGILGTVNLV
YILEREGGWSAESDWKDVLSGGEKQRIGMARMFYHRPKYALLDECTSAVSIDVEGKIFQA
AKDAGIALLSITHRPSLWKYHTHLLQFDGEGGWRFERLDASTRVSLQDEKQKLESQLSGI
PKMQQRLSDLCRMLGEDATLSGTGGEEAGEEEKLEEKEAGEDEKLEEEEAGEDEKLEEEE
E
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgttggtaatgtatgaaaagcttcccgagcaactcaagaaaacctcccatgccagaaaa
gcagttatccttctcgtcgctgcctatggaatcaagaaactctacccgtacttatgggct
aaactcaggaagaatgtcgggggtacaccgctcccagtcccccccataaactctaacggg
gtgctactggaggggtcagagaaacaaggaaagaagaaaagtagtaactcgccggctgtg
aaccaggagtttctgaagaggctaagtcacctgcttcgtatcctgtttccccagctgttc
tgtaaggagttgggtctgctggggttccactccctggctctcatctccagaaccttcctc
tctatctacgtggccaacctggacggcatgatagtgaagaccattgtgaagaaggacccc
caggcgtttgtgtgggagttgacaaaatggctgctcattgctgtcccggccacctttgtg
aacagcgccatccgttacctagagggacagctggcactggccttccgcacgcgcttggta
acccacgcctataagctctacttcagcaaccaaacatactaccgcgtcagcaacatggac
ggacgcctcgccaacccagaccagtctctgacagaagacatggtgatgtttgctggatct
gtggcccacctgtactccaacctgaccaagccgtgtctggacgtggtggtgacctgttat
accctcctcaggacagcggagtctaaaggagccaacaccacctggccctccgtcatcgcc
ggcgtggtcgtggcaatcaccgccaaggttctgaggatgttttcgccgcggtttggtaaa
ctagtggtggaagaagcccggaggaaaggagagttgaggtacatgcactcgcgcatcatc
gccaactcggaggagatcgccttctacggaggacacaaggtggagatgtcccagctgcag
cggtcctaccgctccttgtcgtcccagatcaacctgatcctgtttaagcgtctgtggtac
gtgatgctagagcagttcctgatgaaatacctgtggagtgcctcgggactcgtcatggtg
gctgtaccaatcatcaccgccacagggtactcccgatatgactccgaggatgtgaagcag
ttggccatgaatttgaaagaggaggacctagtgagtgagagggctcaggccttttccacc
gctcggaacctcctcaactccgccgcagacgccgtcgagagaatcatgagctcttataag
gaggtgactgagctggctggctacacagcccgtgtgcacgagatgttcactgtgttcgag
gacgtgcgtgcgggcgtgttccgtcgctctgcggagggaggagatgagcagacgggggga
ggaacacagctggtgcagcacggcatgagggtggagggaccaatcatgatgcgaggtcag
gtgatagacgtggagaagggcatcagctgtgagaaccttcccatcatcacaccgacagga
gacgttgtcgtgtccagcctcaacatcaaggtggaggaaggtatgcatctgttaataaca
ggacctaacggctgtgggaagagttctctgttcaggatcctcagtggtctgtggccagtc
tatggaggggtcctttataaaccacctccccagaacatgttctacatacctcagaggccg
tacatgtcggtgggaaccctgcgagaccagttgatctacccagacaccgagatcgagatg
gaggagagaggattcacggaccagcagctagaggggatcctcggaaccgtcaacctggtc
tacatactggagagggaaggcgggtggagtgcagaaagcgactggaaggatgtgttgtca
ggaggagagaaacagaggattgggatggcacggatgttctaccacaggcctaagtatgcc
ctgctagacgagtgtaccagcgctgtcagcatcgacgtggaggggaagatcttccaggca
gcaaaggatgctgggatagcactgctgtcgataacccatagaccctccctctggaagtac
cacacccacctgcttcagttcgacggagagggtggttggcgctttgagaggctggacgcc
tccacccgtgtctctctccaggatgagaaacagaagctggagtcccagctctctgggata
cccaagatgcaacagcgcctgtcggatctctgccgcatgctgggggaggacgccaccctg
tcaggaaccggaggagaggaagcaggggaggaggagaaactggaggagaaggaagcaggg
gaggatgagaaactggaggaggaggaagcaggggaggatgagaaactggaggaggaggaa
gagtga
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