Oncorhynchus nerka (sockeye salmon): 115132957
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Entry
115132957 CDS
T07952
Name
(RefSeq) periodic tryptophan protein 1 homolog
KO
K14791
periodic tryptophan protein 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
one03009
]
115132957
Ribosome biogenesis [BR:
one03009
]
Eukaryotic type
90S particles
Other 90S particles
115132957
Pre-60S particles
Other pre-60S particles
115132957
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_RIG_2nd
WDR55
EIF3I
Beta-prop_WDR3_2nd
Beta-prop_EIPR1
Beta-prop_EML_2
WD40_RFWD3
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
Beta-prop_EML
WD_LRWD1
Beta-prop_WDR41
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
Beta-prop_Aladin
ANAPC4_WD40
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
Beta-prop_ACSF4
Beta-prop_SPT8
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
115132957
NCBI-ProteinID:
XP_029521568
LinkDB
All DBs
Position
LG8:1089469..1097401
Genome browser
AA seq
491 aa
AA seq
DB search
MSSQITCVGWVKRGVSKETPDKVELSKEELQHIIAEAKEQLGERVGEEEEEDEGMASGQE
QSDEAEAVQEPEQDENEAGREEADELATYGLDRYDEEDSVTTNLGDSLAGLTVFSTNEED
PYITIKDTDQYEREDFQIKPNDNLIISGRAEKDCCNLEIHVYNSEEESLYIHHDILLPAY
PLCVEWLNFDPSPEGTGNYAAVGNMTPQIDVWDLDVVDCLEPAFTLGSKKASKKKKKSKK
AAAEPVEGHTDAVLDLSWNKLVRNVLASGSADETVILWDLAQGKPATTLRRHTDKVQTLM
FHPFEAQTLISGSYDKSAILYDCRSPDSSHRTWRFSGQVERVAWNHFSPCNFLASTEDGF
VYCLDARSDKPVFTLRAHDGEVSGLDLSSQIRGCLVTSSADKHVKIWDILGNKPNLVHTR
DMKMGVLFCAACCPDMPFVYAFGGQRDGLRVWDISDVAAVAEVFGNRERLVATTAPEASS
STSSTADMELS
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgagttctcaaatcacttgtgttggatgggtaaagcgtggcgtttcgaaggaaacacca
gataaggtggagttgagcaaagaagaattgcaacacataatagcagaggcaaaagaacaa
ttgggtgaacgtgtaggtgaagaggaggaggaggatgaaggcatggccagcgggcaggaa
cagagtgacgaggcagaagctgttcaggagccagagcaagatgaaaatgaagcaggaagg
gaggaagcagatgaactagcaacgtatggtttggatagatatgatgaggaagactctgtg
actaccaaccttggtgacagccttgccggcctcacagtgttcagcaccaatgaggaggat
ccttacattaccatcaaagacacagaccagtatgagcgagaggactttcaaatcaagccc
aatgataacctcatcatttcaggcagagcagagaaggactgctgcaacctggagattcac
gtatacaactccgaggaggaatccctctatattcaccatgacatactcctaccagcctat
ccactgtgtgtggagtggcttaactttgaccctagtccagaaggcactggaaattatgcg
gctgtaggcaacatgacaccgcagattgacgtgtgggacctggatgtggtggactgccta
gagcctgccttcactctggggagcaagaaggcctccaagaagaaaaagaaaagcaaaaag
gctgcagcagagccagtggaaggtcatacagatgctgtactggacttatcctggaacaaa
ctggtccgcaacgtcttggctagtgggtcagccgatgaaaccgtgatcctgtgggatctg
gcacagggaaagccggccacaacactgcgcagacacactgacaaggttcagacattgatg
ttccacccctttgaagctcagaccctgatatcaggatcatacgataagtcggcgatcctg
tatgactgccgcagcccggacagcagccatcgcacttggaggtttagcgggcaggtggaa
agggtcgcctggaaccacttctcgccctgcaacttcctggcgagcacagaggacggcttt
gtttactgtttggacgcacgctcggacaagccagtgtttacgctaagggcacatgacgga
gaggtgtcaggcttggaccttagcagccaaatccggggatgcttggtcacctcgtcagca
gacaaacacgtcaagatttgggacatcttggggaacaagcccaatttagttcacacccgg
gacatgaaaatgggggtgctgttctgtgcagcgtgctgtcctgacatgccctttgtatat
gcctttggaggacagagggatggcctgcgggtttgggacataagtgatgtggcagcagtc
gctgaggtgtttggcaatcgggagcggttggtggcaaccacagcgcctgaggcatccagc
agtacttcctccacagcagatatggagctttcctag
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