Oncorhynchus nerka (sockeye salmon): 115133193
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Entry
115133193 CDS
T07952
Symbol
tbc1d4
Name
(RefSeq) TBC1 domain family member 4 isoform X1
KO
K17902
TBC1 domain family member 4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115133193 (tbc1d4)
Membrane trafficking [BR:
one04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
115133193 (tbc1d4)
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
115133193 (tbc1d4)
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Rab associated proteins
115133193 (tbc1d4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RabGAP-TBC
RabGap-TBC_2
DUF3350
PID
DUF4600
DUF4249
Spc42p
IRS
zf-C4H2
TMPIT
Motif
Other DBs
NCBI-GeneID:
115133193
NCBI-ProteinID:
XP_029522080
LinkDB
All DBs
Position
LG1:complement(6614032..6767980)
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AA seq
1271 aa
AA seq
DB search
MEGRDDKGNKESNLSKPDIQKFALWYIGWSSLDKRTTLPMLPWLVAEIRKKSEKNESGRD
TCSVQAREVQLVLTPPFIRCVPANNVANSSVFIFEHKAQFISRFIHNSNDLTYFAYLIRS
QPDNPESEMACHVFRAYDPNQVPEVISSIRAVSKSALKEDSKPKRDTEEAFYNSQKFEVL
YCGKVTIGHKKAPSTLIDDCINKFRQHELERKHLRLLNDQRGSTESAPIEFIMGDDGDPL
SSTTHSEGLEDPEGLEVDEVTNRGGSGGKIMSNSPSLGSLRGSFPECILEDSGFEEQQEF
RTRCSSLAGSLQRRPLEGALKAAPARRRHASAPNNVQPSDADKNRTMLFQVGRFEVNLIS
PDSKTVVLEKRFKDISSCSQGINKTDHFGFIFRDPGETGPGQYVCYVFQCASESLVDEVM
LTLKQAFSTAAALQSAKTQVKLCEACPMHDLHKLCERIEGLYPPRAKLAIQKYLSQLTDN
EQVDIFERVQRMKPVSDQEENELVILHLRQLCGTKQKSHLHIGEAQLKTPNTTAPADSTA
ATGGRFKLDILKNKAKSSLTSSLENIFSRGANQMRGRLGSMGGSFERADDSPGDSPPGTP
PGFPDDDPDALQFRRRAHTFSHLPVKKRISFNDASTQGGTGTHSKALLRRQQSVNPELLQ
SSPVPTSRTRSVSESESNFSLSSSFSAPTFLKSFYQGSFGSMGSLADTRTLWSNGEGRKR
TLSGCSSDSVSAPLNIRKVSWRQKIFLRVASPMNKPTSMQHPDHCDVMDLLPLSPRSFDP
SLDPLASLLPTSGDTFTGKRPKRTAVHYRALWKTAIHQQILLLRMEKENQRLEASRDELH
IRKMKLDYQEVGTCIKDVLAFWDRKLSVPGRAKVVPLDKEEVHNAISKGVPKGRRGEVWL
LFSQQHRLRHRLPPGRHAPDTPYQDLLKQLTAQQHSILVDLGRTFPTHQYFSAQLGAGQL
SLYNLLKAYSLLDTEVGYCQGISFVAGILLLHMSEDQAFDMLKFLMYDLGFRRQYRPDMT
SLQIQMYQLSRLLHDYHRELYSHLEEHEICPSLYAAPWFLTLFASQFPLGFVARIFDILF
AQGSEVIFKVALCLLSSHEGEIVECDSFETIVDYLKTTIPNLTHTQMEETISKVLDMDIS
KQLHAYEVEYHVLQDETVDAVLQSNDSDRLDKLEKTNNQLKKQNMDLLEKLQAARQKIQS
LEATVENFLSRESKMKHMIRSLEQERQSYQKTIERMRSCLPPDALADVEMTHMVKPAQGP
NGKAKPTAKKP
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atggagggtcgggatgacaaagggaataaagagagtaatctctcgaagccagatattcaa
aagtttgctctctggtacatcggctggtcctccttggacaagcgtactaccctgcccatg
ctgccgtggttggtggcggagatccggaagaaaagtgagaagaacgaatcgggacgcgat
acttgttccgtccaggccagagaagttcaactggtgctcaccccgccgtttattcgatgt
gtgcccgccaacaatgtcgccaactcgtccgtcttcatcttcgagcataaagcgcagttc
atctcacgttttatccacaacagcaatgacctcacttatttcgcctaccttatccggagc
cagcccgacaacccggagtctgagatggcatgccatgtcttcagggcatacgaccccaac
caggtaccagaagtgatcagtagtatccgtgcggtgtctaagtcggccctaaaggaagac
tccaagcccaagcgggatactgaagaggccttctataactcccagaagtttgaagtgctc
tactgtggcaaggtgactatcgggcacaagaaggctccctccaccctcattgatgactgc
atcaacaagttccgccagcatgaattggagcgcaagcacctgcgcctcctgaatgaccag
cggggatccacagaaagcgcccccatagagttcatcatgggggatgacggagaccccctc
tcctcaaccacccacagtgaggggctggaggaccctgaggggctggaggtggatgaggtc
actaacagaggaggttctggagggaagatcatgtccaacagccccagcctgggcagcctg
cgggggtccttccccgagtgcatcctggaggactctggtttcgaggagcagcaggagttc
cggacgcgttgtagcagcctggcgggcagtctgcagcggaggcccctagagggtgcgctc
aaagccgccccggcacgccgccgccacgccagtgcccccaacaacgtccagccctcagac
gccgacaaaaaccgcaccatgctcttccaggtcggacgcttcgaggtgaacctgatcagt
ccagacagtaagactgtggtgctggaaaagagattcaaagacatctcgtcctgctctcag
ggtataaacaagacggaccactttgggtttatctttcgcgacccaggggagactggtccg
ggccagtatgtgtgctacgtcttccagtgtgccagtgaatccctggtggatgaggtgatg
cttactctgaagcaggccttcagtacggcagcagctctgcagagcgccaagacacaggtc
aagctgtgcgaggcctgccctatgcacgacctgcacaaactctgcgagaggattgagggt
ctgtatcctcccagggccaagctggccatccagaagtacctctctcaactgactgataac
gaacaggtcgacatctttgagcgagttcagagaatgaagcctgtgtcggaccaggaagag
aatgagctggtgattctccacctccgccagctatgtggaaccaagcagaaatcccacctc
cacatcggagaagcccaactgaaaacccccaacacaacagcaccagcggacagcacagca
gcgacgggtggccgcttcaaactggacatcctgaagaacaaggccaagagctcgctgacc
agctcactggagaacattttctcacggggcgccaaccagatgagaggtcgcctgggaagc
atgggggggagctttgagagagcggacgactctcccggcgactccccaccaggcacgccc
cctggtttccctgacgacgacccagatgccctccagttccggcgacgtgcccacaccttc
agccacctgcccgtgaagaagcgcatctcgttcaacgacgcgtccacccagggaggcact
ggtacccacagcaaggctctgctccgtaggcagcagtctgtcaaccccgaactactgcag
agcagccccgtgcccacctcgagaacgcgcagcgtgtcggagagcgagtccaacttcagt
ctctcctcctccttctccgctcccactttcctgaaaagcttttaccagggctccttcggg
tccatggggtctttggccgacaccaggaccctctggagtaatggggagggcaggaagagg
acgctatctggatgcagcagtgacagtgtgagtgcacccctcaacatccgcaaagtgtcc
tggagacagaagatcttcctgcgggtcgcctcgcccatgaacaagcccacctccatgcag
cacccagaccactgtgatgtgatggacctgctgcccctctccccacgctccttcgaccca
agtctggaccccctggccagcctactgcccacctcgggtgacaccttcactgggaagagg
cccaagaggacggcggtgcactaccgggccctatggaagacggcgatccaccagcagata
ctgctgctacgcatggagaaggagaaccagagactggaggcaagtcgagacgagctgcac
atccggaagatgaagctggactaccaggaagtggggacatgcattaaagacgtgctagcc
ttctgggacaggaagctgagcgttccgggcagagccaaggtcgtcccgttggacaaagag
gaggtccacaatgcaatctctaagggtgtccctaagggcaggcgtggggaggtgtggctc
ctcttctcccagcagcaccgcctgagacaccgtctgccccccggccgccacgccccagac
accccctaccaagacctgctgaagcagctcacggcccagcagcactccatactagttgac
ctgggtcggacgttccccacccaccagtacttctcagcccagctgggtgcagggcagctg
tccctctacaatctgctcaaggcctactctctgttagacactgaggtgggctactgccag
ggcatcagctttgtggcaggtatcctgctgttgcacatgagtgaggaccaggcctttgac
atgctcaagttcctgatgtacgacctgggcttccgcagacaatacaggcctgacatgact
tctctacagattcagatgtaccagttgtccaggctgctgcacgactaccacagggagctg
tacagccacctggaggaacacgagatctgccccagcctctacgcagccccatggttcctc
acactctttgcctcccagttcccactcggattcgtcgcacggatatttgatatcctattt
gcccaggggagtgaagtgatctttaaggtggctctgtgtttactgagcagtcacgaaggg
gagatagtggagtgtgatagcttcgagaccatcgtggactacctgaaaactacaattccc
aacctcacccacacccagatggaggaaaccatctcaaaggtgttggacatggacatatcg
aagcagctacatgcttatgaggtggagtaccacgtgctgcaggacgagacggtggatgct
gtgctccagtcaaacgactcagaccgtctggataaactggagaagaccaacaaccagctg
aagaaacagaacatggatctgctggagaaactacaggcggcacgacagaagatccaaagc
ctggaggccactgtggagaacttcctgtcacgtgagtccaagatgaagcacatgattcgc
tcgctggagcaggagcgccagtcctaccagaagactattgagcgcatgcgctcctgcctg
cccccggacgccctggctgacgtggagatgacccacatggtcaagcctgctcaggggcca
aacggcaaggccaagcccaccgccaagaagccctaa
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