Oncorhynchus nerka (sockeye salmon): 115133260
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Entry
115133260 CDS
T07952
Name
(RefSeq) transcription intermediary factor 1-alpha-like isoform X1
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
one01001
]
115133260
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115133260
Enzymes [BR:
one01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115133260
Protein kinases [BR:
one01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
115133260
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
115133260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
ANCHR-like_BBOX
PHD
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_5
PHD-1st_NSD
PML_CC
Trm112p
PRANC
DUF1351
ParB
DUF5054
Motif
Other DBs
NCBI-GeneID:
115133260
NCBI-ProteinID:
XP_029522171
LinkDB
All DBs
Position
LG8:14137284..14156020
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AA seq
1142 aa
AA seq
DB search
MDESPEAAVDNDDLVIIVENEAESLPAEEERAKQLGGSIGLMDTCPVCKLNFHNREPKLL
PCLHSFCKKCLPPPSRNLVNSEQRRDPQLQADNSKPREILNVIRCPVCRQECWEVEVLDN
FFVKDSVEVPSSTVEKTSQVCMSCDDNTEATGFCVECVEFLCVTCIEAHQRVKFTRDHTI
RQKEEMSPEAVGASSQKPVFCDIHKQEPLKLFCETCDRLTCRDCQLLKHKDHNYQFLEDA
YRNHRQHLENMTHQLQEKRKAIEEVSNCINNGLQQVDENRKSVTNEIKKSICNLIMEINR
KGKILVNQLETLTKDHEVGLKKQQEDVSHLTRHLDHVINFTKWATASHSGTALLYCKRLI
LCQIHYLMRANCNASIVPQSSVRFQCRSGFWASNVDLGSLAVERIPGRQPSSMQQGFPPG
HPSQPGPGPRGEGPPGAFPPGSSAHQRGSTLAQLQLQVEKLAQHPNRAGQPPPNHWSWYQ
QGLKLPGPGGPPPQRPHQGGSPSQGPPNMVQIQQPGRSYGPQTHPNPRSPTSMLQNAGFP
PQSLRDLIHNSSFPPKPMDVLQGTSRYSHAPPPNTGPISTQASIHQRNMMEAAQLRRSDP
SGASSSLSMPNPRASYAPSLATVFPDRHAQGRQNSPMSKSSSEANVGSASWKRTEPNAAA
PPSSAKRRRRSSPGPIIVIKDEPEDDDEVSFVQSSVGASASLPDSSTGIQPKPQQQSLPA
PMVEPQPEPEPQPEPQPEPQPEPQPETQPETQVELEADPQPDPEKAPGVPEDDPNEDWCA
VCQNGGELLCCDRCPKVFHLNCHIPTLRESPSGEWFCSFCRDLTSPEMEYNPDSQGELPA
MKEEPGSEGFPPVDKRKCDRLLLCIYCNEFSTDFQEPASPSSIPEYKELIETPMDLSIVK
SRLESKESPRYCSAEEFVKDVRLIFRNCAKYYQADTEVGGAGLSLEEYFEEQLKFLYQDR
SFPGGREEGMIPPVEDEMEEGMEDDGMAPNEGDMPPVEDDLTPVEEGMPSMEKEGTGEGM
DPVEGEMEEEGIPPLEESMEEEETSPVKEDSLPCDATEPVDPSIRGASSPNLSSKEAPQP
LSDTPDNPPCEEAPQPLSDTPDNPPDSQGTSTADSQDTSPAAGLATENEGMTEEVRDKAE
EE
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atggatgagagcccagaagctgctgtggacaacgatgaccttgttattatagtggaaaac
gaggcagagagcttgccagctgaagaggagagggcgaaacagctaggaggtagcatcggt
ctcatggacacttgccctgtctgtaagttgaatttccacaatcgagagccgaaacttctg
ccatgcctccactctttctgcaagaagtgtcttccacccccttcaaggaacttagtcaac
agtgaacaacgtcgcgacccgcaacttcaagcggacaactcgaaaccacgtgagatcctc
aatgtgatccgctgcccagtttgtcgacaagagtgctgggaggtggaggtgctggataac
ttctttgtgaaggactctgtggaggttcccagcagcacagtggagaagaccagtcaggtg
tgtatgagttgtgatgacaacaccgaggccacggggttctgtgtggagtgtgtggagttc
ctgtgtgtgacgtgtattgaggcccaccagagggtcaagttcaccagggatcataccata
cggcagaaggaggagatgtccccagaggctgtgggtgcgtcctcacagaagccagtgttc
tgtgacatccacaagcaggagcccctcaaactgttctgtgagacctgtgaccgtctcaca
tgcagggactgtcagctgctcaagcacaaagaccacaattaccagttccttgaagacgcc
tacagaaaccacaggcaacacctggaaaacatgacgcatcagctacaggagaagaggaaa
gccatagaagaagtgtccaattgcatcaacaatggactccagcaagtcgatgaaaaccgc
aagtctgtcaccaatgagataaagaagtcaatttgcaacttgatcatggagatcaacaga
aagggaaaaatcttggtcaatcaacttgagacactgacgaaggaccatgaggtcggacta
aagaaacaacaagaagatgtcagccacctgaccagacatctagatcacgtcatcaacttc
accaagtgggccacagccagtcacagtggcacagctctcctgtactgcaagagactgatt
ctttgccaaatccattacctaatgagggccaactgtaacgcatccatcgtccctcagagc
tcagtccgcttccagtgtcgctccggtttctgggcctcaaatgtcgatcttgggtctttg
gcagtagagagaatccctggtcggcagcccagttccatgcagcagggcttccctcctggc
caccccagccagcctggccctggccccagaggagagggccctcctggggctttccctcca
ggctcctccgcccaccagcgtgggagcaccctggctcagctccagctgcaggtagagaag
cttgcccagcaccccaacagggctggacagccccctcccaaccactggtcctggtaccag
cagggtctgaagctcccagggccagggggcccccctccacagaggccccaccaggggggt
tctccgtcgcaaggtccccccaacatggtccagatccagcagccgggccggagttacggg
ccccaaacccatcccaaccccaggagccccacctctatgctgcaaaacgcaggattccct
cctcagtctctgagggatctcatccacaactccagctttcctcccaaaccaatggatgtg
ctacagggtacctctcgctactctcatgcaccccctcccaacacaggacccatcagcact
caagcctctatacaccagcgtaacatgatggaagccgcacaactgaggaggagtgacccc
agtggagcttcatcatcattatccatgcccaaccccagagctagttatgctccgagccta
gctactgtcttcccagacagacatgcacaaggaagacagaattcccccatgtccaaatct
tcctctgaagccaacgtagggtctgcttcctggaagcgcacagagcctaatgcggcggct
cccccctcctcagctaagcggaggcgaaggtcatcccccggaccaatcatcgtcatcaag
gacgaaccagaggacgatgacgaagtcagctttgtgcagtctagtgttggagcctcagcc
agcctgccagacagcagtacaggcatccagcccaagccccagcagcaatctctcccagca
cccatggtggagccccagccggagccggagccccagccggagccccagccggagccccag
ccggagccccagccagagacccagccagagacccaggtagagctagaggcagacccccaa
ccagacccagaaaaggccccaggtgtccctgaagacgaccccaatgaagactggtgcgct
gtgtgtcagaatgggggagaactgctctgctgtgaccgatgtcccaaagtcttccatctg
aactgtcatatacctacacttagagaatctcccagtggtgagtggttctgttcgttctgt
cgtgacctgaccagtcctgagatggagtataacccagatagccagggagaattgccagcc
atgaaggaggagccaggatcagagggattccctccagttgataaaaggaaatgtgataga
ctgttgctctgcatctactgcaacgagttcagtacagatttccaggagcctgcctcaccg
tcgtcaatcccagagtataaggagctgattgagactccaatggacctgtccatagtgaag
agcaggctggaatctaaggagagcccgcgttactgcagtgctgaggagtttgtcaaggat
gtcaggctcatattcaggaactgtgcaaagtattaccaggcagacactgaggtgggaggt
gcaggactgagtctggaggagtactttgaggagcagctgaagttcctctaccaagacagg
agcttccctgggggcagagaggagggcatgataccccctgtggaggatgagatggaagaa
gggatggaagacgatgggatggctcctaacgaaggggatatgccccctgtcgaggacgac
ctaacacctgttgaagaagggatgccttctatggagaaagaaggaactggagaggggatg
gatcctgtggaaggagagatggaggaagaagggatacctcctttagaagagagcatggaa
gaggaagagacttctccagtgaaagaagactcactaccttgtgatgctactgaaccagta
gatccatcaataaggggtgcatcatctcccaacctttccagcaaggaggctccccaaccc
ctctcagatactccagacaaccctccctgcgaggaggccccccaacccctctcggatacc
ccagacaaccctcctgactcccagggcaccagcactgctgactcccaggacaccagccct
gctgcaggcttagccacagaaaatgaggggatgactgaagaagtgagagacaaagcagaa
gaggaatga
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integrated database retrieval system
