Oncorhynchus nerka (sockeye salmon): 115133280
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Entry
115133280 CDS
T07952
Name
(RefSeq) collagen alpha-6(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04382
Cornified envelope formation
one04510
Focal adhesion
one04512
ECM-receptor interaction
one04518
Integrin signaling
one04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115133280
04518 Integrin signaling
115133280
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115133280
09142 Cell motility
04820 Cytoskeleton in muscle cells
115133280
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
115133280
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
one04147
]
115133280
00536 Glycosaminoglycan binding proteins [BR:
one00536
]
115133280
Exosome [BR:
one04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
115133280
Glycosaminoglycan binding proteins [BR:
one00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115133280
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
115133280
NCBI-ProteinID:
XP_029522212
LinkDB
All DBs
Position
LG8:complement(15400029..15580994)
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AA seq
1676 aa
AA seq
DB search
MKFWICVLAVSWAVEATLGGTTGEPCNGLDCSGGCNCNPEKGGRGRPGALGPVGPSGPEG
FPGDQGPSGPKGEKGHVGLGGPSGLKGEKGPMGVPGFPGTDGVPGHPGADGGRGLPGADG
CNGTQGEPGPRTLNSGIPGAPGLSGPTGPKGQKGEPVYVGLSGGVPGPDGVPGPRGPDGG
PGDFGPRGPDGFLGAPGPPGPPGPVGSPSLGFQGEPGDKGDVGPQGDPGRPLVNGVVEFV
GFPKGDKGPKGEGGYKGVRGPTGRPGPPGPFGFPGEVGESGILGYPGGRGPPGFNGPPGS
PGRQGFTGSPGFPGQPGYRGPKGDQGEQGPPGPPIYTDAQGMSVQGAPGDNGIDGLPGQP
GDAGAPGFPGQPGRPGDSFGDGRGSSPGFPGTPGPKGERGNPGRQSYGPEGQPGGQGLPG
TPGPPGPPGRSVANIQTDLFDNLPGRPGAQGPPGASGYKGPKGELGDCNCLGEGTSGGVG
PPGAPGSDGRPGGFGRKGESGDPGIPGFGGQPGTPGRAGERGFFGRKGEKGASFYPSFSR
GIKGELGALGPQGPPGDMGRPGRDGLPGFPGQPGPPADVDGYGTVGERGFPGFSGAKGRV
GEPGENGIGYQGTVGTRGLPGDPGFTGLPGQPGLPGPPGLTVPCRLPGEDGEPGYPGIPG
RTGPKGEPGFPGGPGRPGFDGGKGERGDPGFGGQPGPQGFPGPRGDAGVPGIPGEGRPGA
PGKNGFPGRPGGKGQPGEVLGASTGLPGSPGFPGGPGDKGERGASGPPGGPGFDGRSGVS
GAKGERGTEGYPGTPGLPGLPGEGRPGGFPGPAGPAGSRGLTGPPGCQGYPGVKGARGDA
GFPGPAGMKGQPGEPGGDGSPGLRGLPGPPSPGGRDGIPGGPGRKGESGYPGLVGFPGMP
GNPGRPGGPGGKGAPGFSGRDGLPGDFGAPGPKGDRGNAGPPGAPSLPVRVEYIEKGQMG
DNGANGLPGFPGPRGDKGFPGLPGRQGLPGLPGYADRAKGEQGLPGIPGRPAGPGYPGPK
GSPGIIGFPGMPGPRGDDGEPGFPGNPGVLGQPGAKGERGDSSGYPGGPGAKGEAGTPGY
SGNPGAKGAPGDNGFAGGPGFNGQKGAPGDQGIPGQMGTPGFTGAKGLNGYPGGRGLDGT
PGRSGFPGTPGEKGLPGSPGLDGLNGLAGPKGLPGTPGYSEGGRPGTPGAAGLKGERGSS
IPGGPGYNGEKGARGESGGPGVTGFPGLPGLRGETIISNIPGPLGDPGLPGIDGEEGYRG
PPGPPGPPGPGTAQGDRGNSGLSGIPGTPGNRGDPGGPGGPGRDGNPGFKGERGDSGYSG
ASGQMGFPGDPGYYGGKGPKGRRGDTGRKGPQGITFPRPDIPTPYGDMGDPGTNGTPGSV
GEAGNPGMPGRGGPKGRPGAVGKLGRNGGSGLDGPLGDSGPPGFPGPTGSQGLPGKPGLQ
GPPGSVARSRSIGYTLVKHSQNNQVPMCPQGMAQLWEGYSLLYVEGQEKAHNQDLGMAGS
CLPRFSTVPFLYCTPNEICYYASRNDKSYWLSTTAPIPMMPVGEEAISQYISRCSVCEAY
SQPVAVHSQDLTIPTCPAGWRSLWIGYSFLMHTAAGAEGGGQSLSSPGSCLEDFRATPFI
ECNGAKGTCHYFANKYSFWLTTVEPNREFDPPPMDTLKGGNQRSRVSRCQVCSKIL
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atgaaattctggatttgtgtactcgctgtcagctgggcagtagaagcgacactcgggggg
acgacaggagaaccgtgtaatgggttggactgtagtgggggatgcaattgtaatccagag
aaaggcggcagggggcgtccaggggccctggggccagtaggacccagtggaccagagggc
ttcccaggtgaccaagggccttcagggcccaaaggagaaaagggtcacgtcggactcggg
ggcccctctgggctgaaaggagaaaaggggcctatgggcgtaccagggttcccaggaacc
gacggagtcccaggtcacccaggtgcggacggtggcaggggtctaccgggagcagacggg
tgcaacggtacccagggagaaccaggtcccagaactctaaacagtggaatacctggagct
ccaggactctctggtcccactggtcctaaaggacagaagggagagcctgtatacgttgga
ctcagtgggggagttcctggaccggatggtgtacctggtcctagaggtccagacggaggt
cccggtgacttcggccctcgaggtcctgatggattcctgggtgctccaggcccccccggt
ccccctggccctgtagggagccccagtctagggtttcagggggagccaggagacaagggc
gatgtgggcccgcagggagacccaggcaggcccttggtcaatggagtggtggagtttgtg
ggctttcctaaaggagacaaaggacctaagggggaagggggttacaaaggagtgcgtgga
ccaactggtagacccggcccacctggtcctttcggctttcctggcgaggtgggagagagt
ggaattttggggtatccagggggacggggtcctcctggttttaacgggcctcccggatct
ccaggaagacagggattcacaggaagtccagggttccccggccaaccaggctacagagga
cctaagggtgaccagggagaacaggggcctcccggacccccgatctacactgacgcacaa
gggatgtctgttcaaggagcaccaggtgacaacggcatcgacggcctccctggccaacca
ggggacgcgggagctccagggtttccaggacaaccaggacgaccaggcgactccttcggc
gatggtcgcggaagcagcccagggttccctggtacaccggggcctaagggagagaggggt
aacccaggcagacagagctatggtcctgagggccaaccaggaggacaaggcttaccagga
acccctggaccacccggaccaccaggcagatctgtagccaacatccaaaccgacttgttc
gacaatctgccaggacgaccaggagcccagggaccacctggagccagtggatataaggga
cccaaaggggagctgggtgactgtaactgcctgggagaaggcacctcgggtggggtgggg
ccaccgggtgctcctgggtctgatggaagacctggggggttcggacgtaaaggcgagagc
ggagaccctggcatacccggtttcggaggacaaccaggaacacctggtcgtgcgggtgag
aggggtttctttgggcgtaaaggagagaagggggcctccttctacccgtcgttcagccgg
gggatcaagggtgaactgggggccctgggtcctcagggcccccccggagacatgggccga
cccgggagagatggactgcctgggttccctggacagcctgggcctcctgctgatgtcgat
ggctacggaaccgtcggagagagaggtttcccggggttctcgggggccaaaggtcgcgtg
ggtgaaccaggagagaatgggattggctaccagggtaccgtcggtacccgcgggttgcca
ggcgacccgggcttcaccgggttaccagggcaacctggtttacctggcccgccagggttg
acggtcccttgtcgtctacctggcgaggacggagaacccggctacccaggaatacctgga
agaacaggtcccaagggcgagccaggtttcccagggggtcccggtcggcccggctttgat
ggagggaagggagagaggggagaccctggcttcggaggtcagcctggaccacaaggtttc
cctggccccagaggagatgcgggcgtcccaggtatcccaggcgagggccgtccaggggcc
ccagggaaaaacgggttcccggggaggccggggggaaaggggcagccgggggaggttctg
ggggcctcaacaggtctccctggatcacctggttttcccggaggaccaggagacaaggga
gagcgaggagcatcgggaccacctggaggaccaggttttgacgggcggtccggtgtttcc
ggcgctaagggtgagcgtggtaccgaaggctaccccggaactccaggtcttcctggactt
cccggagagggcagaccgggtggatttcccggtcctgccggaccagccggaagcagagga
ttaaccggacctccaggctgtcaaggctaccccggtgtgaagggagccagaggtgatgca
ggctttccaggcccagctgggatgaagggacaaccaggagaaccaggaggcgatggctct
ccaggactcaggggtcttccaggaccaccgagccccgggggaagagacggcatccctggg
ggaccaggaagaaagggcgagagcggttaccccggactggtgggtttccccggaatgcca
ggtaaccctggaagacctggaggtcccggagggaaaggagctcccggattctcaggaaga
gacggtctgcccggagatttcggagcgccgggacctaaaggtgacagaggtaacgctggt
ccacccggcgcaccctctctgcccgtcagagttgagtacattgagaagggacagatgggc
gacaatggtgccaacggtctacccggtttccctggacctagaggtgacaagggtttccca
gggctgcctggtcgacagggtttgcccgggctgcctggttatgctgacagggctaaagga
gaacaaggacttcctggtatccccggacgcccagccgggccaggctacccagggcctaaa
ggatctcccggtatcatcggcttccctggcatgcctggacctaggggtgacgatggcgaa
cctggtttccctggaaaccccggagtccttggtcagccaggtgccaaaggtgagagaggt
gactcgtccggctaccccggaggtcccggagctaaaggtgaggccggaacccctggttac
tcaggcaacccaggtgctaaaggcgcccccggggacaacggttttgcaggcggccctggg
ttcaacggacagaagggagcaccgggagatcaaggaatacccggacaaatgggtacccct
ggtttcaccggcgctaagggtctgaacggatacccaggaggaagaggtctagacgggaca
cctggccgctccggcttccctggaacacctggagagaaaggtctgccgggatctcctggt
cttgatgggctcaacggactggccggacccaagggtctaccaggaaccccaggttatagt
gaggggggtcgtcccggcactcctggagcagccggtctgaagggagagaggggctcctcc
atcccaggtggacctgggtacaacggagagaagggagctagaggagagtcagggggtcct
ggtgtgacgggcttcccaggactgcctggtcttcgcggggagacaatcatttctaatatc
cctggaccactgggagaccctggcctgccaggaatcgatggagaagaaggttaccgtggt
cctccaggccccccaggcccaccggggcccggtacagcccaaggggacagaggcaactct
gggctctctggcatccctggtacccctggtaaccgtggagaccctgggggtccaggtggc
ccaggacgggacgggaaccctggattcaaaggagagagaggtgactctgggtacagtgga
gcatcaggacaaatgggcttccctggagatccaggatactacggtgggaaaggacccaaa
ggaaggagaggtgatactggtcgtaagggaccccaaggtataactttccccaggccggac
attccgacaccctatggagacatgggagaccccgggaccaacggaactccagggtccgtg
ggagaagcaggcaatcccggcatgccaggcagggggggtcctaaaggcaggcccggcgcg
gtagggaagctggggaggaacggagggtcaggcctggacggacctctgggagactctggt
cctcctggtttccctggacctaccgggtcacaaggtctgcccggtaagcctggactgcag
ggtcccccaggtagtgtggcgcgcagcaggagtattggctacactctggtgaagcacagt
cagaacaaccaggtgcccatgtgtcctcagggcatggctcagctctgggaaggatacagt
ctgctgtatgttgaggggcaggagaaggcccataaccaggaccttggtatggcaggctcc
tgccttccccgtttcagcactgtcccgttcctgtactgcacgcccaacgagatctgctac
tacgccagccgcaacgacaagtcctattggctgtccaccacggcacccatccccatgatg
ccggtgggagaggaggctatcagccagtacatcagcaggtgctccgtgtgcgaggcctac
tcccagcctgtagctgtccactcacaggacctcaccatccccacctgccctgccggctgg
aggtccctctggatcgggtactcctttctcatgcacactgctgccggggctgagggtggc
ggccagtccctgtcctctccagggtcctgtctggaagacttccgcgccacacccttcatc
gagtgtaatggggccaagggcacctgccactactttgccaacaagtacagcttctggctg
accacggttgagcctaaccgggagttcgacccccctccgatggacacactgaagggaggc
aaccaacgcagccgagtcagtcgctgtcaagtctgcagcaagatcttgtag
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