Oncorhynchus nerka (sockeye salmon): 115133331
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Entry
115133331 CDS
T07952
Name
(RefSeq) transcription factor Sox-19b-like
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115133331
Transcription factors [BR:
one03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
115133331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
SOXp
Motif
Other DBs
NCBI-GeneID:
115133331
NCBI-ProteinID:
XP_029522311
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Position
LG8:complement(18939141..18943110)
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AA seq
289 aa
AA seq
DB search
MYNMMEHELKPSGQQQSHQTAMSPVTGNSHPGSKSLCPPGGDPMDKVKRPMNAFMVWSRG
QRRKMAQENPKMHNSEISKRLGAEWKLLTDAEKRPFIDEAKRLRAVHMKDYPDYKYKPRR
KSKPLLKKDNQMGKYPLSAGNLLAAAQGQGGSPRMESYGWGPAGGYAGMQSEALGYTQQL
HRYDLSALQYPQAMTAAQTYMNGANTYSPMSYSSSHQQPNPIMSMVKPEPVSHSPTGGPN
HHRGPLQGDLRDMISMYIPGGDTTDPVSQRGGYSVQQHYLSGTVPLTHI
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgtataacatgatggaacacgagttgaagccctctgggcaacagcagtcgcaccaaacc
gccatgtctccggtcaccggcaactctcacccggggtccaaatccctgtgtcctccgggc
ggggaccccatggacaaggtcaaaagacccatgaacgcattcatggtctggtctaggggc
cagcgccgcaagatggcccaggagaaccccaagatgcacaactctgagatcagcaagcgg
ctgggcgcggagtggaagctactgactgatgctgagaagcggccattcattgacgaagca
aaacgcctcagggcggtgcacatgaaggattaccccgattataagtacaaaccacgccgt
aaatccaagcccctgctcaagaaggacaaccagatgggaaagtaccctctctctgccggg
aacctgctggccgccgcgcagggccaaggtgggagccccaggatggagagttacgggtgg
ggcccggcgggaggctacgccgggatgcagagcgaggccctgggctacactcagcagctg
caccgctacgacctgtccgcgctccagtacccccaggccatgaccgcagcacagacgtat
atgaacggcgccaacacttacagccccatgtcttacagcagcagccaccagcagcccaac
ccaatcatgtccatggtgaagccagagccagtgtcgcactccccgactggtggacctaac
caccaccgcgggcctctccagggggacctgcgggatatgatcagtatgtatatccccgga
ggggacaccactgacccggtctcccagagaggcggctacagcgtccagcaacactatctc
agtgggactgtgcctctcactcatatctag
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