Oncorhynchus nerka (sockeye salmon): 115133364
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Entry
115133364 CDS
T07952
Name
(RefSeq) uncharacterized protein LOC115133364 isoform X1
KO
K24316
Rho guanine nucleotide exchange factor 40
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115133364
Membrane trafficking [BR:
one04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
115133364
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Ortholog
Paralog
GFIT
Motif
Pfam:
KIAA1755_N
SOS1_NGEF_PH
RhoGEF
KIAA1755_C
DHC_N2
CLIP1
IQ_SEC7_PH
WIT1_2_N
Motif
Other DBs
NCBI-GeneID:
115133364
NCBI-ProteinID:
XP_029522373
LinkDB
All DBs
Position
LG8:complement(19851726..19891278)
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AA seq
1801 aa
AA seq
DB search
MGSEAVEDCVQGALSSLYPPFESTAPPLLSQVFSVLESTYQHDSLRYLLDYFIPAKHLLH
KLQQHACSQYLGCLFLHSGWPLCLGEKIVVQLSTLDWRLLRSTDFYLQVVPFSTRCPRLA
LKCLAPGGRNVQEVLVPESQHPLVFTTEWLHSVNKERGYKREGGGGLDTCLISTCDGVVR
LPWEEVVYPKFIHNPSDDLTTMADHPTSVSDHTTDLTPVVGLGLGGWGGSSSGEPDSCSW
DEEDDDLPPDSVDAEAVLPRRRCSEDGLGRTTRHHQMAGDGDYVELLEPRGGPDGGADPR
QRYLEMHGICKTKTLPLCRRSKAIKLRRGKAWGYGRLDAAGGSRGVLGGKRDSVTHRGDW
LPPRPLPRVIDVGRARRSESYPSSLQNSDEGEKQALGKDPEGLGSQGLYFDGPSKERRPG
VGREREGSGCNVTQPCRDSHGSNSLVASETTNPKAAHVVEGQSDQNSRSESVFEDADKSL
SGDSDTMPTTDTRGSGENAARPLIDIPGNGENVDSPLADGSETQKGRHSTSDSCVPDKTA
DSTEHRGTERSLSRPGTDADPKGATTPEERAEGKTEEIGVCPRGKEVKTGGFRAPRRKRK
GRGGKGKAKSGCRGNQKTRDQAGSKPPSKTPQRGPAISSTTNLPITTTNLSEATQQPEGA
DKEVTPVNEGREKAEIGESNTENQVVQSEVSPDTTTSQSGTSLSNHSTEELGAETSPDLS
NGLSPKAPPLLRELDTELLQSGKLMLTGTVDRLGRAVVVTETHLPEDGCRADEMGRVLAC
YHRITRSSAKERGLTVIVDSRQSPPSALCLAALKQLQAVVPGGLGSVLILVEEQHQESST
HSLEGVEVHTVRGTGVLQQYIDRQQLPLEMDGDYKHCHSDWLAFRLSVESLTECCESALS
LLEDALQSMDTAPLPDCIKTVPLSVEKHRQLMTSILVDQRLTELQRKGGAWLAGLANGTS
GLAKRSPDCRAALAATSNLYDSVDDSLHRLVQVSNQRGSDLEALGRLATMVDKLEKCERE
IEQIQDQLEDYREPPISLSRLSLKQQKFKTFRESANELHTETLAVLGDLESWSELDWGGL
IEVQVRVPPVRERLRDMSHCLSDCWTTLDNTQRLLSTLTEANQWCDVISSTSPSPSTPLS
SLPPIPPSRFQDARALALELGGGALLDLWSQTLERYQRTVAQVKPRLLQQAERGQNQGQA
RPKTPSASSLWDLMGPEGEGDWGVGAGGGEGGLQSWGSLASLFRPQTCSTLKIGEEKGNR
KEGTGGGGGGAGGGKFLQNLLHPAKKSPTEAPLPPKPPRKRHPSFDLQALLAPRRGPATA
RPVEPPVGAASRNSPLTWLGRRALTDPVIAAGMAAAVPGWREGGGGGIGGGIGGVQGGSG
VLIRGVEVSSKEVVDYTGTPRQHVLLSRAERETGGERQGTTTAQSKLYLLWCRMLSSERQ
YVAVLKGVEETYLPLLEGPDTPSSLRGKADLLFPKWASLSSFHSQNLLPAMEGALLQSLL
QQDLFSKYREEFLHYSHYIRIKPELDSPLVTQAADFFKLRLPATPPLSPLSFPHCLQAPT
LRLEQYCDALEELGGLNPASDSSLSVLRHVQRHGEDLRASDLIVGCPVPVAERGELVRQG
ELLVCGGTRRKKTGVRSVFLYQHLIIFTKQKSPGPGRTAYSFKHSIKTGEMGLTQSVGEE
GVRFEVWVRQAPRIRDCLTLQCQSGEGRAAWTHDIAQLLWTHAIHNTELCLKETMCIGVS
SKILLDATGAPVTSELDSIYNLNDRVHSSCSDSSSVGSQKEGGSPASGRGQTQNQSPSTA
V
NT seq
5406 nt
NT seq
+upstream
nt +downstream
nt
atgggctcagaggcagtggaagattgtgtgcagggggctctctcgtccctctaccccccc
ttcgagagcacagccccgcctctcctctctcaggttttctctgtgttagagtcgacttat
cagcatgacagtctgaggtacctgctggattacttcatcccagcaaaacaccttcttcac
aaactacagcagcatgcctgttctcagtatctgggttgtctgttcctccactccggttgg
cccctctgcctcggagagaagattgtggtccagctctctactctggactggaggctgctg
cgcagtaccgacttctacttgcaggtggttcccttctccacacgctgcccccgcctggcc
ctcaagtgtttggcccccgggggccgcaacgtccaagaggtcctggtgcccgagtcacag
caccctctggtgttcactacagagtggctgcacagtgtcaacaaggagaggggctacaaa
agagaaggaggtggagggttagatacgtgtctgatcagtacgtgtgacggggtggtccgc
ctaccgtgggaggaggtggtctaccccaagttcatccataacccatcagatgacctgact
accatggctgaccacccaacctccgtctccgaccacaccaccgacctcaccccggtggtg
ggcctcggcctgggtggctgggggggctcctcctctggagaaccagactcctgttcctgg
gacgaagaagacgatgacctacctccagacagtgtagatgcagaggccgttctaccccgc
cgacggtgcagcgaggacgggttagggaggacgacgaggcatcaccaaatggctggtgat
ggggactacgtggaactcctggagcccagggggggtccggacggcggcgcagaccccagg
cagaggtacctggagatgcatgggatctgtaagaccaagaccctgccgctgtgtagaagg
agcaaggctatcaagctccgcagagggaaggcctgggggtatgggcgactggacgcagcc
gggggcagtaggggcgtcctggggggtaagagggactctgtgacccaccggggggactgg
ttacccccccgccccctgcctagagttatcgatgtaggccgagcgagacggtctgagtcg
tacccctcctcgcttcagaactctgacgaaggggagaaacaggccctcggaaaagaccca
gaaggcctaggaagccaggggctgtattttgatggtccgtccaaggagaggaggcccggg
gtgggcagggagagggagggcagtgggtgtaacgttacacaaccatgcagggacagccat
ggaagtaacagtttggtagcgagcgagacaacaaatcccaaagcagcgcacgttgtagag
ggccaatcggatcaaaactctcgctctgaatctgtgtttgaggatgctgataagtcactg
agtggagacagcgacaccatgcccactacagacacacgaggaagtggggagaatgcggcg
aggccattgattgatattccaggaaatggggagaatgtggacagcccgttagcagatgga
tctgaaacccagaaaggaagacattccactagtgactcttgtgtaccagacaaaacagca
gactcgacagaacacagagggacggaacgttctctctctcgacccggtactgacgctgac
ccaaagggagcaacaactccagaagagagggctgaaggaaagacagaggagataggagtg
tgtcctcgaggaaaggaagtcaaaacgggaggattcagggcacccaggaggaagaggaaa
gggagagggggaaaggggaaggctaaaagtggatgtcgtggcaaccagaagactcgagac
caggccggttccaaaccaccaagtaaaacacctcagcgtggtcccgccatctcctcgaca
accaacctgccaatcactacaaccaacctatcagaggcaacacagcagcctgagggggcg
gataaagaggtcacaccagtcaatgaaggacgagaaaaagctgagattggggaaagcaat
acagaaaaccaggttgtccaatcagaagtctcacctgacacaactactagccaatcaggc
acatccttatctaaccactctacagaggagttaggggcagagacatctcctgacctatca
aatggcctatcacctaaagcccctcctctcctaagggaattggacacagaactcctccaa
tcaggaaagctgatgttgacaggtacggtggacaggctgggacgggctgtggttgtcact
gaaacgcacctcccagaggacggttgccgtgcggacgagatgggccgtgtcttggcctgt
tatcacaggatcacccgctcttctgcgaaagagcgaggcctaacagtaatagtagacagt
agacaatctcctccctccgctctctgcctcgctgcactgaaacaattacaggctgtggtc
ccgggaggtcttggctctgtcctcattctggtggaggagcagcaccaggagtcatctaca
cacagtctagaaggagtagaggtgcacacggtgcgagggacaggggtcctacagcagtat
atagacaggcagcagctgcccctggagatggacggagactacaaacattgccactctgac
tggctggccttcagactgagtgtggagagtctaactgagtgttgtgagagcgcactctct
ctgttggaggatgcactgcagtctatggacacagcaccactaccagactgtatcaagact
gttcctctaagtgtggaaaaacacagacagctgatgacgagcatcctagtcgatcaacgg
ctgactgagctgcagcgcaagggtggggcctggttggcagggctggccaatggcacatca
ggactggcaaagcggtccccagactgcagagctgctctggctgcgacctctaacctctat
gacagcgtggatgattccctccaccgcctcgtccaggtgtccaatcagaggggcagtgat
ctggaagccctcggacgattggctaccatggtggacaagctggaaaagtgcgagagggag
atagagcagatccaggatcagttggaagactacagggagcctcccatctctctcagcagg
ctctccctcaaacagcagaagttcaagactttcagagagtcggccaacgagctgcacact
gagaccctggcggtccttggagatctggagagctggtctgagctggactgggggggactg
atagaggtgcaggtcagggtacccccggtcagagagagactcagagacatgtctcactgt
ctgtctgactgctggacaacactggacaacacacagagactactgtccacactgaccgag
gccaaccagtggtgcgacgtcatctcctctacctcaccctccccctccacccccctctcc
tccctccctcccattccgccatctcgttttcaggacgcccgtgccttagccttggagctg
ggtggtggagctctcctggacctgtggtctcagacccttgagagataccaacgcactgtg
gcccaggtcaaacccaggctgctgcagcaggcagagcgagggcagaaccagggccaggcc
cggcccaagaccccctccgcctccagtctgtgggacctgatggggcccgagggagaggga
gactggggtgtcggggccgggggaggagagggaggcctccagtcctgggggtccctggct
tcactgtttcgcccacagacctgctccacgctgaagataggagaggagaaagggaatagg
aaggagggaacgggaggaggaggaggaggagcgggaggagggaaatttctgcagaatctg
ttgcatccggcaaagaagagccccacagaagctcctttgccccccaaaccccccaggaag
cgtcaccccagcttcgacctccaggccctgctggccccccgtcggggccctgccaccgcc
aggcctgtagagcctcctgtgggtgcagccagccgtaactcccccctcacctggctgggg
cgccgggccctcacagaccctgttatcgccgctgggatggcagccgccgtccccggatgg
agagagggaggaggaggagggattgggggaggaataggaggggtgcaggggggatcaggg
gtgctcatcagaggtgtagaggtgagcagcaaggaagtggtggactacaccgggacgcca
agacaacacgtgctgctgagccgagcggagagggagacgggaggggagaggcagggcacc
accaccgcacagagtaaactgtacctattgtggtgcaggatgctgagttcagagaggcag
tacgtggctgtattaaagggggtggaagagacctacttgcccctcctggagggtccagac
accccctcctccctcagggggaaagcagatctcctgttccccaaatgggccagcctcagc
tccttccactcacagaacctcctcccagccatggagggagctctactgcagagtctgctg
caacaggacctcttcagtaaatacagagaggagtttctccactactctcactacatcagg
attaaaccagaattggactccccgttggttactcaagctgcggacttcttcaagctcaga
ctcccggccacccctcctctctcccccctgtcgttcccccattgtctccaggcccctaca
ctgagactggaacagtactgcgatgccttggaagagctgggagggctaaaccctgcctcc
gactcctccctctccgtcctcagacacgtccagcgtcacggcgaggacctccgggccagc
gacctaatcgtcgggtgtccggtcccagtggcggagcgcggagagctggtgcgtcagggg
gagctgttggtgtgtggggggaccaggaggaagaagacaggggtgaggagtgtgttcctc
tatcagcacctcatcatcttcaccaagcagaagagtcccggcccaggacgcaccgcctac
agcttcaaacacagcatcaagacgggtgagatgggtctgacccagagtgtgggtgaggaa
ggggtgaggttcgaggtgtgggtgcgtcaggcccctcgtatccgggactgcctgaccctg
cagtgtcagagtggagaggggagggcagcctggacacacgacattgctcagctcctctgg
actcacgctatacacaacacagagttgtgtttgaaagagacaatgtgtatcggtgtgtct
agtaagatactgctagatgccacaggagcaccggtaacatctgaactcgactctatctac
aatctgaatgacagagtccacagtagctgttcagactcttcctctgttggcagtcagaag
gagggggggtccccagcctctgggaggggacaaacacagaaccagtctccttccactgcg
gtgtaa
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