Oncorhynchus nerka (sockeye salmon): 115133544
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Entry
115133544 CDS
T07952
Name
(RefSeq) ATP-binding cassette sub-family A member 1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one02010
ABC transporters
one04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
115133544
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
115133544
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
one02000
]
115133544
Transporters [BR:
one02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
115133544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
AAA_23
MukB
Motif
Other DBs
NCBI-GeneID:
115133544
NCBI-ProteinID:
XP_029522708
LinkDB
All DBs
Position
LG8:complement(25209014..25503673)
Genome browser
AA seq
2252 aa
AA seq
DB search
MGLLTQLGLLLWKNFTLRKRQKVRLVVELLWPLFLFLILVRVRSTNQPIYQGGCHYPNKA
MPSSGLLPWLQGMMCNIGNPCVNHPTPGEAPGQVNNFNNSIIAGMLIELQSLLANRSILT
KFQRLSEDVDHWALIIQTSNPANGQPIPLRSILNDNEMFTAYLKKNLSMPLTVVNSLMNS
NIHRNEMMGISRQDDLRTTLCNGTTLDRYVEFTSASDKEAFQNVSCSLPEQQMRRAKEVF
LQNLNTSKILTNLPLDVNPAETFGLVRRTTEDALHVIDEVNKLQNSILFKSANTLDFRAD
ALGSLNMLLCGKAPDSNSRNTTMNFSASGLTRNYTENSELSDSRNRSSSAFCKILIDTIE
GTPGLHVVWTMFRPLIQGKVLYTPDTPATRLMVKEANSTFNALAMIKELADAWEDFGHLV
WDYFQNGRQVTTLRALLDNPVFVALLNQRLKGTRWTAELLANFLYNGPPEGRPTGMPPND
WRNAFNTTSQILDLLKKFIGCLNLDKFEAADSERHLMTRALELLESNRYWAGIVFEDLNP
AASHPPPYVKYKIRMDIDKGERTNKIKERGWSPGARSNSFNDLRYIWGGFAYLQDMMDHG
IIRTHTNKSQPLGVFAQQMPYPCYVDDVFLRSLARSLPLYMTLAWIYSVAMIVKGIVMEK
EARLKETVRMMGLRSSTYWLSWAVSSMLPLAVSALLLTLILKYGKVLQYSDPSVIFVFML
VFCMATIMECFFISVFFSKANLAAACGGLIYFVLYLPHLLCYAWRDVLGFQVKIAVSLLS
CVAFGYGCENFAKYEEQGIGIQWSNIAQNPEGDRYSFIVSIIMMLIDALIYWLLTWYIEN
VFPGQYGIAKPWSFPFMASYWCGMSAVPNADPSQFKDPMEYNDYLEKPPPNMKAGVSIRN
LVKIYKTGKKLAVDGLSVDFYENHITSFLGHNGAGKTTTMSILTGLFAPTSGTALINGYD
IRTDMDTIRKHLGMCPQHNVLFNDLTVEEHIYFYARLKGRSRDEVKTEMDQMIKDVGLLH
KRKELAKNLSGGMQRKLSVAIAFVGGSNIVILDEPTAGVDPYARRGIWELLLKYKKGRTI
ILSTHHMDEADILGDRIAIISHGKMCCYGSSLFLKKYFGSGYYLTLVKAGNEQITNERSG
VKQGQEKEETDETLRRTSLDEGIASQNWSNSDPTELTAVSKLVRRHVPEAVFLESIGQEI
TYILPYSGAKDGTFALLFKELDLEMADIGFTNYGISDTTLEEIFLKVAEDTGVDVEIPDN
KAPLVRDKTRSSRESKRQRQSLTNVGNTSDKVTGKRAEVKAKFTSRVEDVERVANVNGKG
SSVIMGWELIRRQFLALFIKRFHHARRSRKGIIAQVILPAVFVCLSLIFSVIIPPFAEYP
NLELQPWMYGLPQTTFYSNDGPPNNTEVAHVVDSLVNNPGFGTRCMANNPIPNLPCVPID
SKWTTPSVEPSINNILINGTWSMANPSPNCQCSTPQKTIMLPDCPPGAGGLPPPQRIQNT
TDTLQDLTGRNMTDFLLKTYEKAGKKRYGGISVGGVNSQVRMTEPEIEAVIRDLKSLFNS
PQDKTTEQILLNAETLLKELGTRDNVKVWFYNQAWHGIVSFLNVANNAILRGNLPTGRDP
REYGISSSSHPLNLTKVQLSYQALAATSTDLVVSICVIFAMSFIPASFVLFLIQERVNKA
KHLQFVSGVNPAVYWVANFAWDICNYIVPCLIVIIIFLCFQQKAYVSPPNLPALIWLLVM
YGWSITPMMYPASFIFSVPSTAYVVLTCVNLFIGINGSLATFVMELFDDDKISHINDIVK
QVLLIFPHFCLGRGLIDMGKNQAMATLFERFGEDRFQDPLSWDMVGKNLCAMAIQGAVMF
TITLLIQYKFCYKPRLISGKSFSKEDEDVDVARERARVHEGGAENDLLRICDLSKVYSGK
NIPAVDRVCLGVPAAECFGLLGINGAGKTTTFKMLTGDIAVSGGEAFLNRYSVRTEMRDV
HQNMGYCPQFDALNDLLTGREHLEFYARLRGVPEKEVTMVAEWGIQKLGLVKYSNKAAGT
YSGGNKRKLSTAMALIGCPPVVFLDEPTTGMDPKARRFLWDCILSVIKEERSVILTSHSM
EECEALCTRMAIMVNGQFKCLGSIQHLKSRFGDGYTVIVRVGGSPPALGPVEEFVHETFP
GSILKEKHHNTLQYQLPLRKGALVSIFSQFTTHQQRLGVEDYSVSQTTLDQVFVNFARYQ
HEEDNHATYDNKVDVSGEMPMKTQNSPVPESA
NT seq
6759 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcctgacacaacttggtctgctcctgtggaagaacttcactctccggaagaga
caaaaggtgcgtctggtggtggagttgttgtggcctctcttcctgttcttaatcctcgtc
agggtgagatcaaccaatcaacccatttatcagggcggatgtcattatccaaataaagcc
atgccgtcctccggcttgctgccttggcttcaaggcatgatgtgtaacataggcaacccc
tgtgtaaaccatcccacgccaggagaagcaccaggacaagtcaacaacttcaacaattcc
ataattgctgggatgttgatcgagctgcagtcacttctggcaaacagatccatcctaacc
aaattccagaggctttcagaggatgtggaccattgggctttgattatacagacatctaac
cctgcaaacggtcagcccattcctctgagaagtatcctaaatgacaatgaaatgttcacc
gcatatctgaagaagaacttgtccatgccattgacagtagtcaacagtctgatgaactca
aatattcaccggaatgagatgatgggcatttcaaggcaagacgacctgagaaccaccctc
tgcaatggaacaacacttgatagatatgtggaattcaccagcgcgtctgacaaggaggcc
tttcagaatgtcagctgctccctcccagaacaacagatgagacgagccaaggaagttttc
ctacaaaacctgaatacaagcaagatactcaccaacttacctttggatgtgaatccggca
gagacatttggattagtgaggagaactacagaagatgcattacatgtgattgatgaggtg
aacaagttgcagaactcaatactgttcaagtctgctaacacgctggatttcagagcggat
gcgttaggtagtctgaacatgctactatgtggcaaagctccagactccaactccagaaat
accaccatgaatttctctgcctctggactgacgaggaactacacagaaaacagtgaatta
tctgattccaggaaccgcagttccagtgccttctgcaaaatattgattgatactattgag
ggaactcctggcctacatgttgtctggactatgtttcggcccctaatccaagggaaggtc
ctctacacccctgacacacctgccactcgactaatggtcaaagaggcaaatagcacattc
aatgcattggccatgataaaagagctggcggatgcttgggaggatttcggacatcttgtt
tgggactactttcaaaatggccgccaagtcactacactgcgggccctgctggataaccct
gtgtttgtagccttgctcaaccaacggctcaaaggcacaagatggacggcagaactgctc
gccaacttcctgtacaatgggccccccgagggtcgccccacgggcatgccgccgaatgac
tggcgcaacgcgttcaacaccacaagccaaatcctggacctcctgaagaagttcattggg
tgcttgaacctggataagtttgaggctgccgacagtgagagacatctcatgactagagcc
ttggagctactagagagcaataggtactgggctggtatcgttttcgaagacctcaaccct
gccgccagccacccccctccttacgtcaaatacaagatccgcatggacattgataagggg
gagcgtacgaataagatcaaagaaaggggatggtctcctggggcccgtagcaactccttt
aacgacctgcgctatatatggggaggcttcgcctatctgcaggacatgatggaccatggc
ataatacggacacacacaaacaaatcccagccgctcggcgtgtttgcccagcaaatgcca
tatccctgctatgtggacgatgtgttcctccgctcgctggcacgctctctgcccctgtac
atgaccctggcctggatctactcggtggcaatgatcgtgaagggcatcgttatggagaag
gaggcgcgtctgaaggagacagtgaggatgatggggctgaggagctccacctactggctg
agctgggccgtgtccagcatgctgccgctggctgtcagtgctctcctcctcaccctcatc
ctcaagtatgggaaggtgctgcagtacagcgacccctctgtgatcttcgttttcatgctg
gtcttctgcatggccaccatcatggagtgtttctttatcagcgtgttcttctccaaggcc
aacctggcggcggcgtgcgggggcctcatctacttcgtcctctaccttccgcacctcctc
tgctatgcctggagggacgtcttggggttccaggtcaaaatcgctgtgagtttgctgtcg
tgtgtggccttcgggtatggctgtgagaacttcgccaagtatgaggagcagggcatcggt
atccagtggagtaacattgcccaaaatcctgagggagatcggtacagtttcatcgtgtcc
atcatcatgatgctcatcgacgccctcatctactggctgctcacgtggtacatcgagaac
gtcttcccaggccaatatggaatagccaagccgtggtccttccctttcatggcctcctat
tggtgcgggatgtctgcggtgcccaacgctgaccctagtcagttcaaggatcccatggaa
tacaatgattatttggaaaagccaccacccaatatgaaggcaggagtctcaatcaggaac
cttgtgaagatctataaaacgggaaaaaagcttgctgtggatggacttagtgtggacttc
tacgagaatcacatcacctctttccttggtcacaatggcgcaggaaaaacaaccactatg
tcgatcttgacgggactgttcgctccaacatcggggaccgctctcataaatggttacgat
atccgcacggacatggacaccattaggaagcatctgggaatgtgccctcagcacaacgtc
ttgttcaatgaccttacagtagaggagcacatctacttctatgccagattaaagggtcga
agccgtgatgaagtgaaaacggagatggaccaaatgatcaaggatgtagggctgctgcac
aaacgcaaggaacttgccaagaacctgtcagggggaatgcaaaggaaactgtcggtggcc
atcgcattcgtgggaggatccaacatcgtcatcctggatgaacccacagcaggggtggac
ccgtacgcccggagagggatatgggaacttctgttgaagtacaaaaaaggtcgcacaatc
atcctctccactcatcacatggatgaggccgacatcttgggagaccgcattgccattatc
tctcacggcaagatgtgttgttacggctcctccctgttcctgaaaaaatactttggcagt
ggctactacctcactctggtcaaggccggaaatgagcaaattaccaacgagcgcagcgga
gtcaagcagggccaagagaaagaggagacggatgagaccttgaggagaaccagtctggat
gaagggattgcaagccagaactggagcaactctgaccccacagagcttacagctgtcagt
aagctggtgcgtcggcatgttcccgaggcagtgttcctggagagcatcggccaggagatc
acctacatcctgccttacagcggggccaaggatggcaccttcgccctccttttcaaagag
ctggacctggagatggctgacattggcttcaccaactacggcatctcggataccacacta
gaggagattttcctcaaagtggcggaggacacaggtgtggatgtggaaattccagataac
aaagcacctttggtaagagacaagacaagaagttcaagggaatccaagcggcaacggcaa
agcctgaccaatgtagggaacacttcagacaaagtgactgggaaaagggctgaagtgaaa
gccaagttcacaagcagagttgaggatgtggagagagttgccaatgtgaatgggaagggc
tccagtgtgataatgggatgggaactaatccggagacaattcctggccctcttcatcaaa
cgtttccaccacgcacgcaggagccgcaaaggcatcattgctcaggtgattctgccagct
gtcttcgtctgcctgtctctcatcttttccgtcatcattcccccttttgctgagtaccct
aatctggagctgcagccatggatgtacgggctgccccaaacgacattctacagcaatgat
ggaccgccaaataatacagaggttgctcacgtggtggactctttggtgaacaatcctggg
tttgggactcgctgcatggctaacaaccctataccgaatctcccgtgtgtccccattgat
tctaaatggaccactccctcagtggaaccctctatcaacaacatcttaatcaacgggacc
tggagcatggccaacccttcccctaactgccagtgcagcactcctcaaaagactatcatg
ctgccagattgcccacctggagccggggggctgcctccccctcagaggatccagaatact
acggacacactacaggacctgacagggaggaacatgacagacttcctcttgaagacgtat
gagaaagcaggcaaaaaaaggtacggagggatttccgttggaggagttaactcccaagtc
aggatgactgaaccggaaattgaagctgtaatcagggatttgaaaagcctattcaattcc
ccccaggataagacgacagagcagatccttctgaacgccgagacgctcctgaaagagctt
gggaccagggataacgtcaaggtgtggttctacaaccaagcgtggcacgggatcgtttcg
ttcctcaacgtggccaacaacgccatcctgagggggaacctgcctacgggccgtgacccc
agggagtacggcatctcctcctccagccaccctctcaacctcaccaaggtgcagctctcc
taccaggcacttgctgccacctccaccgatttggtggtgtcaatctgtgtcatcttcgcc
atgtcctttatcccagcgagctttgtcctcttcctcatccaggagcgtgtcaacaaagcc
aagcacttgcagtttgtcagcggcgtcaacccggccgtctattgggtcgccaacttcgcc
tgggatatatgtaactacatagtcccgtgtctaatagtcatcatcatcttcctgtgcttc
caacaaaaagcctatgtgtcccctcctaacctaccagctttgatttggctacttgtaatg
tatgggtggtctatcacacccatgatgtacccagcctcgtttatcttcagtgtccccagc
acggcctacgtggtgctgacctgcgtcaacctcttcatcggcatcaatggcagcttggcc
acctttgtcatggagctgttcgatgatgataaaatctcgcacatcaatgacattgtgaag
caggtgctgctgattttcccgcacttctgtctgggtcgagggctcatcgacatgggcaag
aatcaggccatggccactttatttgaacgcttcggggaagaccgtttccaggaccccctc
agctgggacatggtggggaagaacctgtgtgccatggccatccaaggggcagtcatgttc
accatcactctccttatccagtataaattctgctacaaacccagactgatttctggaaag
tcattctccaaggaggacgaagatgtggatgtcgctcgggaacgtgcacgcgtccatgaa
ggcggtgccgagaatgacctgttgagaatctgcgatctctctaaggtgtactcagggaag
aacattcctgctgtggacagggtgtgtttgggtgttccagccgcagagtgctttggactg
ctagggattaacggggcaggaaaaacaaccaccttcaagatgctgacgggggacatcgcc
gtctccggaggggaggccttcctaaacagatacagcgtacggacagagatgagggacgtt
caccagaacatgggctactgcccgcagtttgacgccctcaacgaccttctcaccggacga
gagcatctggagttctacgccagactacgaggcgtaccggagaaggaagtcaccatggtg
gcagagtggggcatccagaagcttggcctggtcaaatattccaacaaggcagccggtacc
tacagcggagggaacaaacgcaagctctccactgccatggctctgattggttgtcctcct
gtggtattcctggacgagccaacgacagggatggaccccaaagccagacgcttcctgtgg
gactgtatcctgagtgtcatcaaagaggaacgctcggtcatcctaacatcacacagcatg
gaggagtgtgaggccctgtgtacacgcatggccatcatggtgaatggacagttcaagtgt
ctgggcagcatccagcatctcaaaagcaggttcggggacggctacactgtgatcgtgagg
gtgggcggctcgccccccgctctgggcccagtggaggagtttgtccacgagacctttccg
ggtagcatactgaaggagaagcaccacaacactctgcagtaccagctccccctcaggaag
ggcgctctggtcagcatcttcagccagttcaccactcatcagcagaggctgggtgtggag
gactactctgtctcccagaccactttggatcaggtctttgtcaactttgccaggtaccaa
catgaggaggacaaccatgctacttatgacaacaaagtggacgtgtccggcgaaatgcct
atgaaaactcagaactcacctgtcccagagagcgcctga
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integrated database retrieval system
