Oncorhynchus nerka (sockeye salmon): 115133570
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Entry
115133570 CDS
T07952
Name
(RefSeq) DENN domain-containing protein 4C-like
KO
K20163
DENN domain-containing protein 4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115133570
Membrane trafficking [BR:
one04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
115133570
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
DUF2464
PPR_3
PPR_long
PPR
CA109-like
Motif
Other DBs
NCBI-GeneID:
115133570
NCBI-ProteinID:
XP_029522826
LinkDB
All DBs
Position
LG8:complement(29215776..29281619)
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AA seq
1945 aa
AA seq
DB search
MIEDKGHRVTDYFVVAGLTDKSTPLEQDLSETKSSGPKAPITDLAVINKSAGETVPEGFT
CIESTYSAQQANLNHGSLKSPEIFLCYKRGHDKPPLIDIGVLYEGKERLIQGCEVIQATP
YGRCANVNNSSATSQRIFITLRRAPPVQPQNSLSVTDICVIVTSKGETPPHTFCKVDKNL
NCGMWGSSVFLCYKKSVSVSNSINYKAGLIFRYPEDDYESFPLSESVPLFCLPMGAKIEC
WTPNTRYPLPVFSTFVLTNSSGEKVYGAAIQFYEAYPIDLLSEKQKVQLGLLTTVEKKMI
PNRTVNTNKCICLLSRWPFFESFRKFLMFLYKLSVSGPHPLPIEKHISHFMHNVSFPSPQ
RPRILVQLSAHDTLMLAQPVCTPMPLSGADYSTLLINLGSENCATLLHFVLLESKILLHS
LRPAVLTGVAEAVVAMIFPFQWQCPYIPLCPLSLAGVLNAPCPFIVGVDSRYFDLYDPPP
DVVCVDLDTNTIYLSDEKKHSNWKNLPKKPCKSLFNSLTNLQHQLGIVRRTAQEGLAVEM
TPIEADFTWHKKMTSLEMEIQEALLRFMAHILKGYRSYLKPITQAPSEKATSADSLYDLQ
GFLKSRERAHQKFYSQLTKTQIFIRFIEECTFVSDKDTGLAFFDDCIEKLFPSDKGNDKG
TKVEGESSEDTKLMELDESQRSEHTVFVMPPEPPTTEDESDPPTRYSYKSFPRLRMDLFD
RPKEVIPALRSSTPGASLSSSPALLAKRTKQEIKLAYKMAKRFYSDPPLWAKCLFSHCYS
LWFICLPVGVRLVQSKSWAMQQAYNVLLKMRTSEVEVLDEVCYRVVMQLCGLYGQPVMAV
RVLVEMKKAGVHPNAITYGYYNKAVLEGPWPSRNRSGLFMWAKVRNVVRTVAQFKQALHR
MPATKGPTIITTVVSVSGDLLSHGSADHSSEVNGEDHTLFARSLIIGDATDNHCSTGGQS
DQGYGSKDELHQVQVDLAPSAAPLVDVDHRSKPKAQHNGGDIAGSVDSSVVVEEPTSPVE
AIPHVPSIVKLSTGGSFDTAMKRGETAPGKLFSLRSQSENVSLPEEGESTAPGGSGEAGP
AVQGQGQRQKAFSERSCSFSVESRAGMLMEKNGVDHIARRMGADARILADALSGCGTTQP
PTNPPSKALFKELESEEGRCPMLGKLSEEEGPVMDPTPLEEGLGKGEERMDGEDEMGLKL
EEEGDSGGRGDSSLPTLEMKEVDVGADPLSLLVSEHEELASVTSQELPHSLPAVVSRNLA
DEIEMYMSLRSPLGPKSSSMEFQQGGQGGDSSPDTAPVKQALERRSSLPVPPVKHPGGSS
GDSTPKRSPAAVTRSKTFAVMATKSRGVVASPRSSLTALVRSSQNGSLGSVINSISGMKM
DTLLSGPKMDVLKSGMKQAGNLASKVWGAVASAYSYSDDEDELAPGYRDRDSFPAGLDES
MLSGGGGGDSPTHRGPTQGLVSNGLTQSSTSLASSSSSSDTGRGPHSTLTPGRPGKGPDS
DQGSHHTSSSSIYQNCALEVLMSSCSLCRSCECLVYDEEIMAGWTADDSNLNTTCPFCRA
AFLPLLHVEFHDLRTNTAFYLKPSASGDSIHSASHQPTTTDSTVLGVGDAADTPRPDLIS
FPESSSEDPGEAPASQTATHKSLVPVPEPAQSDPLGLLEHQAGKRGTSLTRSNSVGGPLQ
SLVSYQRQPGHGVSTTSLPCSLTEVDGLGQKRPNPMPVSVPYLSPLVLRKELETLLENEG
DQVIYTHKFLSQHPIIFWNLVFYFCRLDLPSYLPGLILTSEHCNNGVQLPQTSLSQDSKQ
VYVQLLWDNINLHQEPGDPLYQSWRTLLEKKATLAPTDHQETRTFLNSIVRSIQTNDVYG
PINLLLREVKRHPEVKRQRGIYREILFLALVALGRENIDVEAFDREYRQAFDGLSTEQLK
ALHKIDRPPNSNVQWCLKCFGAPVI
NT seq
5838 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaggacaagggtcaccgtgtgaccgactactttgtggtggccgggctgacggac
aagtccacgccactggagcaggacctgtcggagaccaagtccagcgggcccaaggcgccc
atcactgacctggctgtcatcaacaagtcagcgggcgagacggtgccggagggcttcacc
tgcatcgagagcacctacagtgcacagcaggccaacctcaaccatggcagccttaagagc
cccgagatatttctctgctacaagaggggccacgacaagcccccgctcattgacatcggg
gtgttatatgaaggtaaggagcgtctcatccagggctgtgaggtaatccaggccacgccg
tatggccgctgtgccaacgtcaacaacagctctgccacctcgcagcgcatcttcatcacc
ttacgccgcgcgccacctgtccagccccagaactccctgtccgtcaccgacatctgcgtc
atcgtcaccagcaagggcgagacgccgccacacaccttctgcaaggtggacaagaacctc
aactgtggcatgtggggctctagtgttttcctgtgctacaagaaatccgtgtcggtgtcc
aactccattaattacaaagccggcctcatcttccgctacccagaggatgactatgagtcc
tttcccctgtcggagtctgtgcccctgttctgcctccccatgggggctaagatcgaatgc
tggacccccaacacacgctaccctctccctgtcttctccacctttgtgttaaccaactcc
tctggggaaaaggtgtacggtgctgccatccagttctatgaggcctaccccatagatctc
ctcagtgagaagcagaaggtgcagttgggcctgctcaccaccgtggagaagaagatgatc
cccaaccggacagtcaacaccaacaagtgcatctgcctcctttcccgctggcccttcttc
gagtcgttccgcaaattcctcatgttcctctacaagctgtccgtctcgggcccccacccg
ctgcccatcgaaaagcacatctcccatttcatgcacaacgtgtccttcccctcacctcag
aggcccagaatcttggtccagctctctgcacacgacaccttgatgctcgcacagcctgtg
tgtactcctatgcctctcagtggtgcagactacagtacactgctgattaacctgggctca
gagaactgtgccacactgttgcactttgtcctgctggagagtaagatcctgctgcactcc
ttgagacccgctgtactcactggggtagcagaggctgtggtggcgatgatttttccattc
cagtggcagtgcccgtacatccccctctgcccgctctccctggcgggggtcctcaacgca
ccttgtcccttcattgtgggcgtggactcccgctactttgacctctatgaccctcctccg
gatgtggtctgtgtggacctggacaccaacacgatctacctgtctgatgagaagaaacac
agcaactggaagaacctcccaaagaagccctgcaagagtctgtttaactccctgaccaac
ctgcaacaccagctgggcatcgtgcgtcggacggcccaggagggcttggcagtggagatg
acccccatcgaggcggacttcacctggcacaagaagatgacctccctggagatggagatc
caagaggccctgctgcgcttcatggcccacatcctgaagggctaccgttcctatctcaaa
cccatcacccaggccccctccgagaaggccacctctgcagactcactatatgacctacag
ggtttcctaaagagcagggagcgagcccaccagaagttctattcgcagctgaccaagact
cagatctttatacgcttcatcgaggagtgcacattcgtcagcgacaaggatacaggcctt
gccttcttcgacgactgcattgagaagctatttccctctgataaaggcaacgacaaaggc
actaaggtggagggtgagtcctcggaggacactaagctcatggaactagacgaatcacag
aggagtgagcatacagtcttcgtcatgcccccagaacctcccaccaccgaggacgaatct
gatccccctacccgctacagttataagagtttccctcggttgcgtatggacctgtttgac
cgtcccaaagaggtgataccagcgctgaggagcagtacaccaggggccagcctgtccagc
agccctgcactgctggccaagaggaccaagcaggagatcaagctggcctacaagatggcc
aagcgcttctactccgaccctccgctgtgggccaagtgtctgttcagccactgctacagt
ctgtggttcatctgtctgcccgtgggggtgaggctggtccagtcaaagagctgggccatg
cagcaggcctacaacgtcctgctcaagatgaggacgtctgaggtggaggtcctggatgag
gtgtgttaccgtgtagtgatgcagctgtgtggtttgtacggtcagccggtcatggccgtc
cgtgttctggtggagatgaagaaggcaggggtgcaccctaacgcgatcacctatggctac
tacaacaaggctgttctggaaggcccctggccaagtcggaaccgcagcggtctcttcatg
tgggccaaggttcgcaacgtggtgcgcactgtggcccaatttaaacaggcactccaccgg
atgcccgccacgaaaggacccaccatcatcacgacagtggtgtctgtgagcggtgacctg
ctgagccacgggagtgcagaccactccagtgaggtgaacggagaggatcacacgctgttc
gcacgcagcctcatcataggagacgccacggacaaccactgcagcacaggaggtcagtct
gaccagggctacggctctaaagatgagctgcatcaggtgcaagtggatttggctccatca
gcagcccctcttgtcgatgtggatcaccgcagcaagcccaaagcacagcacaatggtggg
gacatagctggctcggtggacagttctgtggtcgtagaggagcccaccagccctgttgaa
gccatcccacatgtccccagcatcgtcaagctgtccacaggagggagcttcgatactgcc
atgaagagaggagaaactgccccagggaagctgttctctctgcgcagccagagcgagaat
gtctctctgccggaggagggtgagtctacagccccgggtggctctggggaggcggggcct
gcagttcaggggcagggccagcgccagaaggccttctcggagcgcagctgcagcttcagc
gtcgagagtcgtgccggcatgctgatggagaaaaatggtgtggaccacatcgcgagacgc
atgggtgccgatgcccgaatcctcgccgatgccctttctgggtgtggcaccacccaacca
cctacaaatccaccatccaaggccctttttaaggagttggagtcagaggaggggcgttgt
ccgatgctggggaaactgtcagaggaggagggtcctgtaatggacccaaccccattggag
gaggggctagggaaaggggaggagagaatggacggggaggatgagatgggactgaagttg
gaagaggaaggagattcaggggggaggggtgatagctctctgccaaccctggagatgaag
gaggtggatgtgggggctgatcccctctccctgctggtctcagagcacgaagagttggcc
tccgtaaccagccaggagctgccgcactccctgcccgccgtggtgtcccgaaacctggca
gacgagattgagatgtacatgagcctgcgaagcccactgggccccaagtcctccagtatg
gagttccagcagggggggcagggaggggactcttccccggacactgccccagttaaacaa
gctctagaacggaggtccagcctccctgtgccccctgtcaaacacccagggggttcaagc
ggggactcgacgcccaaacgcagccctgctgctgtcacgcgctccaagacctttgccgtt
atggccaccaagagccgcggtgttgttgccagcccgaggtcgtcactgactgcgctggtg
aggtcatcgcaaaatggctcgctgggctcggtcatcaactccatctcaggcatgaagatg
gacaccctgctctctggtcccaagatggacgtgttgaagtcaggcatgaagcaggcaggg
aacctggccagcaaagtgtggggggctgtggcctcagcctattcctactccgatgacgag
gatgagctggccccgggctacagggatagggatagtttccctgccgggctggatgagtcc
atgctgtcagggggtggaggaggggacagtcccacccacagagggccaacccaaggcctg
gtgtccaatggactgacacagagcagcaccagcctggccagcagcagtagcagcagtgac
acagggagaggacctcactccacactgactccaggacggccagggaaaggtccagactct
gatcaaggctcccaccacaccagctcctcaagtatataccaaaactgtgccctagaggtg
ctgatgtccagctgctccctgtgtcggtcctgtgagtgtctggtgtacgacgaggagatc
atggcgggctggacggcagacgactccaacctcaacaccacctgtcctttctgccgcgcc
gcctttctgcctctgctccacgtcgagttccacgacctgcgcaccaacacagcgttctac
ctgaagcccagtgcatcaggagacagtatccacagcgccagccaccagcccacaactaca
gactccaccgtgctcggggttggggatgcagccgacaccccgcgcccggacctcatcagc
ttcccagaatcctcctctgaggacccaggggaggccccggccagccaaaccgccactcac
aagagtttggtaccggtaccggagccggctcagtcggaccctctgggcttgctggaacac
caggcagggaagcgagggacttctctgacgcgcagtaacagtgtgggcgggccactacag
agcctggtctcttaccagagacaacccggacacggcgtgtccaccaccagcctgccctgc
agcctgacagaggtggatggcctgggacaaaagcggcccaaccccatgccagtgtctgtg
ccctacctcagccccctggtcctccgtaaagaactggagaccctactagagaacgagggg
gaccaggtgatctacacccataaattcctgagtcaacaccccatcatcttctggaacctg
gtgttttatttctgtcgtctggacctgcccagctacctgccgggcctcatcctcacctca
gaacactgcaacaatggagtacagctcccccagacctccctgtcccaggacagtaaacag
gtgtatgtgcagctgctgtgggacaacatcaacctgcaccaggagcctggcgatcccctc
taccagagctggaggaccctgctggagaagaaggccaccctggcccctacggaccatcag
gagacacggaccttcctcaacagcatcgtccgcagcatccagacgaacgacgtatacggc
cccatcaatctgctcctccgagaggtcaagcggcacccagaggtcaaacgccaaaggggt
atctatagggagatcctcttcctggcgcttgtggcattgggacgggagaacattgacgtc
gaggcctttgaccgtgaataccgccaggcctttgatggtctgagcacagagcagctcaag
gctctgcacaagattgaccggccacccaacagcaatgtccagtggtgcctcaagtgcttt
ggagctccagtcatctga
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