Oncorhynchus nerka (sockeye salmon): 115133594
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Entry
115133594 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase DTX4-like
KO
K06058
deltex [EC:
2.3.2.27
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
115133594
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115133594
Enzymes [BR:
one01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115133594
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
115133594
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DTC
WWE
zf-C3HC4
zf-RING_11
zf-RING_UBOX
zf-rbx1
zf-RING_2
PHD_NSD
zf_RING_Vps8
zf-ANAPC11
zf-UDP
zf-RING_Vps41
PHD
Motif
Other DBs
NCBI-GeneID:
115133594
NCBI-ProteinID:
XP_029522863
LinkDB
All DBs
Position
LG8:29400720..29421134
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AA seq
745 aa
AA seq
DB search
MLLASAVVVWEWLNEHGRWRPYSPAVSHHIEAVIRNDPRGGSVVLGQVDTRLSPYIVDLH
SMHQFRQDTGTLRPVRRSFYDPTSAPGQGWLWEWENDTGSWTAYDTEVGIAIQAARDRQQ
PWLDLAPLGFCYLIHFQSMTQINGQTQRCRRIQRRSDLAYPLVSGPLPKSHHAWGPSPGG
LLGVSGVGMGVGLSGMGNGNGSAYPSGALPASAITSLGQPCACQQCMLLLSVKAGAMATA
HTLGRRPPQNKPPSPKLGGGYSAMGGSYSLTLPRPPSSMGRSLPPHRTSVVGASGGLGVG
GGGGFAHSLSLLGSATAALSLSSTRPPPPPLPLPPPPPPPPSSITSNSATLPPSSSFSMA
SMASSAPLSMPAPPPPLISTSASSCTPSPSARVLGPVSSAAAACAAPLPPRASLAGLSRP
ALQRIAMAQSRALIASGVPTVPVKNLNGSSPVHPALAGITGILMSAAGLPVCLTRPPKLV
LHPPPVSKSDIKPVPGLGHCCRKTTKKQARKGKTPEEVVKRYLQKVRSPPEEDCTICMEA
LPGPSGYKGPGVGGIQRAESVGRLAQCGHQYHLQCLVAMYNNGNKDGSLQCPTCKTIYGV
KTGNQPPGKMEYHVIPHSLPGHPDCKTIRIIYNIPPGIQGPEHPNPGKPFTARGFPRHCY
LPDSEKGRKVLRLLLVAWDRRLIFSVGTSSTTGESDTVIWNEVHHKTEFGSNLTGHGYPD
PGHLDNVLEELKAQGITEEECLPRD
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgttactagcgtcggccgtggtggtatgggaatggctgaacgagcacgggcgctggcgg
ccttacagcccagcggtctctcaccacatcgaggcagtcatccgcaacgacccacggggt
ggtagtgttgtcttaggccaggtggacactcgcctctcgccctacatcgtcgacttgcat
tccatgcaccagttccgacaagatactggtaccctcagaccggttcgccgcagcttctac
gaccccacgtcggcgccgggtcagggctggctgtgggagtgggagaacgacacaggctcg
tggacagcctacgacacagaggtgggcatcgccatccaggcggcacgcgaccgccagcag
ccctggctggacctggcgccactgggattctgctacctcattcacttccagagtatgacc
cagatcaacgggcagacacaacgctgccgccgcatccagcgccgctctgacctggcttac
ccacttgtttcgggtccccttcccaagtcacatcacgcctgggggcccagccccggggga
ctgttgggggtgtccggagtaggcatgggggtggggttgagcgggatggggaacgggaac
ggtagcgcctaccccagcggcgccctgccagcctccgcaatcacctccctgggccagccc
tgcgcctgtcagcaatgcatgctgctcctaagcgtcaaggcgggcgccatggcaacagcc
cacaccctgggcaggaggccaccccagaacaagcctcccagccccaaactgggtgggggt
tactcggccatgggggggtcctactcgctcaccctcccacgtcccccctcctccatgggc
aggtcccttcctccccacagaacgtctgtggtcggagctagcggtggcttgggggtcgga
gggggcggtggctttgcccactcactctccctcctgggttcggccaccgctgccctgtcc
ctctcctccacccggccccctcccccgcctctaccccttccgcctcctccgcctcctccg
ccctcctccatcacttccaacagtgctactcttcccccctcctcttccttctccatggca
tccatggcttcctctgcccctctgtcgatgcccgcgcccccccctcctctcatctccaca
tcagcttcctcctgcaccccctcgccctctgcccgcgtcctggggccggtgtcttcagcg
gcggcggcctgtgccgcccccctacctccccgtgccagcctggctgggctgagccgaccc
gccctgcagcgcatcgccatggcccagtccagagcccttatcgcctccggagtcccaacg
gttcctgtgaagaacctcaatggatccagccctgttcaccctgcattggcaggtattaca
gggatcctgatgagcgccgcaggacttcctgtctgtctgacccgaccccccaagctggtg
ctccacccccctcctgtcagcaagagtgacatcaagcccgttcccggcctcggccactgc
tgccgcaagaccaccaagaagcaggctcgcaaaggcaagacccccgaggaagtagtgaag
aggtaccttcagaaggtacgcagtcccccagaggaggactgcactatctgcatggaggcc
ctgcctgggccctcgggctacaaaggccccggtgttgggggcatccagcgggcagagtcg
gtgggtcgcctggcccagtgtgggcaccagtaccacctacaatgtctggtggccatgtac
aacaatggcaacaaggatggcagccttcagtgccccacctgcaagaccatctacggcgtg
aagacgggcaaccagccacctggcaagatggagtatcacgttatcccccattcgctgcct
ggccaccccgactgcaagaccatccgcatcatctataacatcccgccaggcatccagggc
cctgagcacccgaacccaggcaagcccttcaccgcccggggattcccccgacactgctac
ctccctgacagcgagaagggacgcaaggtactgaggctgctgctggtggcgtgggaccgg
cggctcatcttctcagtgggcacatccagcaccacgggcgagtcggacacagtcatctgg
aatgaggtgcaccacaagacggagttcggctccaacctgacgggacacggctaccccgac
ccaggccacctggacaacgttttggaggagcttaaggcccaggggatcaccgaggaggag
tgcctacccagagactga
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