Oncorhynchus nerka (sockeye salmon): 115133977
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Entry
115133977 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: receptor-type tyrosine-protein phosphatase beta-like
KO
K05694
receptor-type tyrosine-protein phosphatase beta [EC:
3.1.3.48
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
115133977
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
one01009
]
115133977
Enzymes [BR:
one01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
115133977
Protein phosphatases and associated proteins [BR:
one01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
115133977
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Y_phosphatase
PTP_tm
DUF4249
REJ
Glyco_hydro_66
PTPlike_phytase
DSPc
Motif
Other DBs
NCBI-GeneID:
115133977
NCBI-ProteinID:
XP_029523317
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All DBs
Position
LG9a:complement(4295012..4324381)
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AA seq
1942 aa
AA seq
DB search
MSKTDGERRNVSVRTDPVSPSRLDVLPDQVQAAQYKSQGHGGFPGLHVSWPRSRGLVDWY
ELTLQDTKTGESRNTRIMGTAVPQLGFTALTPGTLYGLSLVAIAGNKTAPPVLATATTAP
SAISGLQLLAFSNSLGVSWQPGPGRRERFRVLLRERQGSLVRNVTLKSSVTSHILNDLLP
GTLYTVTVVTEAGGLQNAVFKQAVTVPAAVSDLLLENNGSLDSLRASWVTAMGSVDTYLV
SLATLGSADQDRTLPPNATEVVFSGLTPGRSYQLSMRSKVGDQMTEAVTMGRTVPDKVSQ
LTMVGLSDGSTLKMTWSPPRGEWENYRILLMNATVALVNKTLSRPVRQYSFSGSSLGLVP
GRLYTAQIMVEAGPFGNIAHCQGMLAPRPVQQLVVCHSDETSLSVLWSLPVGEWDGYTVV
LRQGNTVVSQRTLSRDVRECTFNVLTPGHQYAITVTTNSGGLNSSTSVIGRTTPAQVTSL
RVTNGGSTDSLQTQWERATGELDSYHVLLIHDSSVIKNESAPAHTMAYSFLALKPGALYR
VVVTTIRAGQVSRQSVAEGRTVPAAVGEVTVSNNGRMDFLSVSWRPAKGDVDSYLVTLGD
QEKTVHTLAVSKSSPECVFKSLVSGRLYNISITSRSGAYENHTIVQERTQPSSVQNPTAI
HSARDDYLKVYWRHAAGDFDYYQVVIKHNNIFHQNKTVMKSQNECVFNGLVPGRLYTVIV
STWSGNYETSVSTDGRTFPAAVRSLALAERGTEDLRVTWLAAPGDVDHYQVQLLFNDMKV
FPPITLGSSVGVCLLSSLTPGRLYKIHVSTFSGPNQRAQFIEGRTVPSKVKNIHVSNNGQ
SSSLKISWTPGQGDVDSYSVSLLLGGPEARRLETRPVPKHQNELGFSSLQPGQLYSVTIR
SISGILLNNNTASGRTVPSAVTGLQADNRHTTCTIQVSWQEARGVADGYSLQLLDDRGHL
VTNSSQASSGSMPLQHRFDGLTPGKRYRVLVHTTSGGVHSEGVTAEARTRPAAVSDLSIQ
ANSSSSLSFHWSPPQGEFEGYDLYLYNGDDTLYDRRSGQPSTLQVSFQGLRPGAPYRMVV
LTRSGEQTNDSAIWARTIPAAVTSLQAQSRNQSEMLWVSWKRAVGELNGYLLSLYNPDGS
QQAEETLGPDAMVHVFPTLIPGRLYHAVILTRSGELTNRATAHGRTAPRPPTSVSFGGVT
NTSLELTWSGPAGSDYDDFDLQWAPRDHLSVFNPYHTRTSGSRILKGLYPGRLYNFILRT
VSGAGGGVGGGGSSAYSPPIYKSIRTKPERVQYLHCRPQNSTSISCSWAPPEADFDSYTI
ECLQDSHALVYSQRTGRDRTLYHITQLEPHKRYTVSVKAISDSMTSEAAEDSVVTMIDRP
PLPSLTTRVNDRAALVTKNTILFKVNCSWFSDVNGAVKFFTVVVTESEDDGNLQPEQHHP
LPSYLDYKSNSSIKAYQTSYFPSRCTEGPGDSGTQSFEISLGTGMDTLGGGCDHLQAQDR
EQNPDTHRDHNPFCDGPLKPKTAYRLSVRAFTQLFDEEQSRYNPPLYTDTYLSLPLVTEA
EPLSGVIEGISASMFLIAMMVGVTALLICRQKARKVSVQEGPVVRMSMRRERPTSGVLRG
NRRISSPIKIMHFESHYIKLQADSNYLLSDEYEDLKDVGRNQPLDTALLPENRGKNRYNN
ILPYDSTRVKLSYVDDDPCSDYINASYIPGNNFRREYIATQGPLPGTKDDFWKMVWEQNV
HNVVMVTQCVEKGRVKCDHYWPFDQDPLYYGDLIVQMLSESVLPEWTIREFKICSEDQLN
YSRVVRQFHYTVWPDHGVPETTQSLIQFVRTVRDYINRTSGSGATVAHCSAGVGRTGTFI
SLDRVLQQLDTKDTVDIYGAVFDLRLHRSHMVQTECQYAYLHQCVRDVLRARKLRSEQEN
PLYPIYENVNPDPQRDMVYASY
NT seq
5829 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagactgatggagagaggagaaacgtatcagtgcgaacagatccggttagtcca
tccaggttggacgtcctaccagaccaggtccaggcagctcagtataagagtcagggtcac
ggtggcttcccaggcctgcatgtatcctggcctcggtctcgcgggctggtcgactggtat
gagctcacactacaggacactaaaacaggagagagccgcaatactcgcatcatgggcact
gccgtccctcagttaggctttaccgccctcacccctggcaccctttatggcctcagcctg
gtggcaatagctgggaataaaactgccccaccagtgctggccactgcaaccacagctccc
tcagccatcagcggcctccagctcttggccttctccaacagcctgggggtttcttggcag
cccggcccaggcaggagagagcgtttcagagtgctgctgagggagcggcagggcagcctg
gtcaggaacgtcaccctgaagagtagcgtcacctcccacatccttaatgacctgttgcct
gggacactgtacactgtcactgtggtgactgaggctggaggccttcagaatgctgtcttc
aaacaagcagtcacagtccccgcggcggtgtcagacctcctcttggagaacaacggcagt
ctggactcattgagggcctcctgggtcacagctatgggcagcgtggacacatacctggtc
tcccttgcaaccctgggttcagccgatcaggacaggacgctgccacccaatgccacagag
gtggtcttcagcggcctgacccctggacgatcctatcagttgtctatgaggtcaaaggtc
ggagaccagatgactgaggctgtgaccatgggtagaactgtgccagacaaggtgtctcaa
ttgaccatggtgggcctcagtgacggcagcactctgaagatgacatggtcaccgcctaga
ggggaatgggagaactaccgcatcctgctaatgaatgccacagtggctctggtcaataag
acactaagcaggccagtgagacagtactccttctctgggtcttccctggggctggtgcct
ggcaggctttacacagctcagatcatggtggaggctggcccatttggcaacattgctcac
tgccagggaatgctagcacctcggcctgtccagcagctggtcgtctgtcacagtgatgag
acgtctctgagcgtgctgtggtctctccccgtaggggagtgggacgggtacactgtggtc
ctgagacaggggaacactgtcgtgtcccagaggacactgtcccgtgacgtcagggagtgc
accttcaacgtcctcacacccggacaccagtacgccatcactgtcacgaccaacagtggg
ggcctaaacagctcaacttcagtgattggacgaaccaccccagcgcaggtgaccagtctg
cgtgtgaccaacggtggcagcacggacagcctccagacccagtgggagcgggcaaccgga
gagctggactcataccacgtgctgctcatccatgacagcagcgtgatcaagaacgagagc
gccccagcccacaccatggcctacagcttcctggccctgaagcctggagccctctacagg
gtggtagtaaccaccatcagagcaggacaagtctccaggcagagcgtggcagagggacgc
acagtccctgctgccgtaggcgaggtgacggtcagcaacaacggtcgtatggacttcctc
agcgtgtcatggcgtccggccaaaggtgacgtggacagttatctggtcactctgggggac
caggagaagacggtccacaccctggccgtgtccaaatccagcccagagtgtgtgttcaag
tccctggtgtctggacggctctataacatctccatcacctccaggagtggtgcctatgag
aatcacaccatcgtacaggaacgcacacagccctctagtgtccagaaccccacagcgatc
cactcggccagggatgactacctgaaggtgtactggcgccatgcggccggggactttgac
tactaccaggtggtcatcaagcataacaacatcttccaccagaacaagacggttatgaag
agccagaacgagtgtgtgttcaacggcctggtgcccgggaggctgtacactgtcatcgtc
agcacctggagcgggaactatgagaccagcgtgtctacggatggaaggaccttccctgcg
gcggtgaggtcactagccctagctgagcggggaacggaggacctgcgtgtcacctggttg
gctgctccgggggacgttgaccactaccaggtgcagctcctcttcaatgacatgaaggtg
ttcccgcccatcaccctgggcagcagcgtgggggtgtgtctcctctcctccctcaccccg
ggacgcctctataagatccatgtttctacctttagcggccccaaccagagggcccagttc
atagagggcaggacagtccccagcaaagtcaagaatatccacgtgagtaacaatggccag
agcagcagtctgaaaatcagctggaccccggggcagggtgacgtggacagctactccgtg
tccctattgctgggtggaccagaggcacgcaggctggagacgcggcctgtacccaaacac
cagaatgaactagggttcagctccttgcagcctgggcagctgtacagtgtgaccattaga
tctatcagtggcatactgttgaataacaacacggccagcggacgcaccgtcccttctgca
gtgacggggctgcaggctgacaacagacacaccacctgcactatacaggtgagctggcag
gaggccaggggcgtggcagacggatacagcctgcagctcctggacgacaggggacacctg
gtcaccaacagctcccaggcatcctccggctccatgccgctccagcatcgcttcgacggc
ctcaccccagggaagaggtaccgcgtcctggttcacaccaccagcggaggggtccacagc
gagggcgtcaccgctgaagcacgtacacgtccggcagcggtcagcgacctctccatccag
gccaacagcagcagcagcctgtccttccactggtctcccccgcagggagagttcgaaggt
tacgacctctacctgtacaacggagatgacacgctgtacgaccggcgtagcggccagccc
agcacactgcaggtctccttccagggcctgaggcctggtgccccctacaggatggtggtg
ttgacacgtagcggagagcagaccaacgactcagctatctgggccaggactatcccggct
gcagtgacctccctccaggcacagagtcgtaaccagtcggagatgttgtgggtgtcatgg
aagcgggcggtgggggagctaaatggctacctgctctccctctacaacccagatggctcc
cagcaggcagaggagacgttagggccagacgccatggtgcacgtcttccccacgctgatc
cccgggcgtctctaccatgctgtcatcctcacacgcagcggagagctcaccaacagggcc
accgctcatggacgtaccgcccccagaccccctacctctgtatcatttggtggagtcacc
aacacctccctggagctgacttggagtggtcctgcaggcagcgactatgacgactttgac
ctgcagtgggcccccagggaccacctgtctgtattcaacccctaccacacccggacctcc
gggagccgcattctgaaggggctatacccaggacgcctgtacaacttcatcctgcgtacc
gtcagtggggctggtggtggtgttggtggtggtgggagctctgcctacagcccacccatc
tacaagagcattcgaacaaagccagagcgtgtccagtacctgcactgccgcccccagaac
tccacctccatctcctgctcctgggcccctccggaggccgactttgactcatacactatt
gagtgcctccaggactcccacgccctggtgtactcccagcggacaggccgtgacagaacc
ctctaccacatcacccagctggagccacacaagcgctacaccgtctccgtcaaggccatc
tccgacagcatgaccagcgaggccgccgaggacagcgtggtcaccatgatcgaccgtcca
ccccttccttccctgaccactcgggttaacgacagggctgctcttgtcaccaaaaacacc
atcttgttcaaagttaactgcagctggttcagtgatgtcaatggagccgtcaagttcttc
acagtggtggtgaccgagtctgaagacgatggaaaccttcaaccagagcagcaccaccct
ctgccctcttatctggactacaaatccaacagttccatcaaggcctaccagaccagctac
ttccctagccgctgcacagaggggccaggagacagcgggacccagagctttgagatcagc
ctgggtacaggcatggacaccctcgggggtggctgtgaccacctacaggcccaggacagg
gagcagaacccagacacacacagagaccacaacccattctgtgatggcccactcaaaccc
aaaactgcatacaggctcagtgtgcgtgcgttcacccagctctttgacgaggagcagagc
agatacaacccacccctctacacagacacttacctgtcccttcccctggtaacagaagca
gagcccctgagcggtgtgatcgagggcatcagtgccagtatgttcctcattgccatgatg
gtgggagtcactgcactgctcatctgcagacagaaggctcgcaaagtgagtgtgcaggag
gggccagtggtccgaatgagcatgaggagagagaggcccacctcaggagtgctcaggggt
aatcgtcgtatttcaagccccatcaagatcatgcactttgagtcccactacattaaactc
caggctgactccaattacctactgtctgatgagtacgaggacctgaaagacgtaggaagg
aaccagcccctggacacagccctgctgccagagaacagagggaaaaaccgatacaacaac
atcctgccctacgattcaacccgtgtgaagctgtcctatgtggatgatgatccgtgctct
gactacatcaatgccagctacattcctgggaacaacttccgtagggagtacatcgccact
cagggcccacttcctggaaccaaagatgacttctggaagatggtgtgggagcagaacgtc
cataatgttgtcatggtgacccagtgtgtggagaaaggcagggtaaagtgtgatcactac
tggcccttcgaccaggaccctctgtattacggagacctcatagttcagatgttgtctgaa
tctgtgctgccagaatggactatccgggaattcaagatctgtagcgaggaccagttgaac
tactccagggtggtgcgtcagttccactacacggtgtggcctgaccacggcgtcccagag
accacccagtcactcatccagtttgtcaggactgtcagggactacatcaacaggacctcc
gggtctggggctaccgtggctcactgcagtgctggcgtgggccgcacaggcaccttcata
tccctggacagagtgctgcagcagctggacaccaaggacacagtggacatctacggagct
gtcttcgacctgcgcctccaccgctcacacatggttcagactgagtgccagtatgcttac
ttgcaccagtgtgtgagggacgtcctccgagccaggaagcttcgcagtgagcaggagaac
cccctctaccctatctatgagaatgtgaaccctgacccccaacgagatatggtatatgcc
agttattaa
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