Oncorhynchus nerka (sockeye salmon): 115133984
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Entry
115133984 CDS
T07952
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115133984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115133984
03036 Chromosome and associated proteins [BR:
one03036
]
115133984
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115133984
Coactivators
SAGA/TFTC/STAGA complex
115133984
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
115133984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
115133984
NCBI-ProteinID:
XP_029523330
LinkDB
All DBs
Position
LG9a:complement(4631750..4655193)
Genome browser
AA seq
998 aa
AA seq
DB search
MAGASDPLEDMLFNEVDEKAVSDLVGSLESQLVSQKTSPATYSNIKREGSTGAVSQFSGK
LRDQAGSLEPPQQGHPKAALNAEPIANQAMSNKIISASTSSITTGGVLNAGTNLQTYGAA
SQTISTAPPGSVTLPAQSTSFNRGTILGPAGTSAVTVSNPNITTTTTTTIRTASPGLQSF
NGNTGALKLVNSPAASQVGSGSSTVVSTVSAGNSNIIVSMTSQPPSLPNFTGPQQSAVAT
TPTIALQRQPSPMAIASQNGVIDPKVSAVVTQGAGSLGVTTSQVMNHSNTLMHTKMVAPN
QPVSAGQSIILGGSPPPVVVNSPISQPQSVASPTLTAGVKPTVNGVGQPTVTIVRPPGAP
VMATPVQQQRPGLLASTTRTAAPQLAVRPPQKTTIQLPPGFTIPPGMVLVRTDTGQLVMV
TQQVLAQAQAKTQQGQAAVSNISPQPGIPTAGANIRVSTPSQAPGTPQAVRLASPFQARM
AQSPSPSSPAIQKAITVAPAGASVSVKMTTPQKAQSVITGGQALVKPGAVRPTITLNTAA
ASASGSPIATVSQEMQENVKKCKNFLSTLIKLASHNSPSPDTSKNVKTLVQDLLDAKIEP
EEFTTSLQAELKSSPQPYLIPFLKKSLPALRLSLLNNQQSLLASTSASALAVPSTSTIRP
RLPTTISPATGIVRSPTTALGVRRPGVQGVQTRMPMVITQSIRPQGVVTRGPSIIPGRSP
VGIGAQASANQKKLNEPGGGTFRDDDDINDVASMAGVNLNEENARIMATNSELVGTKIRS
CKDEAFLPPGLLHRRIMEAAKRFGVTEVPAETVNYISHATQARLRSMLEKVSTIAQHRTD
GGKDEEWYEPSTDVRAQLRFFEQLERMEKQRKDEQEREVLLKAAKSRARQEDPEQARLKA
KAKEMQQAEQAQIRQREANLTALAAIGPRKKRKMDSPGGSTSGTEVASGSGDGSSTAASS
RQQLRQRITRVNLRDFIFCLEQERATSRSLLLYKALLK
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcctccgacccactggaggacatgctcttcaatgaggtagacgaaaaagct
gtaagcgacttagtaggctctttggaatcgcaacttgtcagccaaaagacttcgcccgcc
acatattctaatatcaagcgagaaggatctacgggcgctgttagccagttctcagggaaa
ctgcgtgatcaagcggggtctctggagccgccacaacaaggacacccaaaagcggcgtta
aacgcggaacccatcgcgaatcaggcgatgtccaataagattatcagcgcttccacttct
tccatcactactgggggtgttttaaacgctggtactaatctacaaacatatggagccgca
tctcaaaccatttccaccgcaccaccaggatcggtaactttgcctgctcagtcgactagc
ttcaacagagggactattttgggtcctgctggcacatcagcggtgactgtttccaatcca
aacatcacaacaacaacaacaacaactatcaggactgcttcacctggtttacagagtttt
aacggtaacactggagctctgaagttggtcaactcgccagcagcttcccaagtcgggtca
ggcagcagcactgttgtaagtactgtcagtgcgggcaattccaatatcattgtgtccatg
acttcacaacctccttctctgccaaactttactggacctcaacagtctgcagtggctact
actcccactattgcactgcaaagacagcccagccccatggccattgcctcacagaatggg
gtaatagaccccaaggtttctgcagtggtcacacagggtgcaggttccctaggggtcacc
acctctcaggtcatgaaccacagcaacactctcatgcacactaaaatggtggcacccaac
cagccagtctctgctggccaatcaataattctcggagggtctccccctcctgttgttgtt
aactcaccaataagccagccacagagtgtggcgagtcccactctcacagctggggtgaaa
ccaactgttaatggagttggtcagcccacagtgaccatcgtgaggccccccggtgctcct
gtgatggctacccccgtacagcagcagagacctgggctgttagcaagtacaacgaggact
gctgcaccacagctggccgtcagaccaccacaaaagaccaccattcagttaccccctgga
tttaccataccacccggtatggtgctggtgcgtacggacacgggacagctagtgatggtg
actcagcaggttctagcccaggcccaggctaagacccaacaaggccaggctgctgtctcc
aacatctccccccagcctggaatccccaccgctggggccaacatcagagttagcactccc
agccaggcccctggtacgccccaggctgtccgtctggcgtcccctttccaggcaagaatg
gcccagtccccctctccctctagccctgctatacagaaggccataaccgtggcacctgcg
ggtgcgtctgtgtcagtgaaaatgaccacccctcagaaggcccagtctgtgatcacaggg
ggccaggccttggtcaagcctggtgctgtacggcccactatcaccctgaacactgcagca
gccagtgcctctggaagccctattgcaacagtctcccaggaaatgcaggagaatgtgaag
aagtgcaagaacttcctgtccaccctgatcaaactggcgtcccacaactccccctcccct
gacacatctaagaacgtcaagaccctggtgcaggatctactggatgctaaaatcgagcct
gaggaattcaccacgagtctgcaagctgagctgaaatcctctccacagccgtacctcatc
cccttcctcaagaaaagcctccctgccctgcggctgtcccttctcaacaaccagcagtct
cttctggcctccacctccgcttctgccctggccgtcccttccacctccaccatcaggccc
cggctccccaccaccatcagccctgccacaggcatcgtcaggtcacctaccactgccctg
ggtgtgagaagaccaggggtccagggggtccagacccgcatgcccatggtcatcactcag
agtatacgaccgcaaggcgtagttacaagaggaccctctattatcccgggcagaagtcct
gtgggcattggtgcccaggcctctgccaatcagaagaagctgaatgagcctggaggtggg
acgttcagagatgacgatgacatcaatgacgtggcgtccatggcgggggtaaacctgaac
gaggaaaacgcccgcatcatggccaccaactctgagctggtgggcaccaagatccgctcc
tgtaaggacgaggccttcctcccgccaggcctgctgcacagacgcatcatggaggctgcc
aagagatttggggtgaccgaggtcccagctgagacagtgaactacatctcccatgctacc
caggccaggctgagatccatgctggagaaagtgtccactatcgcccagcaccgcaccgac
gggggcaaggatgaggaatggtatgagccatcgacagacgtcagggcccagctccgcttt
tttgagcagctggaaaggatggagaaacagaggaaggacgaacaggagagagaggtccta
ctcaaggctgccaagagtcgcgccagacaggaggacccagaacaagctcggttgaaggcg
aaagctaaggagatgcagcaggcggagcaggcccagatccggcagcgtgaagccaacctc
actgccctggctgccatcgggccccgcaagaaacgcaagatggactcgccagggggctcc
acatcgggcacagaggttgcttcgggttcaggggatggctcttccacagctgcctcctcc
cgccaacagctccgtcagcggatcacgcgagtcaacctcagggactttatcttctgcctg
gagcaggagagggccacatccaggtccttattgctttataaagctctcctgaagtag
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integrated database retrieval system
