Oncorhynchus nerka (sockeye salmon): 115134101
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Entry
115134101 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC2-like
KO
K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:
2.7.7.6
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03020
RNA polymerase
one04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
115134101
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
115134101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115134101
Enzymes [BR:
one01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
115134101
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
115134101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
115134101
NCBI-ProteinID:
XP_029523602
LinkDB
All DBs
Position
LG9a:11298539..11347135
Genome browser
AA seq
1132 aa
AA seq
DB search
MEILGEEFGDMTHQQLAAPVNTIEEKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMK
ANEKITSDADPMWYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYT
RGSQRIIRNALPIGRMPIMLRSSNCVLTGKTHMEYSKLNECPLDPGGYFIVKGQEKVILI
QEQLSKNRIIVEQDRKGAVGASVTSSTHEKKSRTNMIVKQGRFYLRHNALSEDAPIAIIF
KAMGVESDQEIVQMIGTEEHVMANFSPSLEECQKAQIFTEIQALKYIGNKVRRQRMWGGP
KKTKMEEARELLASLILTHVPVKEFNFRAKCIYLAVMVRRVILAQGENKVDDRDYYGNKR
LELAGQLLSLLFEDLFKKFNSELKKISDQIIPKQRAAQFDIVKHMRQDQITNGMVNAIST
GNWSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCP
SDTPEGEACGLVKNLALMTHITTDMEDGPIVKLAFNLGVEDVNLLCGEELSYPSVFLVFL
NGNILGVIRDHQRLVYTFRLMRRAGFINEFVSISTNLTDRCVYVSSDGGRLCRPYIIVKK
GQPMVKNKHIEELTQGYRTFEDFLHESLVEYLDVNEENDCQIALYEHMINKDTTHLEIEP
FTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLGYPQKPMVK
TRTIELIDFEKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGFGRCLVYKNAKCTLRR
YTNQTFDKVMGPMLDAATRKPIWRHSILDADGICCPGEKVENKQVLVNKSMPTVTQTPLE
GSAQPGQPQYRDVPVSYKGSTDSYIEKVMISSNADDAFLIKILLRQTRRPEIGDKFSSRH
GQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVMDGRFHYG
TAFGGSKVKDVCEDLIRYGYNYQGKDYVTSGITGEPIEAYIYFGPVYYQKLKHMVLDKMH
ARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCG
QCGLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLARYNE
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atggaaatccttggagaggagtttggagatatgactcaccagcagctcgcggctcctgtc
aatactatagaggaaaaatggaaactattgccagcttttttgaaggtgaaaggtctggtg
aaacagcacattgactccttcaactacttcatcaatgtggagataaagaagataatgaaa
gcaaatgaaaagatcacaagtgatgctgatcccatgtggtacctaaagtacctcaatata
tacgttggcatgcctgatgttgaagagagcttcaatgtaaccagaccagtgtctccacac
gagtgtcgtctcagggacatgacttactctgcacccatcacagtggacatcgagtacacc
cgtggcagtcagagaatcatccgcaatgctctgcccatcggaaggatgcccatcatgctg
cgcagctctaactgtgtcctcacggggaagacgcacatggagtactccaaactcaacgag
tgccctctggacccagggggctatttcattgtcaaaggtcaggagaaggtcattctgatc
caggagcagctgtcaaagaaccgcatcattgtggagcaggacaggaagggggcagtagga
gcctctgtgaccagttccacccatgagaagaagagcaggaccaatatgatcgttaagcag
ggacgcttctacctaagacacaacgcactgtcagaggatgcccccattgccattatattc
aaggctatgggtgtggagagtgaccaggagatagtgcagatgattgggacagaggagcac
gtcatggctaacttctcccccagcctggaagagtgccagaaagcccagatcttcactgag
atacaggctctgaaatacattgggaataaggtgcggagacagcgcatgtggggagggccc
aagaagaccaagatggaggaggccagagagctgttggcttccctcatcctcactcatgta
cctgtgaaggagtttaacttccgggccaagtgtatctacctagcggtgatggtgcgcagg
gtgatcctagcccaaggagagaacaaggtggatgaccgagactactatggcaacaagcgc
ctggagttggctggacagctgctgtctctgctgtttgaggatctctttaagaagttcaac
tccgagctgaagaagatctcagaccagatcatccccaagcagcgggcggcacagtttgac
attgtcaaacacatgcgccaggaccagatcaccaacggcatggtcaacgccatctccacc
ggtaactggtccctgaagaggtttaagatggaccgtcagggtgtgacccaggtgctgtcc
cgtctctccttcatctctgctctgggcatgatgaccaggatctcctcccagtttgagaag
accaggaaggtcagcggaccccgctctctgcagccctcccaatggggcatgctgtgcccc
tccgacacccctgagggagaggcctgtggtctggtgaagaacctggccctgatgacccac
atcaccacagacatggaggacggccccatcgtcaagctggccttcaacctgggagtggag
gatgtcaacctgctgtgtggagaggagctctcctacccaagtgtcttcctggtcttcctc
aatggtaacatcctgggggtgatccgggaccaccaaaggctggtgtacaccttcagactg
atgcgacgggctggattcatcaacgagtttgtgtccatctccaccaacctaaccgaccgc
tgtgtctacgtctcctcagatggaggacgcctctgtagaccgtatatcattgtgaagaaa
ggacagccaatggttaagaacaaacacatcgaggagttgacccagggatacagaaccttt
gaggatttcctccatgagagcctggtggagtacctggacgtgaacgaggagaatgactgt
cagatcgccctctatgagcacatgattaataaggatactacacacttggagattgagccc
ttcacactactaggggtctgtgctggtctgatcccctaccctcatcacaatcagtccccc
aggaacacataccagtgtgctatgggcaagcaggccatgggtacgattggctataaccag
aggaaccgtatagacactctgatgtacctgctgggctaccctcagaagcccatggtcaag
actagaaccatagagctgatagactttgagaaactgcctgcgggccagaacgccacagtg
gctgtgatgagctacagcggctacgacatagaggacgctctgatcctcaacaaggcctct
ctagacagaggatttggaagatgcctggtctacaagaacgctaagtgcacgttgaggcgc
tacaccaaccagacctttgacaaggtgatgggtcccatgctggatgcggccacacgcaag
cccatctggaggcacagtatcctggatgctgacggcatctgctgccctggtgagaaggtg
gagaataagcaggtgctggtgaacaaatccatgcccactgtcacccagacaccactggag
ggcagtgcccagccaggacagccccagtacagagatgtgcccgttagttacaagggctcc
acagactcctacatcgagaaggtgatgatctcctccaacgcagacgatgctttcctcatc
aagatcctgctgagacagaccaggagaccagagataggagacaagttcagcagtcggcac
ggacagaaaggtgtatgtggccttatcgttcctcaggaggacatgcccttctgtgactcg
ggcatctgccctgatatcatcatgaacccgcacggctacccctccagaatgacggtgggg
aagctgattgagctgctggctggtaaagcgggggtgatggacgggaggttccactacggc
acggccttcgggggcagcaaggtaaaggacgtgtgcgaggacctgatccgctatgggtac
aactaccagggcaaggattacgtcacctcgggcatcactggagagccaattgaggcctat
atctactttggacctgtgtattatcagaaactaaagcacatggtgctggacaagatgcac
gccagagcccgcggcccccgagctgttctcaccagacagcccacggaggggcgctctaga
gacggaggcctacgtctgggggagatggaacgtgactgtctgattggctacggggccagc
atgttgctgctggagcgcctcatgatctccagtgacgccttcgaggtggacgtgtgcggt
cagtgtggcctgctgggatactccgggtggtgccactactgtaagtcctcctgtcacgtg
tcctcgttacggataccctacgcctgcaaactgctcttccaggagctgcagtccatgaac
atcattccccgcctcaaactggcacgctacaacgagtaa
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