Oncorhynchus nerka (sockeye salmon): 115134151
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Entry
115134151 CDS
T07952
Symbol
rag1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
115134151 (rag1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115134151 (rag1)
Enzymes [BR:
one01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115134151 (rag1)
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
115134151 (rag1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAG1
RAG1_imp_bd
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
zf-RING_10
TRAF3_RING
zf-RING_UBOX
zf-C3HC4_4
zf-RING_2
zf-RAG1
zf-RING_6
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
115134151
NCBI-ProteinID:
XP_029523693
LinkDB
All DBs
Position
LG9a:13871609..13878972
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AA seq
1078 aa
AA seq
DB search
MEEGTLETYAPRCSMPAELHHPYSKFSDWKFKLFRVRSMERAPLPGEMQLERGALSEVVA
SAPLGETVGDVVDLPGSVMKLCLGGKSKENVEGPGKRVDLKLQEMDTHMNHLRCLCRLCG
GALRKAKGPEHEVQGLLDEDSRSALRRMGCKATSWPEVILKVFKVDVAGDMEVVHPPFFC
QRCWTLAMRGGGFCSFSRTHVPGWRPHTTLCLLCHPKKPSLQRRGRKRRKPTRGAQRLAK
RTKWDIQDNAAIVGEKRAWRTVINPHQGSGLRPWVRSSVQRAQWVKSITLCQKEHLSARL
LSEDLPVDFLSSVTCQVCDHLLSEPVQSPCRHLFCRSCIAKYIYSLGPHCPTCTLPCGPA
DLTAPAKGFLGVLHSLLLLCPRERCGEQVRLDSFRAHCLGHHLEEVDGDHKSAENSLDNF
LPVNKGGRPRQHLLSLTRRAQKHRLRDLKTQVKVFAEKEEGGDTKSVCLTLFLLALRAGN
EHRQADELEAMMQGRGFGLHPAVCLAIRVNTFLSCSQYHKMYRTVKATSGRQIFQPLHTL
RAAEKELLPGYHPFEWQPALKSVSTSCHVGIIDGLSGWIASVDDSPADTVTRRFRYDVAL
VSALKDLEEDIMEGLRERGLEDSACTSGFSVMIKESCDGMGDVSEKHGGGPAVPEKAVRF
SFTIMSVSIQAEGEDEAITIFREPKPNSEMSCKPLCLMFVDESDHETLTGVLGPVVAERN
AMKHSRLILSVGGLSRSFRFHFRGTGYDEKMVREMEGLEASGSTYICTLCDSTRAEASQN
MTLHSVTRSHDENLERYELWRTNPHSESAEELRDRVKGVSAKPFMETQPTLDALHCDIGN
ATEFYKIFQDEIGEVYHKANPSREQRRSWRAALDKQLRKKMKLKPVMRMNGNYARKLMTR
EAVEAVCELVCSEERQEALRELMGLYIQMKPVWRSTCPAKECPDQLCRYSFNSQRFAELL
STVFKYRYDGKITNYLHKTLAHVPEIVERDGSIGAWASEGNESGNKLFRRFRKMNARQSK
TFELEDVLKHHWLYTSKYLQKFMEAHKDSAKALQATIDTVGSQETQEDADMSLDVPDF
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atggaggagggtaccctggagacatatgccccccggtgctccatgccggccgagctccat
cacccctactccaagttctcagactggaagttcaagctgttccgggtcaggtccatggag
agggccccgctgcccggggagatgcagctagagagaggggccttgtctgaggttgtggcc
tctgcacccctgggggaaactgtgggggatgtggtggacctcccagggagtgtgatgaag
ctttgcctggggggtaagagcaaggagaacgtagagggcccgggaaagagagtggacctg
aaactccaggagatggacacacacatgaaccacctcaggtgtctgtgccgtctctgtggc
ggggccctgaggaaagccaaaggtccagagcatgaagtccaggggcttctggacgaggat
agcaggagtgccctgcgtaggatgggctgcaaggccaccagctggccagaggtcatcctc
aaggtcttcaaagtggacgtggcgggggacatggaggtcgtccatccgccattcttctgc
cagcgctgctggacattggccatgcgaggagggggcttctgcagcttctccaggacccat
gtccctgggtggagaccccacaccaccctctgcctcctctgccaccccaagaaaccctca
ctacagaggagagggaggaagaggaggaagcccactcgtggagcccaacgcctggccaag
aggaccaagtgggacatccaggataacgctgctattgttggtgagaagagagcctggaga
acagtgataaatcctcaccagggatctggacttagaccctgggtgagatccagcgtccag
agagctcagtgggtgaagagcatcaccctctgccagaaagagcaccttagtgccagattg
ctgtccgaggacctccctgtggacttcctgagctcagtcacctgtcaggtgtgtgaccac
ttgttgtctgagcccgtccagtccccctgcagacacctcttctgccgcagctgcatcgct
aaatatatttactctctgggcccccactgcccgacttgcaccctgccctgtggccctgcc
gaccttactgccccagctaagggcttcctgggggtcctgcactccctgctgctgctttgc
cccagagagcgctgtggggagcaggttcggctggactccttcagagcccactgcttgggt
caccatctggaggaagtggatggggaccacaagtcagcggaaaatagcctggacaacttc
ctgcctgtcaacaaagggggaaggccccgacagcatctcttgtctctgacaaggcgtgcc
cagaagcaccggctgagggacctgaagacccaggtgaaggtgtttgcagagaaggaagaa
ggtggagacaccaagtcggtgtgcctgaccctgttcctgctagctttgagggctggaaac
gaacaccggcaggcagacgaactggaggccatgatgcaaggtaggggctttggcctgcat
cctgctgtgtgtctggccatccgggtcaacacgttcctgagctgcagccagtaccacaag
atgtaccgcaccgtcaaggccaccagtgggcgccagatcttccagcccctgcacacctta
cgcgctgcagagaaggagctcctcccaggctaccacccctttgagtggcagccggccctc
aagagtgtgtccacatcctgccatgtggggatcattgacgggctatcagggtggatcgct
tcggtggacgactccccagcagatacagtcacgcgacggtttcgctacgacgtggccctg
gtgtcagccctgaaggacctggaggaggacatcatggaggggctgagagaacgaggcctg
gaggacagtgcttgcacctcgggcttcagcgttatgatcaaggagtcctgcgacggtatg
ggggacgtcagtgagaagcatggcggagggccggccgtcccggaaaaggctgtgcgtttc
tccttcaccatcatgtccgtctctattcaagctgagggagaagatgaggcgatcaccatt
ttccgggagcccaagcccaactcagagatgtcctgcaagccgctatgcctgatgtttgtg
gacgagtcggaccacgagactctcacaggcgtcctggggcctgtggtggccgagaggaac
gctatgaagcacagccgtctcatcctgtctgtgggtggcctttctcgctccttccgcttc
cacttccggggcacgggctatgatgagaagatggtgcgagagatggagggtttggaggcc
tctggctccacttacatctgcacgttgtgtgactccactcgggcagaggcctcccaaaac
atgactctccactctgtcacccgcagccatgacgagaacctggagcgctatgaactttgg
aggaccaaccctcattctgagtcagctgaagagctgcgagaccgagtcaaaggcgtctct
gccaagcccttcatggagacccagcccacactggacgccctgcactgtgatatcggcaat
gccactgagttctacaagatcttccaggatgagataggggaggtctatcacaaggcaaac
cccagccgggagcagcgtcggagctggcgggccgccctggacaagcagctgaggaagaag
atgaagctgaagcctgtgatgaggatgaatgggaactatgcacggaagctgatgacccgg
gaggcagtggaggcagtgtgtgagctggtgtgctcagaggagcgtcaggaagccctgcgg
gagctgatggggctctacatccagatgaagcctgtgtggcgctccacctgcccggccaag
gagtgcccagaccagctctgccggtatagcttcaactcccaacgcttcgcagagctgctc
tccaccgtcttcaagtacaggtatgacggaaagatcaccaactacctgcacaagaccttg
gcccatgtgccagagattgtggagagggatggctccatcggggcctgggccagcgagggg
aatgagtctgggaacaagctgttcagacggttcaggaagatgaatgcccgccagtccaag
acctttgagctggaggatgtgctgaagcaccactggctctacacatccaagtacctgcag
aagttcatggaagctcacaaggactctgccaaagctctgcaggccaccattgacactgtg
gggagtcaggagacacaggaggatgctgacatgtcactggatgtcccagacttttga
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integrated database retrieval system
