KEGG   Oncorhynchus nerka (sockeye salmon): 115134221
Entry
115134221         CDS       T07952                                 
Name
(RefSeq) RNA polymerase II elongation factor ELL2-like isoform X1
  KO
K15183  RNA polymerase II elongation factor ELL
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    115134221
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:one01009]
    115134221
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:one03021]
    115134221
Protein phosphatases and associated proteins [BR:one01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     115134221
Transcription machinery [BR:one03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     115134221
    Little elongation complex (LEC)
     115134221
SSDB
Motif
Pfam: ELL Occludin_ELL DUF4351 UBR1-like_wing
Other DBs
NCBI-GeneID: 115134221
NCBI-ProteinID: XP_029523831
LinkDB
Position
LG9a:complement(19561511..19601540)
AA seq 621 aa
MAALRQEHRYGLSCAKINKNVQNKTLYHVKLTDTAIRTLEAYQNLKGSLPNQPAICFKGS
QGYIKIPAPSPDASDALRVFSFYLSSDSKDKPQASFDCTHQYVSREGREHLEGQGSIQDK
ITVCATDDSYQMTRERMSQVEKDIMSRSAIEIKPGSTRGKCVKIQRKQGLSSSMDSSSNK
HSPSNKRSGAPSPVALRPLRDRIIHVLALKAYRKPELLLWLERERASPKDKADLGAVLDD
VAKLNPKDHSFTLKDEFYSHVQKDWPGYLEEEKQLIHRLLARKLQPLSSSSQLKSFQSNH
SFHKTPGDSPSQLSPVKTPSVKRPFPSELSDCQTPKKQRLLDHSLPLQSLSNGHLGPIGA
CSSSGPGNTSVQTKTEFERTNNHSQGSPNGLYTRHKLDGSSSIPKLERTEPVPAVPSPKA
PQTEPSICTDQQLANGQHKKKKSKKHKDKEREHLKQDWIENSPDLKQNQEHFNDHEGAKT
PVTRTSPEELPDYFIKYNIITASEQRKQYKEDFCAEYDEYRALHHRIGTITEMFVQLGSK
INTLSPGTQEYKLMEDQILQKYRKYKKKFPGYREEKKRFYSRQTRSLYLAKGKCNIYIYL
QLSVGDALSPTFPLEKYYKMY
NT seq 1866 nt   +upstreamnt  +downstreamnt
atggcagcgctgagacaggagcatcggtatgggctctcctgtgcaaaaatcaacaaaaac
gttcaaaataaaactctgtatcacgtcaagctaactgataccgccattcgaacgcttgaa
gcctaccaaaatcttaagggatccttaccaaatcagccagcaatttgcttcaaggggagc
caggggtacatcaagatccccgccccgtccccagatgcctcggacgcactacgggtcttc
tccttctacctgtccagtgatagcaaggacaaacctcaggccagcttcgactgcacccac
cagtatgtctcaagggagggcagggagcacctggagggccagggcagtattcaggacaag
atcactgtgtgtgccactgatgactcataccagatgacccgggagcgcatgtctcaggtg
gagaaggacatcatgagcaggtcggccatcgagatcaagccaggctccactcgtggtaaa
tgtgtgaagatccagaggaagcagggcctgtcgtcaagcatggacagcagcagcaacaag
cactcccccagcaacaagaggagcggggcccccagcccagtggccctccggcccctaaga
gaccgcatcatccacgtcttggccttgaaggcctacaggaagcctgagctgctgctgtgg
ctggagagggagagggccagtcctaaggacaaggctgacctgggagcagtactggacgat
gttgctaaactgaatcccaaagaccacagctttacactgaaggatgagttctacagtcat
gtccagaaggattggcccggttacctagaggaagagaagcagctcatccataggctcctg
gccaggaaactgcagccactgagcagcagtagccagttgaagagtttccagtcaaaccat
tcattccacaaaacccctggggattctccgtcacaactcagcccggtcaaaactccctct
gtgaaacgcccatttccctctgagctatctgattgtcagacccccaagaagcaaagacta
ttagaccacagtttacccctgcagtccctttccaatggacaccttggtcccattggagcc
tgtagctcatctggtccaggaaacaccagtgtacagaccaaaacagagtttgagagaacc
aacaatcacagccagggaagccctaatggtctctacacacggcacaaactggatggttcc
tccagcattcccaagctggagaggaccgagccggtcccagccgtaccaagccccaaggcc
ccacaaactgagccctccatctgcactgaccagcagctagccaacggccagcacaaaaag
aagaagtccaagaagcacaaagacaaggaacgggagcacttaaaacaagactggatagag
aacagtcccgacctgaagcagaaccaggaacatttcaatgaccatgagggggctaaaaca
cctgtcactcgtacgtcaccggaagagctgcccgactatttcataaagtacaacatcatc
acagcctcagagcaacggaaacagtacaaggaggatttctgtgcggagtatgatgagtac
agggccctgcatcaccggatcggtacaatcacagagatgtttgttcagctgggctcaaag
atcaacactctctcccccggtacacaggaatacaagctcatggaggaccaaatactgcag
aaatacagaaaatataagaagaagtttcctggttaccgggaagagaagaagcgattctat
tcaagacagacaagaagcctctacttggcgaaaggtaaatgtaatatatatatatatttg
caattgtctgtgggggatgctttatcaccaacttttcctctagaaaaatactacaaaatg
tattaa

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