Oncorhynchus nerka (sockeye salmon): 115134279
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Entry
115134279 CDS
T07952
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115134279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115134279
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115134279
mRNA degradation factors
5'-3' decay
Decapping complex
115134279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_EDC4L
Pdc1_Ge1
WDR55
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
115134279
NCBI-ProteinID:
XP_029523940
LinkDB
All DBs
Position
LG9a:complement(23476517..23512943)
Genome browser
AA seq
1427 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNSVDASPSENQSRTSFNGELNGLLGADLIGAGDR
STMAESTGPNSENMNTQECQIICLSGDDGSTCIPITSNNVEIVASRDSSIDSKARGSNKV
KIQPVAKYDWEHKYYYGNLIAVSNAYLAYAIRGANNQAMIRVLSLGSAERTLLKGFTGAV
TDLAFAHLDSTLLGCVDEAGNLVIWQLTCHSSKILDQVIVHVRRPEDTPLNSNRRLIWCP
FILEDNEENPEDASQTLALLHEDRAEVWDLEILRSNNGTWPVDATDLKDGVITIKGHTDR
ISEGALSPDGTVLATASHDGYVKFWQIYIEGQDQPSPLPGFFHRCLHEWQPHNGNPLSCL
LFCDNHKKQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPCLKA
SLDLSAECLILSDVQRKVLYVMELLQDQEKGRASFTAVSEFLLTHPVLSFGVQDVSHSRL
CHTEVLPPDEESESMTADGNQGTMESKAGIQIKLYCVHTKSLQDVQIWFQPNLGSGSSLF
LPHSNSNNGFGELGFSDHLTDMSVEGLSSDKESGCGSENDLCKIPALADFLSPSGTAAMP
KLMTPDAFMTPSASVPASPGSSASSLTIVTAMSSNSDSGASDGNVCRGGEELTQSPKMSV
ESNSILIAGLGDNMPIYHLPQETTPHTLMFPLTYPLRPLQGLPSPNPPLSLDPQVIEPML
IQQASPTRARSPDVISSASTAMSQDIPEIASETLQRGLGGMSGAESRETLPALHTDSMAS
AASALHHLSPRNRNSSDHGHLPLELGAVVGAVEAEQRLSNTPSLLENALSQENAAAAASC
SDNNVSHPWPAAPDITRETRNSLRDNGLGDCSREEIKDRHMSSPYHRRTYHLTQNDSQDA
SAEQSDHDDEVASLESSSGNCGARSSQRLPVKEWKSSPRGSPKLKRKSKKDDGDASHASQ
SRQPEQHHQQMNPEVLEELLILLRNQQREIAELHQSQLELLQRVTGHMDAVQSSVIAHVE
HVMVSQQEHEQRRMERILAEGHTRNQQLQEHLSQQLGQTLSNTLCNRLDKTLREEMKKTV
PPTITKSLEPVTAQMSNTIAAKLTAVEAALKENVSKVVKSKNTTDAIGRAAAEAMQGPIQ
AAYKDAFQGIVLPVFERGCQSMFQQINESFKQGTHEYIQQLETHVKNKKQHEQEARDPMI
GQLQQMIDTFQNSTDQLATTITASVRSEVQHQLHMTVGNLQDSILTQVQRIVKGEVSMAM
KEQQAAVNSSIMQAMRSAAGTPVPTAHLDYQAQQASILQLLQQGQLNQAFQQALSASDLN
LVLYVCETIDSQQVFGQHPCPLIQPVLLSLIQQLSTNLATRSELKISYLEDAVMNLDHGD
PVTRDHMSAVLSQVRQKLFQFLQSDPHSPLSKRARRLVMMLQGLVNH
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaattcaaacatagatatagagggtgcaacccagcatcttcgtgatatatta
aagctggaccgacctgggaacagcgttgatgcttctccaagtgagaaccaaagcagaaca
tctttcaatggtgaattgaatggacttctgggagcagaccttataggagcaggcgacagg
tcaaccatggctgaatccacaggccctaattcagagaacatgaacacccaagagtgtcag
atcatctgcctctctggggatgatggctccacttgcattcccatcacatctaacaatgtt
gaaattgtggccagtcgagactcaagcattgacagcaaggcacgtggcagcaacaaggta
aaaatccagcctgtcgccaagtacgactgggagcacaagtattactacggcaacctcatt
gcggtctctaacgcatacctggcatatgccatccgaggagcaaacaaccaggccatgatc
cgtgtgttgagcttgggctcggcagagcgcaccctgctgaagggcttcactggtgcagtc
acagacctggccttcgcacacctggattccaccctgctgggatgtgttgacgaggccggt
aacctggtcatctggcagctcacctgccatagcagcaagatcctcgatcaagtcattgtc
cacgtccggaggcctgaggacacacctctgaactccaataggaggttgatctggtgtccc
ttcatcctagaggacaatgaagagaaccctgaggatgccagccagaccctggccctactg
catgaagacagagctgaagtgtgggatctggagatcctccgcagcaacaatggcacctgg
ccagtagatgccactgacctaaaggacggagttataaccataaaaggacatacagatcgc
atcagtgaaggtgccctgtctccggatggcacagtcttggccacagccagtcatgatgga
tatgtaaagttctggcaaatctacattgaaggacaggaccagccaagtcctctccccggc
ttcttccacagatgtctacacgagtggcagccccacaacgggaaccccctttcctgcctg
ctgttctgtgacaaccacaagaaacaggacccagatgttccattctggcgctttctgatt
actggagctgatcagaaccaggagttgaagatgtggtgcacagtgtcatggacctgcctg
cagaccatcaggttctctccagacccgttcaactcctcagtcctgccctgtctgaaggcc
agtctggacctgtctgcagaatgcctcatcctcagtgacgtacagagaaaggtgttgtat
gtgatggagttgttgcaggaccaggaaaaaggcagagccagcttcacagccgtgtcagag
tttctgctcacacaccctgtgcttagcttcggtgttcaggatgtcagccacagccgcctg
tgccacacggaggtcctcccgccagacgaggagagcgagagtatgactgcagatggcaac
cagggcacaatggaatccaaagctgggatccaaatcaagctatattgtgttcacacaaag
tcccttcaagatgtgcagatctggttccagccaaaccttggatctggctcatccttgttc
ctgcctcactcgaactcaaataatggctttggtgagttaggtttttcagatcacttgaca
gacatgagtgtggaaggtttgagctctgataaggaatctggatgcggctccgaaaatgat
ctctgcaagattcccgctcttgctgacttcctgtccccctctggcactgctgctatgccc
aagctcatgacccctgacgccttcatgacccccagtgcttcggtcccagcctccccaggc
agcagtgccagcagcctgaccatagtgacagccatgagcagcaactctgacagtggcgcc
agtgatggtaatgtctgcaggggaggagaggagctcacccagagccctaagatgtctgtg
gagagcaactccatcctcatcgcaggcttaggggacaacatgccgatttaccatcttcca
caagagaccactcctcatacgctcatgttccccctcacctaccccctccgccctctacag
gggcttccctctccaaacccgcccctctcgctggacccgcaggtcattgagcctatgctg
attcagcaggcctctcctacccgggcccgctctccggacgtcatctcgtctgcctccacg
gccatgtctcaggacatacctgagatcgcctctgagacgctgcagcgaggcctggggggg
atgtctggagctgaatctcgagaaactctcccagccctccacacagacagtatggcttct
gcagcctcagctcttcaccacctctctccacgaaaccggaacagctctgaccatggccat
ctgcccctggagctgggtgctgtagtaggtgcagtggaggcggaacagaggctcagtaac
accccctcactactggagaacgctctgtcacaggagaatgctgctgccgctgcctcctgc
tcagacaacaatgtgagccacccgtggcctgcagctcctgacatcacacgggaaacacga
aacagcctgcgagacaatggcctgggagactgttcgagggaggaaattaaggacagacac
atgtcctctccataccacagacgcacctaccacttaacccagaatgacagtcaggacgcc
agtgcagaacagagtgaccatgacgatgaggtggccagtctagagtcgtcttcagggaac
tgtggagccaggtcgtctcaaagactgccagtgaaggagtggaagagttctcccagaggc
tcccctaaacttaagaggaagagtaaaaaagatgacggggatgcatctcatgcctctcag
tccaggcagcctgagcagcatcatcagcagatgaacccagaggtgctggaagaactcctg
attttgctccgtaaccagcagagggagatagcggagctccatcagagtcagctggagctg
cttcagagagtgacgggccacatggacgccgtgcagagctctgtcatagcccacgtagag
cacgtcatggtcagccagcaggagcacgaacagaggagaatggagagaatcctagcagag
ggacacacccgtaaccagcagctccaggagcatctctcgcagcagctaggtcaaactctc
agtaacaccctttgtaatcggctggacaagactctccgagaggagatgaagaagactgtt
cctcccactatcaccaagagcctggagcctgtcactgcccaaatgagtaacaccattgct
gctaagctgacggctgtggaggcagcactgaaggagaacgttagcaaagtcgtgaagtca
aagaacaccacagatgctattggccgagcagctgccgaggcaatgcaggggcctatccag
gctgcctacaaggatgctttccaaggcattgtgctgcctgtgtttgagagaggctgccag
tctatgttccagcagatcaatgagagcttcaagcagggcacccatgagtatatccagcaa
ctggagacccatgtgaagaacaagaagcagcatgagcaggaagcacgggatcctatgatt
ggccagctgcaacagatgattgacacgttccagaactcaacggatcagctggccaccacc
atcacagcaagtgtccgctctgaggtccagcatcagctccacatgacggtgggaaatttg
caggactcgatcctgacccaggtgcagcgcattgtgaagggtgaggtgagtatggccatg
aaggagcagcaggcagctgtgaactccagcatcatgcaggccatgcgctctgctgcaggc
acgcctgtccccaccgcacacctggactaccaggcccagcaagccagcatcctgcagctg
ctgcagcagggacagctcaaccaggccttccaacaggccctgtcagcctctgacctgaac
ctggttctgtatgtgtgcgagaccatcgactcccagcaggtgtttggccagcatccctgc
cccctcatccagccagtgctgctgtccctaatacagcagctgtccactaacctggccaca
cgctctgagctcaagatcagttacttggaggatgctgtgatgaacctggaccatggtgat
ccggtgacgagggaccacatgagtgcggtgctgtcccaggtccgacagaagctgttccag
ttcctgcagtcagatccacacagtcctctcagcaagagagcccggcgcctggtgatgatg
cttcagggcctggtcaatcactag
DBGET
integrated database retrieval system
