Oncorhynchus nerka (sockeye salmon): 115134288
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Entry
115134288 CDS
T07952
Name
(RefSeq) transcriptional repressor CTCF-like isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115134288
03036 Chromosome and associated proteins [BR:
one03036
]
115134288
Transcription factors [BR:
one03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
115134288
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
115134288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_7th_ZNF462
zf-C2H2_REST
zf-met
Zf-C2H2_ZNF451
zf-C2HE
zf-C2H2_6
Zf-C2H2_ZNF451_C
zf-C2H2_15
Motif
Other DBs
NCBI-GeneID:
115134288
NCBI-ProteinID:
XP_029523963
LinkDB
All DBs
Position
LG9a:23848577..23864796
Genome browser
AA seq
800 aa
AA seq
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MKYSFLVQLLPMDGGPTDVVVEAKDFTYEGEEVVADLLQQAAEGVMDQQPEGVAGLDTQQ
LVEGVNVEMMVMDSLDPALLQLKTEVMDAPVATAHEATVTTVDETQIITLQVVNMDEQQL
GGLGELQLVQVPVSAVPVTQATVEALQGTFVDTTAMPKDGNPVICHTLPLPEGFQVVKVG
ANGEVETVEQDELQHQEEQQVQPEEEEEELHCEPQPEEPQWAKDPDYQPPAKKTIKKAKK
STLRYNTEGDKDNMDVSVYDFEEEQQEGMLSEVNAEKVVGNMKPPKPTKIKKKGVKKTFQ
CELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCQDC
DMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYA
SRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIA
RKSDLGVHLRKQHSFIEQGRKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYCCRQE
RHMLMHRRTHTGEKPYACSQCEKTFRQKQLLDMHFRRYHDPNFVPTAFVCTKCGKAFTRR
NTMARHAENCNGDPSEGENGSPPKRGRGGRKRKMRSRKDEDDDDDDSEDNADPELDDIDE
EDEEAEAELLEEEEEEEEMMELEQAPPTKPIPAPVEPPVKRKRGRPPKNIPKPSPPAKAS
KVAPKGKAASAAAVIQVEDENTGAIENIIVKKEQEAEQAAPEVVVEQPEEAGVETVELPV
ADAAPNGDLTPEMILSMMDR
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgaagtattcctttctagtgcagttgttaccgatggacggaggaccaacagatgttgtg
gttgaggccaaggacttcacctatgagggggaggaggtggtggcagacctgctccagcaa
gcagcagaaggggtgatggaccagcagccagagggagttgctggtctggatacccagcag
ctggtggagggagtcaatgtggagatgatggtaatggactccctggacccggccctgctg
cagttgaagactgaggtgatggatgcccctgtggctacagcccacgaggccacggtcacc
acggtggatgagacccagatcatcactctgcaggttgtcaacatggatgagcagcagctg
ggaggcctcggggagctacagctggtccaggtccctgtctctgctgtccctgtcacccag
gccactgtagaggcgctacagggtaccttcgtggacaccacggccatgcccaaagacgga
aaccctgttatctgccacaccctgcccctgccagagggattccaggtggtgaaggtgggt
gcgaatggtgaggtggaaacagtggagcaggatgagcttcagcaccaagaggaacagcag
gtccagcctgaggaggaggaggaggagctgcactgtgagccccagcctgaagaaccacaa
tgggccaaggaccccgactaccagcccccagccaagaagaccatcaagaaggcaaaaaag
agcacgctgcgctacaacacagagggggataaagacaacatggacgtgtctgtgtatgat
tttgaggaggagcagcaggaagggatgctctctgaggtcaacgcagagaaggtggtgggc
aacatgaaaccccccaaacccaccaaaattaagaagaagggtgtgaagaaaacattccag
tgtgagctgtgtagctacacctgtccccgccgctccaacttggaccgacacatgaaaagc
cacacagatgagaggccccacaagtgccatctgtgtggaagggccttcaggactgttacc
ctgctaaggaaccacctcaacacacacacaggtaccagaccacacaagtgtcaagattgt
gacatggccttcgtgaccagtggagagttggtccgacatcgtcgctacaagcacactcat
gagaaacccttcaagtgctccatgtgtgactatgccagtgtagaggtgagcaagctaaag
cggcacatccgttcccacactggggagcgtcctttccagtgcagtctgtgcagctacgcc
agcagagacacctacaagctgaagagacacatgaggacacactcgggagagaagccgtat
gagtgctatatttgccacgcccgtttcacccagagtggaaccatgaagatgcacatcctg
cagaagcacacagagaacgtggccaagttccactgcccccactgtgacacagtcatcgcc
cgaaagagtgacctgggcgtccacctgcgaaaacagcactcattcattgagcagggcagg
aaatgtcgttactgtgatgctgtgttccacgagcgctacgcactcatccagcaccagaag
tcccacaagaacgagaaacgcttcaagtgtgaccagtgtgattactgctgcagacaggag
cgccacatgctgatgcacaggcgcacccacacaggagagaagccttacgcctgtagccag
tgtgagaagaccttccgtcagaagcagctcctggacatgcacttccggcgttaccatgac
cccaactttgtgcccaccgcctttgtgtgcaccaagtgtggcaaggccttcacccgcagg
aacaccatggccagacatgcagaaaactgtaacggggatcctagtgaaggagagaacgga
tccccacccaagagaggacgaggtgggaggaagaggaagatgcgctcaaggaaggatgaa
gacgatgatgatgacgacagtgaggacaatgctgatcctgagctggatgacattgatgaa
gaggatgaggaggctgaggcagaactgctggaggaagaggaggaggaggaggagatgatg
gagttggagcaggctccacccaccaaacctattcctgcccctgtagagccacctgtcaag
aggaaacgcggcagacctcccaagaacatccccaaaccctcccctcccgccaaagccagc
aaggttgcccccaaaggcaaggctgcttcagctgcagccgtcatccaggtggaggatgag
aataccggcgccatagagaacatcatagtgaagaaggagcaagaggctgaacaggctgcc
ccagaggtggtggtggagcaaccagaggaggcaggggtggagacggtggagctgcctgta
gcagacgctgcccccaacggagacctcacccctgagatgatcctcagcatgatggaccgg
tga
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