Oncorhynchus nerka (sockeye salmon): 115134302
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Entry
115134302 CDS
T07952
Symbol
nlrc5
Name
(RefSeq) protein NLRC5
KO
K22615
NLR family CARD domain containing 5
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
one04054
]
115134302 (nlrc5)
Pattern recognition receptors [BR:
one04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
115134302 (nlrc5)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
Atypical_Card
AAA_30
AAA_22
TsaE
Motif
Other DBs
NCBI-GeneID:
115134302
NCBI-ProteinID:
XP_029523990
LinkDB
All DBs
Position
LG9a:24523116..24542626
Genome browser
AA seq
1856 aa
AA seq
DB search
MEAEEDVQSVLTQETHELADILGYQDDAVLSKLYKMMDSRARERLVRAASHRERILEMLG
YFSTADPAMCRQFLQMVCMHCDMPMRLESRLMSVTGSVTSDPWPTLAREALSICDPEEVI
ENNSHTLVDESIASQGWCVKRPRIDHVESYKAAVRRFLLQRWERVMQGVVKEVRLEEAWV
SLRHRTHVRPRDRADGALSPSELPQGDEEGTVEDRVTVHSLLGSEAQVTLLLGQAGSGKT
LLMHCLGQKWTQDASPSFHLLILLEFRQLNLVARPLSLKELLFRFFLPPEGGEEECTAVL
DFILENPEKICLIFDGYDEFHTKITHSGKLSSSFDPLCPLPMAELISGLCSRRILPGCTL
LITCRPRDVTDLESSVDCIGELLGFNQRSVKEYAEQYFQDKGLNLKEKAVSHLLANHHLL
TMCYLPALCHICCVCLDHIFSSGGSELLPQLPNTLTQVYLQILCAFLSRCPGSNTPLLQS
HRAEVTLLGRLAMRGLEGSKIVFLSEEVPPDLVDFATKAGLLSQVDLTHEDGSKGQGYTF
MHLTMQEFLAALHIMTSDDITEAQLRKKFNLKTRWTTKSNPKTVFTDSLHLYVCGLAAPA
CFSYLLQLVRGVGAVAWVKKRLSLVRKLLRSLAMSTNLTGPKVVELCHCVQETQDAQLAR
EMVGSRPCFELRNITLNPVDLDALAFVVSSAGVSIGLDFGACSMELECLDILPSCQHIDF
LIFRSRKYDDRFADKLSCILPRLPTLKRFEFICGNLTDVGAAKLARALESCPQITELNFS
DNSLTDRGVREITDIFPKLPSLASVSLGKNGCSLESIYILLEKITSSPSIQGLYAEGMKD
VSVLFVPSVDMKCSKDKTGLTVSLLNCSFTTDQMNRLCQLLARCPGLSVLDLSGGDIKAD
TLKALTDSLQELNISKQIVLNGIPISVDGLMVLTSFLSVCPDVVQVDISLQDPVRVSILF
AGGIEKQHPEMSKKLRLIGCALLPPHLDHLCENLTGCSALTLLDLSNNSLGNKGLKKLLD
LLPQLSNIQEINVSENAVSMEGVVLLADTLCSHRNMSEVNISHGGKKLFLKFHSSKRIQS
EALRTSPDMEQDKKLSLTHSDIQATDMTRLCRRLVQCPGLLKLDFSHGSLKDDAIENLLN
ILPKMTSLQLLNISHVQMSTDGVLLLVRSLIDCQRVRAVELRPQGEAFIKFVNVKAEQAT
CRLTQYTLSSGDVEKLSGILEQCPHLSDLDLSSNLLRDEGVKSFVDSLPRLRIASSVNLN
DNRLTQMGALYLVNTVTTCEKVAAVEVSLGTEERSLIRFEQESDCGKTLSLRECHFGADH
LQRLAEILTRCAAQLIKLRIRNSGLSVQVIEDLVKQLRCGHIQRYISIEEPWITAEAAVN
LLSCCLNLNPNIHTIGVNNSTVHITLEECQNPTATSGGTSTDMSGSLSTVTISLVDCAVQ
GHHLVSLQTVFQRCVLLQELDLSYNSIGRVGAEFICSVLPSLASLRKLSLETKETSEDVV
LLLAEGLLQAKSIESLNLSGHMITDREAVALTRALQNLPHLRTINLSLCHGWTPAGALEL
VRGLGRCLSLEGISLDSVQLDEESTVCLAQGLHAMTSLKRLNLNNKVTMVTGSPWVGATL
VLLASLEGLRGMEELELEGMRISDNGVEELIKHLPTWTGLKKISLSGNCISDQAGERLVQ
ALTTCTALEELNLSRNNLSLACAAKMGQVLPTLTHFRVLDLSENEIGTKGSVSISKALIS
MKYLTKIHLTSIGTSELAGLADSLAHCVCAEDVSFAWNDCGDDVAVKLAEVLPQCQKLRR
LDLESNSISTIGADALARSLQSCPSVEVIRLWRNFISTSDAQKLRQREKRLNFSST
NT seq
5571 nt
NT seq
+upstream
nt +downstream
nt
atggaagcagaggaagatgtccagagtgtattaacacaggagacccatgagctggcagac
attctgggctatcaagatgatgcagttctctccaaactctataaaatgatggacagcaga
gcgcgggaacggctcgtgcgcgctgccagtcacagagaacgcatcctggagatgttgggt
tacttcagcacagcagaccctgctatgtgccgccaatttcttcaaatggtctgcatgcac
tgcgacatgccaatgcgcctggaatctcggctgatgtctgttaccggatctgtgactagt
gatccttggcctacactggcaagagaggccctatccatctgtgatccagaagaagtaatt
gaaaacaacagccataccctggttgatgagtctatagcatctcaaggttggtgtgtaaaa
cgcccacgaatagaccacgtagaaagctacaaggctgctgttaggagatttctactgcag
aggtgggagagggtgatgcagggtgtggtgaaggaggttcgtctggaagaggcctgggtc
agtctgcgccacagaacccatgttagacccagagacagggctgatggagctctgagcccc
tcagagcttccacagggggacgaggaggggactgtggaagacagggtgactgttcactcc
ctcttgggttcggaagcccaggtcacactgctgttaggccaggcagggtcagggaagaca
ctactgatgcactgccttggccagaaatggacacaggacgcctctccctcctttcaccta
ctgatcctgctagagttccgccagctcaacctcgtggctcggccgctctctctgaaggag
ctgctctttcgcttcttcctcccaccagagggtggggaggaggagtgtaccgctgtactt
gacttcatccttgaaaaccctgagaaaatatgcttgatctttgatggctacgatgagttt
cacactaaaataacccactcagggaaactgagcagctcatttgacccactgtgcccactc
cccatggcagagctgatctcaggcctgtgcagtcgcagaatcctcccaggatgcactctg
ttgattacctgtaggcctcgggatgtgacagacttggagagttctgtggactgcattggg
gagctgctaggtttcaaccagcgcagtgtgaaagaatatgctgaacagtacttccaggac
aagggtctgaatctgaaggagaaggcagtgagtcatctactggccaaccaccacctcctc
accatgtgttacctgccagccctctgccatatctgctgtgtgtgcctggaccacatattc
tccagtggtgggtctgagcttttaccccagcttccaaacaccctcacccaggtctacctc
cagatcctctgtgcctttctgagccgatgcccagggagcaacacacccctgttgcagagt
cacagggcagaggtcacactgctgggccgcctggccatgaggggcctggaggggagcaag
atcgtgttcttgtctgaagaggttccaccagacctggtggacttcgccactaaggctggt
ctcctctcacaggtggacctgacccatgaggatggatctaaaggccagggctacacattc
atgcacctcaccatgcaagagtttctggccgcgctacacatcatgaccagcgacgacatc
acagaggcccagctcaggaagaagttcaacctcaagacccgctggaccacgaaatcaaac
cccaagactgttttcactgactccctccatctgtatgtttgtgggcttgctgcaccagcc
tgcttctcttacctgcttcagcttgttcggggagtgggggctgtggcgtgggtgaagaaa
cgcctgtcactagttcgcaagttgctccgaagcctggcaatgagcaccaacctgactggg
cccaaggtggtggagctgtgccactgtgtccaggagacccaggatgcccaactggccagg
gagatggtggggtcgcgaccctgcttcgaactaaggaacatcacattgaaccctgttgat
ctggatgccctggcctttgtcgtctcgtctgctggagtgagtatcgggttggactttgga
gcctgttctatggagctggagtgtctcgatattctacccagctgccagcacatcgacttt
ctaatttttcgaagccgtaagtatgatgacagatttgcagataaactttcttgcatcctt
cccagactaccaaccctgaaaagatttgagtttatctgtggtaacctcactgatgtggga
gctgccaaacttgccagagccctggagagctgtccacagatcacagagctcaatttcagt
gacaacagcctgacagacagaggagtccgggagatcactgacatctttcccaagctgccc
agtctggcctctgtctcgttggggaagaatggctgctctctggagagtatctacatcctt
ctagagaagatcacttccagcccctccatccagggactctatgctgagggaatgaaggac
gtcagtgtcctatttgtcccaagcgtggacatgaaatgttctaaggataaaactggactg
actgtcagcctgttgaactgcagtttcactactgaccagatgaacagactgtgtcagttg
ctagcgagatgtcctggtctctctgtcctggatctctcaggaggtgacatcaaggctgat
accctcaaggccctgactgactctctacaggagctgaacatctccaaacagattgttctg
aatgggattcccatatctgttgatgggttgatggttctgaccagtttcctgtctgtatgt
cctgatgtggttcaagtggacatcagcctgcaggaccctgtgcgtgtgtctatacttttt
gctggggggatagagaaacaacatcctgagatgtctaagaaacttcgtctgattggctgt
gctcttcttccccctcacttggaccatctgtgtgagaatctgacgggctgctctgctctg
actctgctggatctgtccaacaattctctgggaaacaaaggtctaaagaagttgttagac
ctcttacctcagcttagcaacatccaggaaatcaatgtcagtgagaatgcagttagcatg
gaaggggtggtgctgctagctgacacgctctgctcacacaggaacatgagcgaagtgaat
atcagtcatggagggaagaagctgttcctgaaattccattccagtaaaagaatacaatca
gaagcactcaggacctcaccagatatggaacaggataagaaactcagtctaactcacagt
gatatccaggccactgacatgaccaggctgtgtagaagactggtacagtgtcccggccta
ctgaagctagatttctcccatggatccctcaaggacgatgccattgaaaatctattgaat
atcctgcctaagatgacatctcttcagctgctcaatataagccatgtccagatgtctacg
gacggagtgttgttattggtcagatctctgatagactgtcagcgtgtcagagctgtggaa
ctcaggccccaaggagaagcgttcatcaagtttgtcaacgtgaaagcagaacaagcaact
tgcagactcacccagtacacactgagcagtggggatgtggagaaactctctgggatcctg
gagcagtgtcctcatttgtctgacctggatttatccagtaacctcctgagagacgaggga
gtgaagagctttgtggattctctgccaaggctgcggattgccagctcagtgaatcttaat
gataacagactgacccagatgggggcgctctacctggtgaacacagtgacgacctgtgag
aaggtggctgcagttgaagtcagtttgggaactgaggagaggtcgctcattcgctttgaa
caggagagtgactgtggcaaaactctgagtctgagagagtgtcattttggggctgaccat
ctgcagagactagcagagattctgacacgctgtgctgctcagttgatcaagctgaggata
agaaacagcggactgagtgttcaagtgattgaagacttggtgaagcagctgaggtgtggt
cacatccaacgctatatcagtattgaggagccatggatcacagcagaagcagctgtaaac
ctgctctcctgctgcttgaacctgaaccccaacatacacaccatcggggtcaataattcc
actgtacatattactttggaagaatgccaaaatcccactgctaccagtggtggcacttct
acagacatgtctggctctctgtctaccgtgaccataagcctggtagactgtgcagtacaa
gggcaccacctagtgtctctgcagactgtgttccagaggtgtgttctgctacaggaacta
gatttgtcatacaacagcattggtagagtgggagcagagttcatctgctctgtcctacca
tccttagctagtctgaggaaactcagtctggaaacaaaagaaacctctgaagatgtggta
ttgctccttgccgaggggttgttgcaggctaaaagcattgagagcttgaatttgtctggt
catatgattactgacagagaagctgtagctctgaccagagcactccaaaaccttcctcat
ctcagaacaatcaatctgtctctctgccatggttggacaccagcaggggccttggagctg
gtgagagggctgggacggtgcctctctctggaagggatcagccttgactctgtacagctg
gatgaggagagcacagtgtgcctggcccaaggtctccatgctatgacctccttgaagagg
ctgaatctgaataataaagttaccatggtgactggatccccatgggtgggggccactctg
gtcctgctggcctctttggaggggctcagagggatggaggagctagagttagaggggatg
aggatttcagataatggagtggaggagcttatcaaacacctgcccacctggacaggcctg
aagaagatcagcctgtcagggaactgcatcagtgaccaagcaggagagaggctggtccag
gccctgacaacctgcacagcactggaggagctcaatctgtcaaggaataatctcagcctt
gcctgtgctgccaagatgggacaagttctgcccactctcactcacttcagggttctagat
ctctcagagaacgagattggtacaaaaggatctgtcagtatctccaaagccttgatctcc
atgaagtatttgacaaagatacacttgacctccatagggacttcagagcttgctggtctg
gctgacagcctggctcactgtgtctgtgcagaggatgtcagttttgcgtggaatgattgt
ggagatgatgtcgcagtgaagcttgccgaggttttaccacaatgccagaagctaaggaga
cttgatctagagtctaacagtatcagcactattggagcagatgcacttgccagaagctta
cagtcttgtccatcagttgaagtgatcagactgtggaggaattttatttctaccagtgat
gcccagaaactgagacagagggagaagaggctcaacttctcctccacatag
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