Oncorhynchus nerka (sockeye salmon): 115134330
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Entry
115134330 CDS
T07952
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
115134330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
one03009
]
115134330
Ribosome biogenesis [BR:
one03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
115134330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
WD40
WD40_Prp19
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_NUP159_NUP214
Beta-prop_HPS5
EIF3I
Beta-prop_TEP1_2nd
RMC1_N
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
DUF7165
PROPPIN
Lactonase
Beta-prop_DCAF12
CPSF_A
Kelch_KLHDC2_KLHL20_DRC7
Motif
Other DBs
NCBI-GeneID:
115134330
NCBI-ProteinID:
XP_029524031
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All DBs
Position
LG9a:complement(26551620..26558594)
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AA seq
686 aa
AA seq
DB search
MGEFKVHRVRFFDYMPTAIRAMAFNAHTERLALARMDGSVEIFNFTDHYFQEKVIPGKDS
RSIESLCWVGGRLFSAGLNGEIAEYDLENLRPKYSLEAYGGPIWTIISNTQGTQLAIGCE
DGTVKLFEVLEEHIQFERNLDRQKGRIISLSWHPSGTHIAAGMMDMIRVFDVPTGHAVQR
LLVDRGFGGSKSRETVVWSVAFLSDHTVVSGDSAGKVQVWDGHTGALVKTHLVTKWDVLA
LSVSKDESSVVAGTSEGTVIQFQFIAPTLHQQQDKEWVRTRTFKNHTHDVRALAEIETAI
VSGGMDTHLVVRPLLEKFDEKSHASGLRKIHFPHRNLVSCAKKAGLLLFQFPGQLELWRL
GDSDGHGKPGDHLPLKRKPEKLLLLKRKGEDHICCSALSSCGGWLAYSTVSCVRIYRLQM
DNNNISITKVSKLPKALRSAHQLCFSSDSSKMFAASSQSSVLIIALTQSECKYVHTLKPK
SGSRQPIHLMTTSVDGKWLAAANSDCEIHVYNLQKLKLHCIVPVYGSCPSAMGIHPITNN
MTVVHADQQLFEYSIVEKQYTDWSRKLQKQGLHSVWLDRDTPVTHVTFNPKNTNQVVLHD
MHMFCIIDQSLPLPDQKTQFYNQMTLRSLSEQERPSHLHAFKICKTFQDLLCVSLLDDQS
LVVVERPLLAITSQLPAPVRQKKFAT
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgggggagttcaaagtgcaccgggttcggtttttcgactacatgcccacagcgatcaga
gccatggcattcaatgcccacacagagagattagcccttgcacgaatggatgggagtgtc
gagattttcaacttcactgaccactatttccaggaaaaagttatcccagggaaagactcc
cgatccatcgagtctctgtgttgggttggaggacgccttttcagtgctggcctgaatgga
gagatcgcagaatatgacctggaaaacctaagacccaagtactccctggaggcgtatggg
ggccccatttggaccataatcagcaatactcaagggacacaattagcgattggatgtgaa
gatgggacagtgaagttgtttgaagtacttgaagagcacatacagtttgagcgtaatctg
gacagacagaaaggtcgcatcatatccctctcctggcacccctctggcacacacatcgct
gctggcatgatggacatgatccgtgtctttgatgttccaactggtcatgctgtacagagg
ctcctggtggaccggggctttggaggctctaagagtcgggagacagtagtctggagcgtg
gccttcctgtcagaccatactgtcgtcagcggggactctgctgggaaggtccaagtctgg
gatggacacaccggcgctcttgtcaaaacacacctggtgaccaagtgggatgtgctggca
ctgtctgtctctaaggacgagagcagtgtggtggcagggacgtcagaaggcactgtgatc
cagttccagttcattgctcctactctgcatcagcagcaggacaaggagtgggtcagaacc
aggaccttcaagaaccacacgcatgatgtcagagccctggctgagatcgagactgccatc
gtctctggaggcatggatacccaccttgtagtgagacccctcttggagaagtttgatgag
aagtcacacgcttcaggacttcggaagatccactttccccaccggaatctagtatcctgt
gcgaagaaggcaggactactgctcttccagttccctggtcagctggagctgtggagactg
ggagatagtgatggacatgggaagccaggagaccacttgcctctgaagaggaagccggag
aaactcctccttctgaagagaaagggtgaagatcatatctgctgcagtgccctgtcctcc
tgtggaggatggctagcttattccaccgtgtcctgcgtgcgtatctacaggctgcagatg
gacaataataacatcagtattaccaaggtatccaaactcccaaaggctctacgctctgca
caccagctctgcttctcctcggactcctccaagatgtttgctgcctccagccaatcatca
gtcctcattattgctcttacccagtctgagtgcaagtatgtgcacaccctcaagcccaag
tcagggtccaggcagcccattcacctaatgactaccagtgtagatgggaagtggctggcg
gccgcaaatagtgactgtgagatccacgtctacaatctacagaaactaaagctccattgt
atagtacctgtttatggttcctgtcccagtgccatggggatccaccccattaccaacaac
atgacagtggtgcacgctgaccaacagttatttgagtactccatagtggagaagcagtac
acagactggagccgaaagctgcagaagcaggggctccacagcgtgtggttggaccgggac
acacccgtcacccacgtgaccttcaacccgaaaaacacaaatcaagttgtcctgcacgac
atgcacatgttctgcataatcgaccaaagtctgcccctccctgaccagaagacccagttt
tacaatcagatgaccctcaggagcctatcagagcaggagaggcccagtcacctccatgct
ttcaaaatatgcaaaaccttccaggacctgctgtgtgtgagcctgttggatgaccagtct
ctggtggtggtggagcgccctctcctggccatcacatctcagctgcctgctccagtccga
cagaaaaagtttgcaacataa
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