Oncorhynchus nerka (sockeye salmon): 115134404
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Entry
115134404 CDS
T07952
Name
(RefSeq) low-density lipoprotein receptor-related protein 5-like
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04150
mTOR signaling pathway
one04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
115134404
04150 mTOR signaling pathway
115134404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115134404
Membrane trafficking [BR:
one04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
115134404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
DUF5050
Vgb_lyase
SGL
EGF_LRP2
EGF
cEGF
Insulin_TMD
Motif
Other DBs
NCBI-GeneID:
115134404
NCBI-ProteinID:
XP_029524194
LinkDB
All DBs
Position
LG9a:29306902..29361138
Genome browser
AA seq
1624 aa
AA seq
DB search
MELKPRPLAMDVLLVELLFYSSLLSLVRGSPLLLFANRRDVRLVEVGRPESAVVVSDLED
AAAVDFLYSEGLIFWTDVSEEAIKQTYYNRSTHSVKEAMGTGQTVVVSGLDSPDGLACDW
LGRKLYWTDSETNRIEVANLDGTSRKVLFWLDLDQPRAIALNPAHRYMYWTDWGEEPRIE
RAGMDGSNRKIIVEVDIYWPNGLTIDLDEQKLYWADAKLSFIHRANLDGSSRETVVEGTL
THPFALTLSEETLYWTDWQTRSIHACNKHTGDKRREILSGIYSPMDIQVLGPDRQPDIQT
PCSVDNGGCSHLCLLSPMQPFYSCACPTGVKLKEDGKTCRPGAEQVLLLARRTDLRRISL
DLPDFTDIVLQVDDIRHAIAIDYDPVDGYVYWTDDEVKAIRRSRIDGTEAQTLVTTEINH
PDGIAVDWVARNLYWTDTGTDRIEVTRLNGTSRRILISENLDEPRAIVLDPVNGYMYWTD
WGEKPKIERANLDGTERIVLLNTSLGWPNGLAIDYEAGKLYWGDAKTDKIEVIDVDGSNR
VTLLEDKLPHIFGFTLLGDYIYWTDWQRRSIERVHKTDAIREIIIDQLPDLMGLKATRVT
ETSGTNGCAEDNGGCSHLCFHRPQGLRCACPMGLELLSDMRMCVVPEAFLLFTNRADIRS
ISLGTNSNDVAIPLTGVKEASALDFDVSENRIYWTDVSTKTISRAFMNGSSVEHVIEFGL
DYPEGMAVDWMGRNVYWADTGTNRIEVARLDGQYRQVLVCKDLDNPRSLALDPANGYMYW
TEWGGKPRIARAHMDGSNIVTLVDKVGRANGLTIDYIDQRLYWTDLDTCMIESTNMQGLQ
REIVADDLLHPFGLTQYRDYIYWTDWKLRSIERADKRSGLNRTMVQGHLEYVMDILVFHS
SRQDGANDCSQNNGNCAHLCLASPAGAQCRCASHYTLDSNSRNCSSPSSFLLFSQKASIS
RMVLGEQSPDIILPIHVLRTVRAISYDPLDHLVYWVDGRQNIRRARDDGTQSSVVVSTTS
THQQQPDKQPHDLSLDPYSRTVYWTCEATNTINLQRLDGDAVGVVLRDEHDKPRAIVVNA
EKGYMYFTTMQDRSAKIEGASLDGTERESLFTTGLIRPVALALDNKLGKLFWVDADLKRI
ESSDLTGANRIVLQDSNILQPMGLTVLGEHLYWIDRQQQMIERVDKLTGEKRTRIQGRIS
YLTSIHAVEDMDPAEFASHPCSRDNGGCSHICIAKGDGTPRCSCPMHLVLLPNLLVCGEP
PTCSTEQFTCATGDIDCIPMAWRCDGFAECDDNSDEERCPVCSAFQFQCDKGQCVDAQLR
CNGEADCTDNSDEQDCDTICLPNQFRCNNNQCILKKQQCDSYSDCADNSDELFCEFLTPS
SNDIHSSHTSTIGPVIGIILSVFVMGGMYFLCQRVVCRRYKGPNGAFPHEYISGTPHVPL
NFIAPSSSQNGTFTGKEGISCGKSIMSSVSLMGSSSSGTPLYDRNHVTGASSSSSSSAKG
AFYPQMLNPPPSPATDRSLYNADVFYSSNSPSTTRSYRPYLMRGVAPPTTPCSTDVCDSD
YTTSRWKSNKYYMDLNSDSDPYPPPPTPRSQYLSAEESCPPSPSTERSYFHLCPPPPSPC
TDSS
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atggaattaaagccacgaccactagcaatggacgttctccttgtggaattactgttttat
agcagcttgctctctctggttcgtggatctcccttgctgctgtttgccaaccggcgggat
gtgaggctggtggaggtggggaggccggagtcggcggtggtggtcagtgatctggaggat
gctgctgccgtggacttcctctactctgaaggactcatcttctggaccgacgtcagcgag
gaggccatcaagcaaacctactacaatcggtccacccactctgtgaaagaggccatgggc
acagggcagactgttgtcgtgtcgggcctcgactcccccgacggactggcttgtgattgg
ttgggccgtaaactatactggactgactcggagaccaaccgcattgaagtggccaatctg
gatggcacctctcggaaagtgctcttctggttagacctggaccagccccgggccatcgcc
ctgaacccagcccaccgctatatgtactggacagactggggggaggagcctcgcatcgag
agggcggggatggacggcagcaacaggaagatcatcgtggaggtggacatctattggccg
aacggtctcaccattgacctggacgaacagaaactgtactgggccgacgccaagctgagc
ttcatccacagagctaacttggatggctcctcacgggagactgtggtggagggcaccctc
acccacccgtttgccctcaccctgtcagaggagactctgtactggacagactggcagacc
cgctccatccacgcctgcaacaaacacactggagacaagaggagggagatcctcagtgga
atctactcccccatggacatccaagtgctgggtccagatagacagccagacatccaaact
ccctgcagtgtggacaacggaggctgctcccacctgtgcctgctgtcccccatgcagcct
ttctacagctgtgcctgccccactggcgttaagctcaaggaggatgggaagacctgccgc
ccaggtgcagagcaggttctgctgctggcccggaggactgacctgaggaggatctctctg
gacctcccagacttcaccgacatcgtccttcaggtggatgacatccgccatgccatcgcc
attgactacgaccctgtggatggatatgtgtactggactgatgacgaggtcaaagccatc
cgccgctcacgtatcgacggcactgaggcccagaccctggtcaccacggagatcaaccac
ccagatggcatcgcggtggactgggtggcccggaacctgtactggacagatactggcact
gaccgtattgaggttaccaggttgaacggaacctcccggcgtattctgatctcagagaac
ttggatgaaccaagggccattgtgctggaccctgtcaatggttacatgtactggacagac
tggggggagaagcccaagatagagcgagctaacctggatggaactgagcgtatcgtgctg
ctcaatacctcgctgggttggccaaacggtttagccatcgactatgaagcaggaaagctg
tactggggcgatgccaagacggacaaaattgaggtgattgacgtggacggctccaacagg
gtgaccctgctggaggacaagcttccccacatctttggcttcacgctgctgggcgactac
atctactggacggactggcagcgacggagcatcgagagggtccacaagaccgacgctatc
cgagagatcatcatcgatcagctgcctgaccttatgggtctcaaggccaccagagtcaca
gagacctccggcacgaacggctgtgcggaagacaacggcggctgcagccacctgtgtttc
caccggccccagggcctgcgctgtgcctgtcccatgggcctggagctgctcagtgacatg
aggatgtgcgtggtgcccgaggctttcctgctcttcaccaaccgggctgacatccgctcc
atctctctcggcacaaactctaacgacgtggccatccccctcaccggggtcaaggaggcc
tccgccctcgactttgacgtctccgagaacaggatctactggactgacgtcagcaccaag
accatcagcagggccttcatgaacggcagctctgtggagcatgtgatagagtttggcctg
gactacccagagggcatggcagtggactggatgggcaggaacgtgtactgggccgacacc
gggaccaaccgcatcgaggtggcccggctggacggacagtaccggcaggtcctggtgtgt
aaggacctggacaaccctcgctccctggccctcgaccccgccaacggttacatgtactgg
actgagtggggaggcaagcccaggatcgccagggcccacatggacggcagcaacatagtg
accctagtggacaaagtgggcagagcaaatggcctcaccatcgactacattgaccagaga
ctgtactggaccgacctggacacctgcatgatagagtcaaccaacatgcaaggtctgcag
agggagatagtggctgacgacctcctccacccgtttggtctgacccagtaccgggattat
atctactggacagactggaaactgcgcagcatcgagcgggccgacaagcgcagcggcctc
aaccgcaccatggtccagggacaccttgagtacgtcatggacatcctggtcttccactcc
tcccgccaggacggtgccaacgactgctcccagaacaacggcaactgtgcccacctgtgc
ctggcgtcgcccgccggcgcccagtgccgctgtgcctcccactacactctggattccaac
agcaggaactgcagctccccctccagcttcctcctgttcagccagaaggcctccatcagc
cgcatggttctgggggagcagagccccgacatcatcctgcccatccacgtcctccgcacc
gtccgggccatcagctatgaccccctggaccacctggtctactgggtggacggacggcag
aacatcaggagggcccgcgacgacggcacacagtcatcagtggtggtgtccaccacttcc
acccaccagcagcagcctgacaagcagccccacgacctgagcctggacccctacagccgt
actgtctactggacttgtgaggccaccaacaccatcaacctccagcgcctagacggagat
gccgtgggcgtggtgctgagggacgaacacgacaaacccagagccatcgttgtcaatgca
gagaaagggtacatgtatttcaccaccatgcaggatcgctctgctaaaatcgagggagcg
tctctggacgggacggagcgggagtctctgttcaccacgggtctgatccggcctgtagcc
ctggcgctggacaacaagctggggaaactcttctgggtggacgctgacctgaaacgcatc
gagagcagtgacctcactggagccaatcggatcgtcctccaggactctaacatcctgcag
cccatgggtctgacggtgctgggagagcacctgtactggatcgacagacagcagcagatg
atcgagcgtgtggacaagctcacgggggagaagaggacccgcatccagggtcgcatctcc
tacctcaccagcatccacgctgtggaagacatggaccctgccgagtttgcttctcatccc
tgttcccgtgacaacggaggctgctcacacatctgcatcgccaaaggagacgggacgcct
cgctgctcctgtcccatgcacctggtcctgctgcccaacctgctcgtctgtggagagccg
cccacctgttccacagagcagttcacctgtgccacaggcgacatcgactgcatccccatg
gcgtggcgctgtgacggcttcgccgagtgtgacgataacagtgacgaggagagatgccca
gtgtgctcggccttccagttccagtgtgacaagggccagtgtgtggatgctcagctacgc
tgtaacggagaggcagactgcacagacaactccgatgaacaggactgtgacactatctgc
ctgcccaaccagttccgctgtaacaacaaccagtgcatcctgaagaaacagcagtgtgac
tcctacagcgactgtgctgacaactctgacgagctcttctgtgaattcctcaccccctcg
tcaaacgacattcactcatctcacaccagcaccataggccctgtcattggcatcatcctg
tcagtgtttgtgatgggagggatgtactttttgtgccagcgggtcgtgtgccgccgttac
aaaggtcccaacggagcctttccccacgagtacatcagtggcactccccacgtacccctc
aacttcatcgcccctagcagctcacagaatggaaccttcaccggtaaagaaggtatctcg
tgtgggaagtctatcatgagttctgtcagtctgatggggagcagcagtagtggaactccg
ctctacgacaggaaccatgtgacaggggcctcctccagcagctcatccagcgccaaggga
gccttctatccacagatgctcaaccctcctccctctccagccacggatcgctccctgtat
aacgcagatgtcttctactcctctaacagtccctccaccaccaggtcgtacaggccttat
cttatgcgaggcgtggcaccccccaccaccccctgcagcactgacgtctgtgacagcgac
tacaccacaagtcgctggaagagcaacaagtactacatggaccttaactcagactctgac
ccctaccctcctccccccacccccaggagccagtacctatcagcagaggagagctgcccc
ccttctccatccacagagcgcagttactttcacctctgtcctccgcccccctcaccctgc
actgactcttcatga
DBGET
integrated database retrieval system
