Oncorhynchus nerka (sockeye salmon): 115134586
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Entry
115134586 CDS
T07952
Symbol
cspg4
Name
(RefSeq) chondroitin sulfate proteoglycan 4
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
one00535
]
115134586 (cspg4)
04091 Lectins [BR:
one04091
]
115134586 (cspg4)
Proteoglycans [BR:
one00535
]
Cell surface proteoglycans
Others
115134586 (cspg4)
Lectins [BR:
one04091
]
C-Type lectins
Others
115134586 (cspg4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Cadherin_4
DUF5562
Motif
Other DBs
NCBI-GeneID:
115134586
NCBI-ProteinID:
XP_029524597
LinkDB
All DBs
Position
LG9a:complement(40439556..40542500)
Genome browser
AA seq
2334 aa
AA seq
DB search
MRALRLVLLSAFLPLLCLPSPSHGASYFGDSFCKITSIQDVSSFHLSLQFKTSRRSGLLL
LAAGMQDYLFLELQNGKLQVRMNLGASEMVLSSSLGLQLNNLQEHKVSIMMQEAKLTMLI
DDLFSTFISVPETQEDLNIDMGVYMGGTGDLDAPYLSNAIPPFRGCMTNVKLESHQFDIL
DSEPIDCHDTKESCSSEFEVGDGEATSFISPDSFVSFPTWSGASGSERTLEFLMKTTIED
ALLTFHPGRESDFIAVGVVGGYLKGVVDFGSGIVVLDNPRVQLDDDQWHRIRVTVDASVF
EMNVDSQPASLSLRGSEQLDLVGNLYMGGIQGKMKDVFRDSSLSRMEEVITSESFIGCMG
EIKVNQKERSLQDALVTKDVHVKCEGEDYDYSSYYDVEATTTTAPVRIRYVSADPNERHC
YPTDDTPEAFRNITKLIEVNPLLVPEGGEAFLDINNLSPTFNLNTVGIRQSQIIFTLQND
PWYGLVDMNIHTRRTKKFTLLDVVNKKIKYLHDGNEKYGDQIQLEVFAHSNSYLPECLKN
PHQYILPVEIIPVNDTPQLSGGNISITENGRTRLNPNLIKIVDSDTRCEELIVTVTSEPP
RGVGYLENAQQPGRSIKEFTCRQLKDGDIYFVHRTGSGGITLQVSDGQSISHSTTFKLSI
TQPQMSLVTNTGLLLSQGSNSSIGIQNLAVIATPRNGDIVFNVTQALRYGELHVLTRNGL
PKQVTSFHQSDLEQDRLRYVSTVSSDLEDVVSDHFQFDVHLGQFSLWNNTFLIKITPSQV
KMAQVVPLEIEGKVEQKAIKHTDLEAEVKGKSVAPETIRYIILKAPTLGTLQMIGRKLVE
GDSFTQQDLWNAQVSYTVQVQRAVANEDQFQFRVFADNQYSPMYTYPIKIQADSDAPVLT
NERLIVLEGGENILNKDYLWVQTSISTNFVYRVTQDPKYGRLIRESPSGQPRFDGAIRMF
SNEDLNLDRLIYQHDGSESSDDEFSFLVFEQAAGSENIRIDGQESMSSMFRISIQSKNDH
VPLRVVDKTFNVVRNGQRLLTTEDILFRDNDSGFNDTQLVFVRTGILSGNIVSPSDPSQP
LFRFTQADMKDQNVLFVHHGADRERFQLQVSDGLHKTTALLQIQAGEAYLRVVNNTMVVM
DHGSTKTLNTSLLSTESNMDIRDASDIRYQVTSPPSDGKIIVSGIEASWFTQEDLKKSVV
SYEHNDQSLSSKDSFGFTVEAKGFSEEGTFRIKIFKQGYLSEPVVITNEVIISYEGEHTV
INQDHLKVEQADILPSEMVFTIKEPPRLGHVVMLTNHSDSTATPSLDYIHSFTQEDVNRG
RILYVSASIQGSDAFAADVSNGFTTVDDLRMMVDIVPRLIPIQALNFSVREGGGMALTTE
LLNISHPFYSAVNVDFVVEEPPQHGDIRYLDGDEQELTFFTWEEVKLGHIYYLHDSTESG
EDNFTLSASAYEIERRSLPVTFTVTVFPVNDEAPKLTCNTGLEVLAGEESDITTSMLNTE
DADTPINELVYSIESTINGLVALKVEPDEEIQNFTQAQINNGEVIFIHEGLESGGFSFTV
TDGEHTSPLYRFVVTARQLTITMETGEELKIFPGTRHAITSAILKAVTNEDGDEISFSLV
RPPRLGRLILANDRNQFEEITSFSQSDLESGAVFYEHQMPEEPFWVVRDSVELLLSSPPA
PAVHHVLPITVSYSAASHNISSQLWKNRGLDIVQGQKKVIDSSILDASNLLASLPEAERG
SLDVVFEVRRFPAHGRVTLGGLNLPQGAPYFMQEDVAQGELEYLHDDSGASVDSFSFRAR
LNSQGRGTLPPSPAQAVVLEEVFNISIRRRDSSPPELVSLDVLLEVLQGSMTVITQKYLN
TRDEDSTPDEVRFTVSKAPTNGRLVDATKGDHISTFTQEAVNKGQVGFVSDGSLSDGFIE
FTVSDGKHHTEPHTLHVGVLARTLVLAKAPEIQVLQGDDETLVTEEMLRATTGGPNEEEV
LYKITSVPKYAAVMVDRQPTSAFTQTQIREGRVSVRFIKSTSPRDSVAFVARSRAANVSS
VLNITVKPLANIPQELLLPRGATVLLDKKLLDATPLANKTRTSPTFSVIQQPQGARFVRA
GGRGPGGDGQPVDTFTQKELDEGRVAMEILNGTGGSQAQDVARFLLKAHGVPPAECVLSF
KTTPYNASAVYPATLLKVPGGSAWSNSNDLPGGAGSPRITPASPRWRGNMDWPHGGDAPT
TAYTDKDSHRKPVVSRRNNLWSILIPILILLLLLLLVAILAFYLVRRNKTGKHNVQTVAG
SKPKNGEISQETFRKTDPANNIPMSQMDSKDADPELLQHCRTTNPELKKNQYWV
NT seq
7005 nt
NT seq
+upstream
nt +downstream
nt
atgagagccctgcgtttggtcctgttgagtgccttcttgcccctgctctgtctgcccagc
cccagccatggagcatcctactttggggacagtttctgcaagataacttcgatccaagat
gtctcctcctttcacctgtcgctgcagttcaagaccagccgacgaagtggactcctcctc
ctggctgcagggatgcaggactacctatttctggaactccaaaatgggaaattgcaggtg
cgaatgaaccttggggccagtgagatggtgctatcatcatctctggggctgcaactgaac
aacctccaggagcacaaggtgtctatcatgatgcaggaggccaaactgaccatgctgatc
gatgatctcttttccactttcatctctgtgcctgaaacccaggaggacctcaacattgac
atgggggtttacatggggggaaccggagacttagacgccccatatctcagtaatgccata
cctccattccgcggctgcatgaccaatgtcaagttggagtcccatcagtttgatattctc
gactccgagcccattgactgccatgatacaaaggagtcctgtagcagtgagtttgaggtt
ggtgatggagaggcgaccagctttatcagcccagactcatttgtgtccttccctacttgg
agcggggctagtggtagtgaaaggaccttggagtttctcatgaagaccaccatcgaggat
gccctactcaccttccaccctggacgagagtcagactttatagctgttggcgttgtgggc
ggttacctaaaaggtgtggtggactttgggagtgggattgtggtactcgacaaccccaga
gtacagctagatgatgatcagtggcataggatcagagtcactgtagatgcgagtgtgttt
gagatgaacgtggacagccagcctgcctctctctctctaaggggctcagagcaattggat
ctagttggcaatctgtatatgggggggatccagggcaagatgaaggatgtgtttcgtgat
agtagcttgtctcgtatggaggaggtaataacatctgagtcttttatcggatgcatggga
gaaatcaaagtgaaccagaaggagagaagcctgcaggacgcgttggtcaccaaagacgtc
catgtgaaatgcgagggagaggactatgactactcaagttactatgatgttgaggcaacc
acaactacggctcctgttcggatccgatatgtcagcgctgaccctaatgaaagacattgc
tacccaactgacgacacaccagaggccttccggaacattacaaaacttattgaagtcaac
cctttgcttgtgcccgagggtggggaagcttttctcgatattaacaaccttagccctaca
tttaacctaaacactgtgggaatccgccaatcccagatcattttcactctacaaaatgac
ccttggtacggactcgtagatatgaacatccataccagacgtaccaaaaagtttacactc
ctggacgtggtcaacaagaaaatcaagtatctccacgacggcaatgaaaagtatggcgat
cagatccagttggaggtgtttgcccatagtaacagttaccttccagaatgtcttaaaaat
ccccaccagtacattctcccagtggagatcatacctgtcaatgacacaccacaactaagc
ggaggaaacatttccatcacagaaaacggtcgcactcgcttaaatcccaaccttatcaag
attgtggattcggacactcgctgtgaggaattgattgtcaccgtgacctcagaacctccc
agaggggttggctacttagaaaatgcccagcaaccaggaagaagtatcaaagagttcaca
tgcaggcagttgaaagacggcgatatatattttgtccacagaactgggagcggtgggata
actctacaggtatctgacggacaatccataagtcattcgaccacttttaaactgtccatt
acacagccccaaatgagccttgtgaccaatactggccttctgttgtctcagggaagcaac
tcttccattgggatccagaacctggccgtcattgccacccctcgtaatggagatattgtg
tttaatgtcacacaggctctgagatatggtgaattgcatgttctcactcgcaatggtttg
cccaaacaggtgacatcttttcaccagtcagatttggagcaagatcgcttgagatatgtt
agcacagtttcaagtgacctggaggacgttgtgtcagatcattttcaatttgatgtccat
cttggacagttttccctatggaacaatacttttttgatcaagatcacaccctcccaggtt
aaaatggcccaagtagttccccttgagattgaaggcaaggtagagcaaaaggcaataaaa
cacactgatcttgaagcagaagtgaagggaaaaagtgtagccccagaaactataagatac
atcattctgaaggcccccacactgggtactcttcaaatgattggcaggaagctagttgag
ggagacagtttcacccaacaggacctctggaatgcccaggtcagctatacagtccaggtg
caaagggcggtggctaatgaggaccagttccagttcagagtctttgcagataatcagtac
tcccctatgtatacctacccaatcaagatccaggctgattcagacgcccctgttttgact
aatgagagactcattgtcttggagggtggggagaatattctgaacaaagactatctatgg
gttcagacatccatctcgacaaactttgtttacagggtgacgcaagaccccaagtatggc
cgtctcatcagggagtccccatctggacagcccaggttcgacggggccattagaatgttc
agcaatgaggatctgaatctagataggctgatttaccaacatgatggctcagagtctagc
gatgatgagttctctttcctggtattcgagcaagcagcaggaagtgaaaacatcagaatc
gatggtcaagagtctatgagcagcatgtttagaatatctattcagtccaagaacgaccac
gtgcctcttagagtggttgataaaaccttcaacgtggtgcgaaacggacaacgtttgctg
accacagaagatatcctcttcagggacaatgactcagggttcaatgatacccagttggtc
tttgttcgcacaggcattctctcaggaaatattgtctccccatcagacccctcgcagccc
ctctttcgtttcactcaagcagacatgaaagaccagaatgttctatttgtgcaccatgga
gcagaccgtgagcgcttccagctccaggtttctgatggcctgcataagaccacagccctg
ctgcagatccaggctggtgaggcctacctccgtgtggtgaacaacactatggttgttatg
gaccatggaagcacaaagacgctcaacaccagtctgttgagtacagagtccaacatggac
attagagacgccagtgacattaggtaccaagtgacatcaccccctagtgatgggaagatc
atcgtgagtgggattgaggcctcttggttcacacaggaggatctgaaaaagagtgtggtg
tcctacgagcataacgaccagagtctgagctccaaggactcgtttggcttcactgtggaa
gcgaaaggattttctgaggaaggtacattcagaataaagatcttcaagcaaggctatctg
tctgagcctgtggtcatcaccaatgaggtcatcatctcctatgagggagagcacactgtg
atcaaccaagatcatcttaaggtagaacaagcagacatcctgccctctgagatggtgttc
accatcaaggagcctcctcgtctgggccacgtggtcatgctgaccaaccactcggacagt
acagctacgcccagcctcgactacatccactccttcacccaggaggatgtcaacaggggg
cgcatcctctatgtctctgcctccatccagggcagtgacgccttcgcggctgacgtcagc
aacgggttcaccactgtggatgacctccggatgatggtggacattgtgcctcgcctcatc
cccatccaggccctcaacttcagtgtgagggagggcggtgggatggcccttaccactgag
ctcttgaatatttctcacccattctacagtgcggtcaacgtggacttcgtcgtagaggag
ccaccgcagcatggggatatccgctacttggatggtgacgaacaagagctcaccttcttt
acctgggaggaggtgaaacttggacacatctactacttacatgacagcacggaaagtggc
gaagacaatttcacactctctgcctcagcctatgagatagagcgccgcagccttcccgtt
accttcactgtcaccgtcttcccggtcaacgatgaggcacctaaactgacatgcaacaca
ggactggaggttttagctggagaggaatcggacatcaccaccagcatgttgaatacagaa
gatgctgacacccccatcaatgagttggtttattccatcgagtcaaccatcaatgggttg
gtggctctaaaggtggaacctgacgaagaaattcagaacttcacacaggcacaaattaac
aatggggaagtcatctttatccatgaaggtctggagtctggaggcttcagttttaccgtg
acagatggagagcacacctcgcctctctaccgctttgtcgttacagctagacagctcacc
atcaccatggaaaccggggaggagctaaagatctttccaggaacaagacatgccatcacc
agtgccattttgaaggcagtgaccaatgaggatggagatgagataagcttctcattggtc
aggcctcctcgcctgggaagactgatcttagccaacgacaggaaccagtttgaagagatc
acaagcttctctcagtcagatctggagtccggggccgtcttttacgagcaccagatgcct
gaggagcccttctgggtggtccgggactctgtggagctcctgctctcctcccctccagcc
cccgctgtgcatcacgtcctccccatcaccgtgtcctactccgcagccagccacaacatc
tcctcacagctctggaagaacagaggtctggacatagtgcaaggtcagaagaaggtgatt
gacagttccatcctggacgcctccaacctgctggccagcctccccgaggcggagcgaggt
tccttggacgtggtctttgaggtgcgccgcttcccggcccatgggagagtcaccctgggg
ggcctgaatctgccccagggtgccccctacttcatgcaggaggatgtggcgcagggcgag
ctggaatacctccacgatgactctggagcctccgtggacagcttctctttccgagcccgg
ctcaactcccagggccgcggcacccttcccccctccccagcccaggcagtggtcctggag
gaggtcttcaacatctcgatccggagaagggactctagtcctccagagctggtgagcttg
gacgttcttctggaggttctccagggctccatgacggtgatcacccaaaagtacctcaac
acccgcgacgaggacagcacgcccgatgaggtgcgcttcacagtctccaaggcgcccacc
aacgggcggctggtggatgccaccaaaggcgaccacatctccacgttcacccaggaggcg
gtcaacaagggccaggtgggctttgtcagtgacggaagcctgtcggacggcttcatagag
ttcactgtgtcggacgggaagcaccacactgagccgcacactctccatgtaggagtcctg
gcccggacgctggtgctggccaaagccccagagatccaggtgctgcagggggacgacgag
accctagtgacagaggagatgttgagggccaccacaggtggccccaatgaggaggaagtc
ctctacaagatcaccagtgtgcccaagtacgctgccgtcatggtggaccggcagcccacg
tcggccttcacccagacccagataagggagggccgggtgagcgttcgcttcatcaagtcc
acctcgccccgggacagcgtggcctttgtggcccggagccgggcggccaatgtctcctct
gtcctcaacatcacggtcaagcctctggccaacatcccccaggaactcctgctgccacgg
ggtgccaccgtgctgctagacaagaagctgctggatgccacgccgctggccaacaagacc
cggacatcacccaccttcagcgtcatccagcaaccgcaaggcgcccgcttcgtgagggct
ggcgggagagggccagggggagacggccagcccgtggacacgttcacccagaaagaactg
gatgagggacgtgtagccatggagatcctgaatggaacaggaggcagccaagcccaggac
gtggctcgcttcctgctcaaggcccacggggtccctccagctgagtgcgttctctccttc
aagacgaccccttacaacgcctcagcggtctacccggccactctccttaaggtccctggc
gggtctgcatggtccaatagcaacgacctccctggaggggcggggtccccacgcatcacc
ccagccagccctcgctggaggggcaacatggactggcctcatggaggagatgcccctacc
actgcctacactgacaaagactcccataggaaaccagtggtgtccaggaggaacaacctg
tggtccatcctcatccccattctgatcctcctgctcctcctcctgctggtggccatattg
gctttctacttggtgcgtcgcaacaagacgggcaaacacaatgtgcagacggtggctggc
tccaagcccaaaaacggagagatcagccaggagaccttccggaaaaccgacccggccaat
aacatccccatgtcccaaatggactccaaagacgccgacccggaattgctgcagcactgt
cggacaacgaacccggagttaaaaaagaaccagtactgggtatga
DBGET
integrated database retrieval system
