Oncorhynchus nerka (sockeye salmon): 115134695
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Entry
115134695 CDS
T07952
Symbol
tdrd12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
one03036
]
115134695 (tdrd12)
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
115134695 (tdrd12)
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Gene silencing
piRNA pathway
115134695 (tdrd12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
DEAD
Helicase_C
MCPVI
Motif
Other DBs
NCBI-GeneID:
115134695
NCBI-ProteinID:
XP_029524748
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All DBs
Position
LG9a:complement(5079906..5098570)
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AA seq
1411 aa
AA seq
DB search
MLEINVLKVENPSCLWGRFVKGPGIEAVENKKEYDDLQMKMNLFYHEVNLHVQKIKLSTI
ESGQVCVVYWSALRSWCRAIVESLFLGTVGTQAMCFLVDHGERVIVSSDEIRALLDTFLQ
LPFWVRKFQLAGVHPMTLHVSGDCLEKAELIPSMQWDSSATRYLHNLLQASTEMEAVLCE
TQLDCTAIELYLTVKNVKICVNDDLVSKKFAYFTSQKAHQTSGKNGVVDRSPAVLACDIF
SETQNFLATDGCTARSLSDFRLRQQDPNAHNQVSDQCQLTTSVKEASKTSNEISNPKKSP
ENGRNPLEGGKKKAAQPQNKKFKTFSEIDGDEVERDDEPGEETDRSLDSELFRNLNLLRF
KKFLNPTSSTQRAAIPNTELIEQKEERGVQRISAVTEKAEEEPVTAPQQIGQQTETAVCT
PSDLVDRTQEFVFTEQPTIEEELVCARLLQLLNPDPLNTDVGSSEVTIVHTDPSRSGIMV
HSAFTLDPCTSLANAPITDTFRRILMRNKYAGPSVAESYCWPAVARGCDTVLISHSGDQP
LTYIPPFLAHMQLSSVFSALSSRTGPIAVILCPGWEKAQTVIDLLEESQTFQVLHPMVIL
LGLGKDEAKTVKIQNNCQVVVTTPFSLVRLLRLHCFLFLRLCHLALDEVDLLFSRAPDEM
TIILQHFQRVTASEERVSCPRQIIAVGKRWSRPLEGLLLNHMSNPTVVVTVMEEAALYGN
VHQIILLCLDCTKISVLLGALDFTPDVAQKTLVITNSAEEAENVFKAVSNTSAFSLKVHE
ELTYQFDFVTEQWKKPIGPGTHVILVTTNECMKSLGICDATCVVHYGFPSSPKLFGSRLF
CMSQNFQNLSDKERAAESTSHPAKSVLLLSERNARHVIGVLRYLKRTEASLPPELLHFAQ
GVLRAKEEQKSDMPLCRYLKSFGFCRDSSVCSYRHSISPITDQPLQPDSGTIVVLPLFIK
TASVYYGRIVSKKEDRYESLAAAMTTYYAAEKLGAKEVLEGGLYGVQEDEVYHRVRVTSV
PDKGEWMFCSVRALFLDEGREQEVKSHQLLQLPAQFHTLPPQALEIIVCRAMPIDAEVKW
NPKVTRAISQKIKGLQHQAKVVLCLGNTVFVDPMVRMTRLPGLKTFINEYNVHAEILSTG
MGTSNPQHLDLLNELCQGAGPGASAGDAPLTTVPDGSGVTLEDKVQAAEEALVYRMRAAV
ERLHCGQEVSVDQPQTQTSVLHAQTDLFQCHMKASADLHQMDQKVFAHAPQPRMNDVFIY
PSQLSPKPQEATLAAVPDPSEAQLPTLMDRTQIPSPLPTPSEAQISAPLPSTSEPQLPAP
TTEHNDPKMEQWRSLIANLQGATQTRRHTALQGFTPKDWISAVPCPIENGNLIDEKQVNG
QQVNGEKVISVVKVDVDAPKRYLRYTYPLYF
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgcttgaaataaatgttttgaaagtggagaacccgtcctgtctgtggggtcggtttgtg
aagggtccagggatagaagcagtcgagaataaaaaagaatatgatgatctgcaaatgaaa
atgaaccttttttaccacgaggtcaacttacatgtgcagaagatcaaactctcaactata
gagtcgggacaggtgtgtgtggtgtactggtctgccctaaggagctggtgccgagccatc
gttgagtctcttttcctgggcaccgttggaacccaggccatgtgtttcctagttgaccac
ggagagcgcgtcatcgtcagctcagatgagattcgggctctgttagatacgtttttgcag
ctgcccttctgggtgaggaagtttcagctcgctggtgttcatcccatgacgctgcacgtg
tctggagactgcctggagaaagctgagctcataccatcaatgcaatgggacagctctgcc
acacgctatttgcacaatctcttacaagcttctactgagatggaggcagtgttgtgtgaa
acacagttagattgcactgccattgagctctacttgaccgtcaaaaatgttaagatctgt
gtgaacgacgatctggtctcaaagaagtttgcgtacttcacaagccagaaggcccatcaa
accagtggaaaaaatggtgttgttgatagatccccagccgtcttggcttgtgacatcttt
tctgaaactcagaacttcctggctactgacggctgtaccgcacgatcactttcagatttc
cggctccggcagcaggacccaaacgctcataatcaagtgtctgatcagtgccagctaacg
acatctgtgaaagaggcatcgaagacttccaatgagatatcaaatccaaagaaaagccca
gaaaatggaagaaatcccttagagggagggaaaaagaaggcagcgcagccgcagaacaag
aaattcaagacattttcagagattgatggcgacgaagtcgagagggacgacgagcccgga
gaggaaaccgacaggtctcttgattcagaactgttcagaaatctgaatctgttaagattc
aagaagtttctgaatcctacttcgagcactcaaagggctgctattcccaatactgagctt
attgaacagaaggaggaacgtggtgttcagaggatctctgcggtcacggagaaagcagag
gaagagccggtcactgcacctcaacagatcggacaacagactgaaacggctgtatgtact
cctagtgacctagtagaccggacacaagagtttgtcttcacagagcagccaaccattgag
gaggagcttgtctgcgctcggttgttgcagttgctaaaccctgaccctctgaacacagat
gtaggctcatcagaagtcactatcgtccatactgatccaagcaggagtgggataatggtg
cattctgcctttactctggacccctgcaccagtctggccaatgctccaatcactgacacc
ttccggaggatcttgatgaggaataagtatgccggcccgtctgtggctgagagttactgc
tggccggcagtggccaggggctgtgacacggtcctcatctcccacagcggagaccagccc
ctcacctacattcccccgttcctggcccacatgcagctctcctccgtcttcagcgccctc
tcttctcgcaccgggcccatagcggtgatcctgtgcccggggtgggagaaagcccagact
gtgattgacctgctggaggagagccagaccttccaagtcctccaccccatggtcatactg
ttgggactgggaaaggatgaggcaaagactgttaagatccagaacaactgccaggtggtg
gtgaccactccgttcagccttgtgcgtctgctgcgtttgcactgtttcctgttcctgcgg
ctgtgtcacctggcgctggacgaagtggacctgctcttttctagagccccggacgagatg
accatcatcctgcagcacttccagagggtgacagccagcgaggagcgtgtgtcgtgcccc
agacagatcatcgcagtgggaaagcgctggagccgccccctggagggcctgctcctcaac
cacatgagcaaccccaccgttgtcgtcacggtgatggaggaggccgcactctacggcaat
gtgcaccagattatcctgttgtgtctggactgcactaagatctctgtcctgctcggggcg
ctggacttcacccccgacgtggcccagaagaccctcgtcatcaccaactctgctgaggag
gctgaaaatgtcttcaaggctgtttcaaacacatcagccttctccctgaaggtccacgag
gagttaacctaccagtttgactttgtgactgagcagtggaagaagcccattggacctggc
actcatgtcattctggtcaccaccaatgagtgtatgaagtctttgggtatctgtgatgct
acgtgtgttgtgcactacggcttcccaagctcacctaagctgtttggcagccgtctgttt
tgcatgtcccagaacttccagaacctttccgacaaggagcgtgctgcagagagcacgtct
caccctgccaagtcagtgctgctgctatctgagaggaatgcccgtcacgtaatcggggtc
ctgcgctacctaaagcgtactgaggcctcgctgcctccagagctgctgcacttcgcccag
ggagtcctgcgggccaaggaggaacagaagtcagacatgcctctgtgcagatacctcaag
agctttggcttctgcagggacagcagtgtttgttcttatcgacacagcatcagccccata
acagaccagccactgcaaccagactctggaactattgtggttctgcccttgttcatcaag
actgcttccgtctactacggacgcattgtgagtaagaaggaggaccgttatgagagcctg
gcagcagcaatgactacatactacgccgctgagaagctgggtgctaaggaggtactggag
ggagggctgtacggagtacaagaggatgaggtctaccacagggtgcgggtgacttcggtg
ccggacaagggtgagtggatgttctgcagcgtgagggctcttttcctggatgaggggcgt
gagcaggaggtgaaatcccaccagctgctgcagctgccggcccagttccacacactgccg
ccccaggctttggaaatcatcgtctgcagggccatgcccatcgacgctgaggtcaaatgg
aaccccaaggtcaccagggccatcagtcagaagatcaaaggcttgcagcaccaagccaag
gttgttctgtgtttgggaaacacggtcttcgtagatcccatggtgcggatgacacgacta
ccaggcctgaagaccttcataaatgaatacaacgtccacgctgagatcctgagcacgggg
atgggcaccagcaaccctcagcacctggacctgctgaatgagctctgccagggggctggg
cctggagccagtgctggggatgccccgctcaccacggtgccggatggctctggggtgacc
ttggaggacaaggtgcaggctgcagaggaggccctggtctacaggatgagggcagctgtc
gagcgcttacactgtggccaagaggtttctgtagaccagccccagacccaaacgtctgtg
cttcatgcccagacagacttgttccagtgccatatgaaggcctcagcagatctgcaccag
atggaccagaaagtctttgctcatgcaccccagcctcggatgaacgatgtctttatatac
ccgtcccagctctcgcccaagccacaggaggccacattagcagcagttcctgatccgagc
gaggctcaactaccaacactcatggacaggacccagataccttcccctctcccaacacct
agcgaagcccagatatctgccccactcccatcaactagcgagccacagttacctgcccca
acaactgagcacaacgaccccaaaatggagcagtggaggagcctcatagctaacctccaa
ggcgccacacaaacacggaggcatacagctctacaaggattcacccccaaagactggatt
tctgcagttccctgccccattgaaaatggtaatttgatcgatgagaagcaagtcaacggc
cagcaagtcaacggtgagaaagtcatcagtgttgtcaaggttgatgtggatgcaccaaaa
aggtatttgaggtacacgtatcccttatatttctga
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integrated database retrieval system
