Oncorhynchus nerka (sockeye salmon): 115134816
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Entry
115134816 CDS
T07952
Name
(RefSeq) transcription factor Sox-19a-like
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115134816
Transcription factors [BR:
one03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
115134816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
115134816
NCBI-ProteinID:
XP_029524864
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All DBs
Position
LG9a:complement(43046069..43048213)
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AA seq
311 aa
AA seq
DB search
MVNMYNIMEHQLKSTGPSHHLGTGMPPANGGGGHGGGHTGSKPPAIQPDPMDKVKRPMNA
FMVWSRGERRKMAQENPKMHNSEISKRLGVAWKSLTDAEKRPFIDEAKRLRAVHMKDYPD
YKYKPRRKTKLMPKNNTLAAQYQMSAGNHLLSASTAQGQGGNPRIDSYGWGHTGGYTAAM
QSEALGYSQQLHRYDLSALQYQSSVAQAQAYMNGANAYSPMSYSSSPQQVSPVMSMVKQQ
SDGHSMSPSPTGTHNHHQAQRGPQVQGDHLRDMISMYMPGGDASDAQRGYSASAANIQQH
YLGGSAPLTHL
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggtaaatatgtataacattatggagcaccaactcaagtccactggtccctcgcatcat
cttggaacagggatgccacctgccaatggaggaggggggcacgggggcggccacacagga
tccaaaccaccggcaatccaacccgacccgatggacaaagtcaagcggcccatgaatgcc
ttcatggtatggtctcgcggtgagcgacggaaaatggcccaggagaatcccaaaatgcac
aattctgagatatccaaacgactgggtgtcgcgtggaaatctctgacagacgcagagaaa
aggcccttcattgacgaggccaagcgcctccgcgcggtgcacatgaaggattatccagac
tataaatacaaaccccgtcgtaaaaccaaactaatgccgaagaacaatactctagccgcg
cagtatcagatgtcggctggtaaccacctgctgagtgcgtccacggctcagggacaaggt
ggaaaccccagaatcgacagttatggctggggccacaccgggggctacacagcggcgatg
cagagcgaggcgctcggctacagtcagcaacttcaccgctatgacctgtcagcacttcag
tatcagtccagcgtggcccaggcgcaggcctacatgaatggtgccaacgcatacagcccc
atgtcctacagcagcagcccccagcaggtcagcccagtgatgtctatggtgaagcagcag
tctgatggccacagcatgtccccctcccctacggggacccacaaccaccaccaggcccag
cgtggtccccaggtccagggggaccatctcagagacatgatcagcatgtacatgcctggg
ggagatgcttcagatgcccagagggggtactctgcctcggcagctaacatccagcagcat
tacctgggagggtcagctccactcacccacctttga
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