Oncorhynchus nerka (sockeye salmon): 115135013
Help
Entry
115135013 CDS
T07952
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1-like isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04517
IgSF CAM signaling
one04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
115135013
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
115135013
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
one04812
]
115135013
Cytoskeleton proteins [BR:
one04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
115135013
Intermediate filaments
Intermediate filament-binding proteins
115135013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
SOS1_NGEF_PH
CH_2
Motif
Other DBs
NCBI-GeneID:
115135013
NCBI-ProteinID:
XP_029525042
LinkDB
All DBs
Position
LG10:4001949..4126393
Genome browser
AA seq
2354 aa
AA seq
DB search
MELQRATSMPGPLSPGHLSPGALSPSGPGPSLATSPVPDPGYSAKQAAFNYNQLEGRFKQ
LQDEREAVQKKTFTKWVNSHLARVSCRITDLYMDLRDGRMLIKLLEVLSGERLPKPTKGR
MRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDIRVETE
DNKEKKSAKDALLLWCQMKTAGYPNVNIHNFSTSWRDGMAFNAILHKHRPDLIDFDKLKK
SNAHHNLQNAFNLAEQHLGIHKLLDVEDISVDHPDEKSVITYVVTYYHYFSKMKALKVEG
KRIGKVLDNAIETDNMIQKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTY
RTVEKPPKFTEKGNLEVLLFTIQSKMRANNQKVYMPRDGKLISDINKAWERLEKSEHERE
LALRTELIRQEKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAATKKHEAI
ETDIGAYEERVQAVLSVAKELEAENYHDIKRVTARKDNVLRLWEYLLELLKARRIRLEMN
LGLQRVFQEMLHIMDWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVEADIAIQANRVKAV
NNNAQKFAIDAEGYKPCDPQVIRDRMAHMEFCYAELSQLAADRCARLEESRRLWKFFWEM
AEEEGWIREKEQILSSEDCGKDLTGAVRLLSQHRAFEDEMSGRAGHLQQTIKQGEELVAA
DHFGADKIRKRIQDIQAQWAALEGLSAVRKARLEEACNLHQFQADADDIDAWMLDVLRIV
SSVDVGHDEFSTQALVKKHKDVAEEITSYRPVIDALHEQSKTLPKEQTGSEEVQGRLAGI
EERYKEVAELTRLRKQALQDALALYKMFNEAAACEVWIDEKEQWLNSMEIPEKLEDLEVV
QHRFESLEPEMNNQASRVAVVNQIARQLIHNGHPSEKEIKAQQDKLNTRWSQFRDLVDLK
KDSLNSALGVQNYHLECNETKSWIREKTKVIESTQELGNDLAGVMALQRKLTGMERDLAA
IEDKLGELGKEGECLATEHPDQAQGIMGRLGEITGVWDEMKGTLKNREESLGEASKLQQF
FRELDDFQSWLSKTQTAIASEDMPNTLTEAEKLLAQHEGIKNEIRNYEEDYQKMRDMGEM
VTQGQTDAQYMFLRQRLQALDTGWNELHKMWENRQNLLSQSHAHQLFLRDTKQAEAFLNN
QEYVLAHTEMPRTLEGAEGAIKKQEDFMTTMDANEEKIKAVVDTGRRLVSDGNVNADRIQ
EKVDSIDERHKKNRMMASELLCKLKDNRDLQKFLQDCQELSLWINEKMLTAQDMSYDEAR
NLHSKWLKHQAFMAELQSNKEWLDKIEKDGMQLIAEKPETESMVKEKLAALHKMWDDLES
TTQTKAKCLFDANKAELFTQSCADLDKWLVGVDGQIQSDDYGKDLTSVNILLKKQQMLES
QVEVRQKEVEELQSQAQVLSQEGKDTDEVDGQRRIVEKKFQQLLDPLRKRKGNLMASREI
HQFNRDMEDEILWVEERMPLAISTDHGNNLQTVQLLIKKNQTLQKEIQGHQPRCDDIFER
SLQVLKDDDDSLSGEEIHQRLADLRRLWAQILEETGKRHGRLEEAHMAQQYYFDAAEAEA
WMSEQELYMMSEEKAKDEQSSVAMLKKHQILEQAVEDYAETVHQLSQTSRGLTAAGHPES
ERIGMRQSQVDKLYAGLKDLSEERRGKLDERFRLFQLNREVDDLEQWIAEREVVAGSHEL
GQDYEHVTMLQERFREFARDTGNIGQERVDTVNQLADELINSGHTDAATIAEWKDGLNEA
WADLLELIDTRTQILAASFELHKFYHDAKEILNRILDKHKKLPEEMGRDQNTVETLQRMH
TTFEHDIQALGTQVRTLQEDAVRLQSAYAGDKADDIQKREGEVLEAWRTLLEACDGRRVR
LLDTGDKFRFFSMVRDLMLWMEDVIRLIEAQEKPRDVSSVELLMNNHQGIKAEIDARNNS
FTNCIELGKSLLARKHYALEEIKEKLLQLTDKRKDMIDKWEDRWEWLRLVLEVHQFGRDA
GVAESWLLGQEPYLSSREMGQNVDEVEKLIKRHEAFEKSAATWEERFSALERLTTMELLE
VRRQQEEEERKRNPPPAETQADDASPQQREGEQVSQNGLPSDQDSPRDNVEESDIVNGVE
EPSPGGSPGEARKVKPSQAATLPPKSQDSDPANQMEGYLHRKHEWEGHNKKASSRSWHNV
YCVINNREMGFYKDHKSASQGIPYHNQIPISLKDAACEVALDYKKKKHVFKLKATDGNEY
LFQANEDEEMNSWMQAISSAASSDKTEMTPSSHSTPTSSRAQTLPASVALATESSPGKRE
KDKEKRFSLFSKKK
NT seq
7065 nt
NT seq
+upstream
nt +downstream
nt
atggagctacagagggcgaccagtatgcctggccccttgtccccagggcatctctctcca
ggggccctgtccccttctgggcctggcccctctctagccaccagccctgtccctgatccg
ggctactccgccaaacaggctgccttcaactacaaccagctggagggccgctttaagcag
ctgcaagatgagcgcgaggcggtgcagaagaagaccttcaccaagtgggtcaactcccac
ctagccagagtgtcctgcaggatcactgacctctatatggacctgagggatggacgtatg
ctcatcaaactactggaggtcctctctggggagagactgcccaagcccactaaggggcgc
atgcgtatccactgcctggagaacgtggacaaggccctgcagttcctcaaggagcagagg
gtccatctggagaatatgggctcccacgacattgtcgacggcaaccaccgcctcaccctc
ggcctaatctggaccatcatcctccgcttccagatccaggacatcagagtggagactgag
gacaacaaggagaagaagtctgctaaagatgccctgctgctgtggtgccagatgaagact
gcaggatatcccaacgtgaacattcacaacttcagcaccagctggagagatggcatggcc
ttcaacgccatcctccacaaacacagacctgacctgatagactttgacaagctgaagaag
tccaacgcccaccacaatctgcagaatgccttcaacctggcagagcaacacctgggcatc
cacaagctgctggatgtagaggatatcagcgtggaccacccggatgagaagtccgtcatc
acctatgttgtgacctactaccactacttctccaaaatgaaggctctgaaggtggaggga
aaacgtattgggaaggtgctggacaatgccattgagacagataacatgattcagaaatat
gagagtctggcctctgacctcctggaatggattgaacagaccatcatcatcctcaacaac
cgcaagtttgccaactccttagtgggtgtgcagcaacagcttcaggccttcaacacctac
cgtaccgtggaaaagccccccaagttcacagagaagggcaacctggaggttctcctcttc
accattcaaagtaagatgagggccaacaatcagaaggtctacatgccacgggacggcaaa
ctcatctcagacatcaacaaggcctgggagaggctggagaagtctgagcatgagagggag
ctggcgctgaggacggagctgattcgtcaggagaaactggagcaactggcccgccgcttc
gaccgcaaggccgccatgagagagacctggctgagtgaaaaccaacgcctcgtctcgcag
gacaactttggcttcgacctgcaggcggtggaggctgccaccaaaaagcacgaggccatt
gagactgacatcggcgcctacgaggagcgtgtgcaggctgtgctctctgtggccaaggag
ctggaggcggagaactaccacgacatcaagcgcgtgactgcgaggaaggacaatgtgctg
cgtctgtgggagtacctgctggagctgctgaaggcccggcgcatccggctggagatgaac
ctgggcctgcagagggtctttcaagagatgctccacatcatggactggatggacgagatg
aagatgctgctgctgtcccaggactatgggaaacacctgctgggagtggaggacctgctg
cagaagcatgctctggtggaggctgatatcgccatccaagccaaccgcgtcaaagccgtc
aacaacaacgctcagaagttcgccatcgacgcagagggctacaagccctgtgacccccag
gtgatccgagaccgcatggcccacatggagttctgctacgcagagctgagccagctggcc
gccgatcgctgcgcccgcctggaggagtcccgccgcctctggaagttcttctgggagatg
gccgaggaggagggctggatccgggagaaggaacagatcctgtcctcggaggactgtggc
aaggacctgacgggggccgtgcgcctgctgagccagcatcgcgccttcgaggacgagatg
agcggtcgcgctggccacttgcagcagaccatcaaacagggagaggagctggtggccgcc
gaccacttcggagccgacaagatccgcaaacgcatccaagatatccaggcgcagtgggcg
gccctggaggggctgtctgcagtcaggaaggcccggctggaggaggcctgcaacctgcac
cagttccaggctgacgccgatgacatcgacgcctggatgctggatgttctccgcatcgtg
tccagtgtcgacgtgggccacgacgagttctccacccaggccctggtcaagaagcacaag
gacgtggctgaggagatcaccagctaccgaccagtcatcgacgccctgcacgagcagtcc
aaaaccctacccaaggagcaaactggctcagaggaggtgcaggggcgcctggcaggcatt
gaagagcgctacaaggaggtggctgagctgacccggctgaggaaacaggccctgcaggat
gccctggccctctataagatgttcaacgaggcggccgcctgtgaggtgtggatcgatgag
aaggagcagtggctcaatagtatggaaataccagagaaactggaagatctggaagtggtt
cagcacaggtttgagagtttggagccagagatgaacaaccaagcatcccgcgttgccgtg
gtgaaccagattgctaggcaactcatccacaacggtcacccgagtgagaaggagatcaaa
gcccaacaggacaaactcaacaccagatggagccagttccgtgacctagttgacctgaag
aaagactccctcaactcagctctgggcgtgcagaactaccacctggagtgcaatgaaacc
aagtcgtggatccgtgagaagaccaaggttatcgagtccacccaggagctgggcaacgat
cttgccggggtcatggccctacagcgcaaactcaccggcatggagcgtgacctggctgcc
atcgaggataagctgggagaactggggaaggagggggagtgcctggcgactgagcaccct
gaccaggcccagggcatcatgggtcgtctgggggagatcacaggggtgtgggatgagatg
aagggcaccttgaagaatcgcgaggaatctcttggcgaggccagcaagctgcagcagttc
ttccgggagctggatgacttccaatcatggctgtccaagacccagacggccatcgcctca
gaggacatgcccaacacactgacggaggccgagaagcttctggcgcagcacgagggcatc
aagaacgagatccgcaactacgaggaggactaccagaagatgagggacatgggtgagatg
gtgacccagggccagacggacgcccagtacatgttcctgaggcagaggctgcaggccctc
gacacgggctggaacgagctgcacaagatgtgggagaaccgtcagaacctactgtcccag
tcccatgcccaccagctgttcctcagggacaccaagcaggctgaggccttcctcaacaac
caggagtatgtgctggcccatacagagatgcccaggactctggagggggcggagggagcc
attaagaagcaggaggacttcatgaccaccatggacgccaacgaggagaagatcaaagcc
gtggtggacaccggacgcaggctggtcagcgatggaaatgtcaacgctgaccgcatccag
gagaaagtggactctatcgatgagagacataagaagaaccgcatgatggccagtgagctt
ctctgtaagctgaaggataacagagacctgcagaagttcctccaggactgccaagagctc
tccctgtggatcaatgagaagatgctcacagctcaggacatgtcgtacgacgaagccaga
aacctccacagcaaatggctcaaacaccaggcgttcatggccgagctgcagtccaacaag
gagtggctggacaagattgagaaggatggaatgcagctgatagctgagaagccggagact
gagtccatggtgaaggaaaagctggcagcgctccataagatgtgggatgacctggagtcc
accacccagaccaaggccaagtgtctgtttgatgcaaacaaggccgagctgttcacccag
agctgtgccgacctagacaagtggctggtaggagtggatggacagatccaatcagacgac
tacggcaaagatctgaccagtgtcaacatcctgctcaagaaacaacagatgctggagagc
caggtggaggtgcgtcagaaggaggtggaggagctgcagagccaggcccaggtcctcagc
caggaggggaaggatacggacgaggtggacggccagcgccgcattgtggagaagaagttc
cagcagctgctggaccctctacggaagaggaagggaaacctcatggcctcccgcgagatc
caccagttcaacagagacatggaggatgagatcctctgggttgaagagcgaatgccactt
gcaatatcaacagaccacggaaacaacctgcaaacagtccagttactcatcaagaaaaac
cagaccctgcagaaggagatccagggccaccagccccgttgtgatgacatctttgagcgg
agcctgcaggtcctcaaggatgatgacgacagcctcagcggcgaggagatccaccagcgg
ctggccgacctgcggcgcctgtgggcccagattctggaggagacgggcaaacgccatgga
cgcctggaggaggcccacatggcccaacagtactactttgatgctgctgaagccgaggcc
tggatgagcgagcaggagctctacatgatgtcagaggagaaagccaaggatgagcagagc
tctgtggccatgttgaagaagcaccagatactggagcaggctgtggaagactacgctgaa
actgtccaccagctgtcccagacaagtagaggcctgacggccgccggacaccctgaaagt
gagcggatcggcatgcgtcagtcccaggtggataagctgtacgcagggctcaaggacctg
tcggaggagaggagggggaagctggacgagaggttccgtctgttccagctcaacagggag
gtggatgacctggagcagtggatcgctgaaagggaagtagtggctgggtcacatgagctg
ggacaggactacgaacatgtcacgatgcttcaggagcgtttccgtgagtttgctcgcgac
acgggcaacatcggtcaggagcgtgtggacaccgtcaatcagttggcggatgagctcatc
aactcaggccacaccgacgcggcaacaatcgcggagtggaaggacgggctgaatgaagcg
tgggccgacctgctggagctaatcgacacacgcacgcagatcctggcggcttcctttgag
ctgcataagttctaccatgacgccaaggagatcctcaaccgcatcctggacaaacacaag
aagctgcctgaggagatgggccgagaccagaacacagtggagaccctgcagaggatgcac
accacctttgaacacgacatccaggccctggggacacaggtgaggacgttgcaggaggat
gctgtgcgtctgcagtctgcctacgccggagacaaggctgatgacatccaaaagagagag
ggtgaggtgctggaggcctggaggaccctgctggaggcctgcgacggccgcagggtcaga
ctgctcgacaccggcgacaagttccgcttcttcagcatggtgcgagacctcatgctctgg
atggaggacgtcatccgcctcatcgaggctcaggagaagcccagggacgtgtcgtccgtg
gagctcctgatgaacaaccaccaaggcatcaaggctgagatcgatgcccgcaacaacagc
ttcaccaactgcatcgagctgggcaagtccctgttggcaaggaaacactacgcattagag
gagatcaaagagaagttactacagttgacagacaaaaggaaagacatgattgacaagtgg
gaagacagatgggagtggctaagattggttctggaggtgcaccagtttggtagggatgcg
ggtgtggctgagtcatggctgctgggacaggagccatacctgtccagcagggagatgggg
cagaacgtggacgaggtggagaaactcatcaagagacacgaggcctttgagaagtccgct
gccacctgggaggagcgcttctcagcgctggaacggctgactacgatggaattactggaa
gtgagaagacagcaagaggaggaagagaggaagaggaatccgccacctgcagagacccag
gcggacgatgcatcgccacagcagagggagggtgagcaggtgtctcagaacggactgcca
tcggaccaggactcccctcgggacaacgtagaggaaagtgacatcgttaatggggtggag
gagcccagcccaggcgggtcgcccggtgaagcacgcaaggtcaagcccagccaggctgcc
acactcccgcccaagtcccaggactcagacccagccaaccagatggaaggctacctgcac
cgcaaacacgagtgggagggtcacaacaagaaggcatccagcagatcctggcacaatgtg
tattgcgtgatcaacaaccgggagatgggcttctacaaagaccataagagtgccagccag
gggatcccttaccacaaccagatccccatcagtctgaaggatgctgcatgtgaggtcgcc
ctcgactacaagaagaagaaacatgtgttcaaactgaaagctacagatggcaatgagtat
ctcttccaagccaacgaggatgaggagatgaactcgtggatgcaagccatttccagcgct
gcgtcctctgataagacagagatgacccccagcagccatagcacccccacctccagccga
gcccagaccctgcccgcctccgtcgccctggcaactgagtccagccctggcaagcgtgag
aaggacaaagaaaagcgcttcagccttttcagcaaaaagaaatag
DBGET
integrated database retrieval system
