Oncorhynchus nerka (sockeye salmon): 115135022
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Entry
115135022 CDS
T07952
Symbol
pnpt1
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, mitochondrial isoform X1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115135022 (pnpt1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115135022 (pnpt1)
03016 Transfer RNA biogenesis [BR:
one03016
]
115135022 (pnpt1)
Enzymes [BR:
one01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
115135022 (pnpt1)
Messenger RNA biogenesis [BR:
one03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
115135022 (pnpt1)
Transfer RNA biogenesis [BR:
one03016
]
Prokaryotic type
tRNA degradation factors
115135022 (pnpt1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
KH_KRR1_2nd
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
115135022
NCBI-ProteinID:
XP_029525063
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Position
LG10:4385274..4402732
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AA seq
763 aa
AA seq
DB search
MKHLLRLGPTLARLNVRLCHQSVWNSHGTIQKVGVNLGEKKLEISTGKLARFADGSAVVQ
LGNTTVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIPTNHLRRELGTTENEILTSRLI
DRAIRPLFPAGYFYDTQVLCNLLAVDGVNDPDVLAINGASAALTLSDIPWNGPIGAVRIG
LVDGEFLVNPTRKQMASSTINLIVAGAPLSQVVMIEASAENVLQQDFCHAVKVGVKHTQQ
IILAIQQMAREAKVTKRTPPKIFSAPEEMIEHTRQFASEKVYAVFTDFTHDKISRDDAIN
KVRLETEEQIKEKYPHAEPYEVMESFNMVSKEVFRNLVLNEYRRCDGRNLTSLRNISCEA
DVFKPLHGSALFQRGQTQVLCSVTFDSLESSIKTDIITTALSGVKDKNFMLHYEFPPYAT
NEIGKMSGMNRRELGHGALAEKSLRPVIPKDFPFTIRITSEVLESNGSSSMASACGGSLA
LMDAGVPITSAVAGVAIGLISKANPEKPSEIQDYRILTDILGIEDYLGDMDFKLAGTNKG
INALQADVKIPGLPLKLVMEAIQQATVAKREILGIMNNTIAKPRANRKENGPVVENVRVP
VSRRARFVGPGGYNLHRLQAQTGVTISQVDEETFSVFAPTPGAMNEAQEFITEICKDDQE
QQLEFGAVYTATIMEIRDIGVMVKLYPNMSAVLLHNSQLDHKRIKHPSAIGLEVGQQIQV
KYFGRDPTDGRMRLSRKVLQSPAATVVKTLSEKQSITMGTGNG
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgaaacatttactgaggcttgggcccacgctggccagactaaatgtgcggttgtgccac
caaagtgtctggaacagccatggaacgatacaaaaagtgggtgtgaacttgggtgagaaa
aaacttgagatctcaacagggaaacttgccagatttgcagatgggtcagctgttgtgcag
cttggtaatacaacagtgatggtgacagctgtcagcaaaacaaaaccgtccccctcccaa
tttatgccactagtggtggactacagacagaaagcagctgctgctggtagaatccccact
aaccacttgcggcgggagttgggcaccactgaaaatgagattctgactagtaggctaata
gacagggcaatcagacccctttttcctgctggttatttctatgacactcaggttctgtgt
aacctgttggcagttgatggtgttaatgatccagatgtactggctatcaatggagcctct
gctgcccttaccctttctgacattccctggaatgggcccattggtgcagtgcgcattggc
ctggtggatggcgagttcctggtgaacccaacacgaaagcaaatggcttccagcactatc
aatctgatagtggctggagcacctctcagccaagtggtgatgatcgaggcatctgctgag
aatgtgttgcagcaggacttctgtcatgcagtcaaggttggcgtgaagcacacacagcag
atcatattggctattcagcagatggccagagaagcgaaagtgaccaagcgcacccctccc
aaaatattttctgcgcccgaggaaatgattgagcacacacgacaatttgcctctgaaaag
gtctatgctgttttcacagacttcactcatgacaagatttccagagatgacgccattaac
aaagtgcgactagaaacagaggaacaaataaaagagaaatatcctcatgcagaaccttat
gaggtgatggaatccttcaacatggtgtctaaagaggtcttccgcaatctggttttgaat
gaatataggaggtgtgatggaagaaacctgacttcattaagaaatatttcctgtgaggca
gacgtttttaagccccttcatgggtctgcacttttccagaggggacagacacaggttctg
tgctctgtaacatttgactccttggagtccagtattaaaacagacatcattactacagca
ttaagtggagtcaaagacaagaatttcatgcttcactatgagtttcctccttacgcaacc
aatgagattggaaagatgagtggaatgaacagaagagagcttggtcatggggcactggcg
gagaagtctttgagacctgtcatcccaaaagacttccccttcactattagaatcacctct
gaggttttggagtctaatggttcctcgtcgatggcgtcagcatgtggagggagtttggct
ttgatggatgctggtgtgcctattacatcagctgtggcaggtgtagctattggactcatc
tccaaggcaaacccagagaagccatcggaaatccaggactaccgaatactgactgatatt
ctgggaatcgaggattatctaggagacatggacttcaaactggctggaacaaataagggt
atcaatgccttacaggctgatgtgaagattccaggcttacctctgaaacttgtaatggag
gctattcagcaagccacagttgccaagagggagattttgggcatcatgaacaataccatt
gccaagcccagggctaacagaaaggagaatggtccggttgtcgaaaatgtcagagtccca
gtctccagacgagcacgctttgttgggccagggggctataacctccacagactacaagct
caaacaggtgtgacgataagccaggtggatgaggagaccttctctgtgtttgcacctact
cctggtgccatgaatgaagcccaggagttcatcacagaaatctgcaaagatgatcaagag
cagcagctggagtttggtgctgtttacactgccaccatcatggaaataagggacattggt
gtcatggtgaagctgtatcccaatatgagtgctgttctgctccataactctcagctggac
cataaacggataaaacacccaagtgctattggattagaggttggacagcagattcaggtt
aaatactttgggcgagacccaacagatggaagaatgaggctttcaaggaaagtgttacaa
tctccagcagcaacagttgttaagacactgagtgagaaacagagcatcaccatgggcaca
gggaatggctaa
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