KEGG   Oncorhynchus nerka (sockeye salmon): 115135096
Entry
115135096         CDS       T07952                                 
Symbol
cfap43
Name
(RefSeq) LOW QUALITY PROTEIN: cilia- and flagella-associated protein 43
  KO
K24223  cilia- and flagella-associated protein 43
Organism
one  Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:one00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:one03037]
    115135096 (cfap43)
Cilium and associated proteins [BR:one03037]
 Motile cilia and associated proteins
  Tether/Tether head (T/TH) complex
   115135096 (cfap43)
SSDB
Motif
Pfam: CC_Cfap43 Beta-prop_THOC3 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR5 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_1st Beta-prop_WDR3_1st WDR55 Beta-prop_EML WD40_Prp19 WD40 Beta-prop_WDR3_2nd Beta-prop_HPS5 Beta-prop_ACSF4 CFAP43_N Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_VPS8
Other DBs
NCBI-GeneID: 115135096
NCBI-ProteinID: XP_029525231
LinkDB
Position
LG10:complement(10011965..10026203)
AA seq 1681 aa
MLAVSCLAQLSLFSTFPEMDVLGNLEVRWAQGLTSQNVEFVDKKTACYICGNYIVFLNIE
TKIRSVLQCPGRGIGAFTANGHCRTLAFSNHKLNPSIFVYNYPELILKNELKGTAHVDYT
SLALSDAGPYLACCSSIPDHTITVWNWETGDPICNQPQAGKDITSLVFNPMNWLQICSLS
ASSSLTVWTIEKSDSFHIMKPGVIDLPATDGCLVEREINPSHVPTGILTYFGPQMPNSAI
AGLAEDRADTFVPKERIKTRLRPSTICWTASSELYVGCQEGHLLQVDPDSLAVSVLFNPS
AADDIPGFQQGSFQSLALHKDGLFVSGKENVLRCLKIKGNQVEVTQTWTLEEPATTIIYS
PDYETLLLASSTGRIYRYKRSQCEKVVKVLDVLSGDFVAAASLYTDNNLCVSVRDSGELQ
LWSLDAGFCIGSISLQVKVTSLACCPIAQYVAVGTVSGHVLFIELTREQQPRLVHRVHLY
YTPVDHLLFDQGGNFLITGASDANIYVLNARASRVFEVIGYTGAKGAIVSLSTQYSRDIK
QVKLLALCAGEKDIGRGEGSLLTLLTLPVQELTGAGVCADLRGCLSNNVLQRCTYEVPHA
LSSSALGANKIFGYCQKRKALQRFQLPESTERSSDQDVVQLTPEKEVEGHPMGPASVLLS
PHQSWLASVGQDGLLRIREISSLDRYVQMQCHSCWLGGVRTVSFTSDSQTMITTGLKDGS
MVCTRLRLKMAGVGKANAATQYSQSIAKYQESVITSENPILSRMADWDPEALSPPGSADL
HREEANDKRQIVDVTEQDESSTNLPSATASDSTWLDNKLEAVINEEIQQFSQTKKSLRKN
VKQLRDTIQAMMRENETLPDMEKLEQQEFNLDVDEQKRLQAEGEQEVTRVRNEIELENLA
KCYLRDVLKRECWDSMKVKGQAIKAFHTEHEVKNYPMKERTQQELDELHRVESMRKIERA
DSNLQQEILEKKTKTTTEEEEEEEGREMESASLTGSLSAQYGGSNPYLYNQFNLHIREQK
INQITLLQDVIYKVKTAFNTDFKGVHKQKEQEINRVKDKNRRIMEIMSELDHKMKLWEPS
LSDNERPERALSVEDSEIHFEKYLTPEQRKKEEEKKKEEEQRRQTAKSDNIRERALDEMM
GGVLELKKEDILRVEVPQPEFIVSKPDIQWTEEEKKIYKEYEKKAKELSEEQEKYRKTLE
AEMNKLQTSIMDSTQGFDETLTKLFERKVKSEMVIYQEELKITNLVHSILIEEEVLNRER
ELSLKLEKNRVYKNEIGEELKKHKEDVEMFRETYDNVVAEDKLLDRGFRKEFFDVPGHLV
DQLYKLYKRRPRVQRMRTQADNSTSPFKERPLPGPVAAEGLCQMMEELDAPENIPESLDV
SVWERFCLARRAKVESEQQVKVKALTLAEMQAFLQKRTDEDESARLEMKCLMDDINGLRE
EKMRFRLDIMVQILIKQGQVEVENGDFIADYSDSLLLHKSVVEDLNGTIRALGEQKIASM
VECKDFRKGIIQQEWEHKRMRMQKEDLNNKARDIQMLRVSQELQEYLSETDHDNRISKQV
STLEKTITLQEKTHLKNVLTCKKLIKQLNRQAAMKASKNSALDEQLTNMQVTVAERRHIC
EAIAMEENHESDAEERYQEIIQRKKLVELARAQAEEVATLRAEVERMRMKSFPALAQLKH
N
NT seq 5046 nt   +upstreamnt  +downstreamnt
atgctagctgttagttgtcttgcacagctcagtttattcagtacatttccagaaatggat
gtattgggaaatttagaagtcaggtgggctcagggtttgacaagccaaaatgttgaattt
gttgacaagaaaacagcctgctacatttgtgggaattacatcgttttcctgaatatagag
acgaaaattagaagtgtgctgcagtgtcctggtcgaggtattggtgccttcacagcaaat
ggacattgcaggacacttgcattctccaaccataaactaaatccctccatatttgtgtac
aactaccctgaacttattctgaagaatgaactgaagggaacagcccatgtagactacaca
tctctggcactaagtgatgctggtccttatttggcctgctgctcatcaataccagaccac
accataacagtatggaactgggaaactggggatccaatttgtaaccaaccacaagctgga
aaagacatcacctctttggtgtttaacccaatgaactggctccagatttgctctttgagt
gcatcatcatcccttacagtttggaccattgagaagagtgacagctttcatataatgaaa
ccaggtgtgatagatctccctgcgactgatggctgtctggttgagagggagattaacccc
tctcatgtccccaccggaatactcacctacttcggacctcagatgcccaactcagccatc
gcagggcttgcagaagacagggcagacacctttgtgcccaaagagcgcatcaagaccagg
ctaagacctagcaccatctgctggacagcctcatcagagctctatgtgggctgtcaggaa
ggccacctgctacaggttgacccagactctctggctgtctctgtcctcttcaacccctca
gctgcagatgacattcctgggttccagcagggtagcttccagagcttagccctgcacaag
gatggactatttgtgtcaggaaaggagaatgtgctacgttgcttaaaaattaaggggaac
caagtggaggttacacaaacttggacattggaggaaccagccacaaccataatatattcg
ccagactatgaaacactgctcttagcttccagtacagggcgcatctacaggtataaacga
tcccagtgcgagaaggtggtgaaagtcctggacgttctcagtggagactttgtggcagca
gcttcactgtatactgataataacttatgtgtgtcagtgagggactcgggagagttgcag
ctgtggtctctagatgctggcttctgcatcggctctatatctcttcaagtaaaggtgacc
agtttggcctgctgtccgattgctcaatacgttgccgtgggaacagtgtcggggcatgtc
ctgttcattgagctgaccagggaacagcagcctcgtctggtgcacagggttcacctctac
tacactcctgtggaccacctactttttgatcaaggaggaaacttccttatcactggtgcc
tcggatgcaaatatatatgtgttgaatgcaagggcttccagagtatttgaggtaatcgga
tacacaggtgctaaaggagccatcgtgtccctgtctacccagtatagccgggacattaag
caggtcaaactgctggctctgtgtgctggagagaaggacataggccgaggggagggaagt
ctgcttacactgctcactctgcctgtgcaggagcttacgggggcaggagtgtgtgcagac
ctgagaggatgtctttccaataatgtcttacagcggtgcacatatgaggtccctcacgca
ctcagctcctctgccctgggagccaataagatctttggctactgccaaaagaggaaagct
ctccagagattccagctacctgagagcacagaaaggtcctctgaccaagacgtggtccag
ttgaccccagagaaggaggtggagggtcaccctatgggccccgcctccgtcctcctgtcg
ccccaccagtcttggctggcctcagtgggccaagacggactgctgcgcatccgggagatc
tccagtctggaccggtatgttcagatgcagtgccactcgtgttggctgggaggggtgagg
acagtgtcctttacctcagacagtcagacaatgatcactacaggcctgaaagacggctct
atggtctgtacaagactaaggctgaaaatggcaggtgttggcaaagcgaatgcagctaca
cagtacagccagtctatagccaaataccaggagagtgtgataacatcagagaaccctatt
ctcagtaggatggctgactgggacccagaggccctgtcccctcctgggtcagcagatcta
cacagagaagaggccaatgataagcgacagatagttgatgtgacggaacaggatgagagc
tccaccaacctgccctcagccacagcctcagactccacctggctggacaacaagctggaa
gcggttatcaatgaggagatccagcagttttcacagacaaagaaaagcctgaggaaaaat
gtcaaacaattgcgtgacacaatccaggcaatgatgcgtgagaacgagacgctgcctgac
atggagaagctggagcagcaggagttcaacctggatgtagatgagcaaaagagactgcaa
gccgagggggagcaggaggtcaccagggtccgaaatgagattgagttggagaacctagcc
aagtgctacctgcgtgacgtccttaagagggaatgctgggattccatgaaggtcaaaggg
caagctatcaaggccttccacactgaacacgaggtgaagaactaccccatgaaggaacgg
acacagcaggagctggatgaacttcatagagtggagagtatgaggaagattgaacgggct
gacagtaatctccagcaggagattctagagaagaagaccaagaccacgacggaagaagag
gaggaggaggaaggccgtgagatggagagtgcttccctcacaggtagcctcagtgcccag
tatggaggctcaaacccctacctctacaatcagttcaacctgcacatcagagagcagaag
atcaaccagatcactttgctacaggatgtcatctacaaagtgaagacagcctttaacaca
gactttaagggggtgcacaagcagaaggagcaggagatcaaccgagtgaaagataagaat
cgtcgcatcatggagatcatgtcagagctggaccacaagatgaagctgtgggagcccagt
ctgtctgacaacgagcggccagagagggcactgtctgtggaggactctgagattcatttt
gaaaagtacctcaccccagagcagagaaaaaaagaggaggagaagaagaaagaggaggaa
caaagacggcagacggccaagagtgacaatatcagagagcgagctctggatgaaatgatg
ggtggagtactcgagctaaaaaaagaggacatcttgagagtggaggtgcctcagcctgag
ttcattgtatccaaaccggacattcagtggacagaggaagagaaaaagatctataaagag
tatgagaagaaagccaaagaactgagcgaggaacaggagaagtacagaaagactctggaa
gctgaaatgaataaactacagacgtccatcatggactccactcaggggtttgatgaaacc
ttgaccaagctctttgagaggaaggtgaaatctgagatggttatataccaggaagagctg
aagattacaaatctagttcactccattctgatagaggaggaggttctcaatagagagcga
gaactcagcctcaagctagaaaaaaacagggtctataagaatgagattggagaagagctt
aagaagcacaaagaggatgtagaaatgttccgggagacctacgacaatgttgtggccgag
gacaaacttctcgacaggggattcaggaaggagttctttgatgtcccaggccatcttgtt
gatcagctgtacaagctatacaagcgcagacccagggtccagaggatgaggacccaggca
gacaacagtaccagcccctttaaagagcggcccttaccgggcccagtggcagcagagggt
ctctgtcagatgatggaggagctggacgctccagagaacatacctgaaagcctagacgtg
tctgtgtgggagaggttctgcctggcccgcagagccaaagttgagagtgagcagcaggtg
aaagttaaggctttgactctggctgaaatgcaagcctttctgcagaagaggaccgatgag
gatgagagtgcaagactggaaatgaaatgtctcatggatgacatcaatgggctacgagag
gagaagatgcgtttccgcctggacatcatggttcagatcctaatcaagcagggccaggtg
gaggtggagaacggagacttcattgcggactactctgactctctgctgctccataagagt
gtggtggaggacctcaacgggaccatcagagctctgggagagcagaagatagccagcatg
gtggagtgcaaggacttccgtaaaggcatcatccagcaggagtgggagcacaagaggatg
aggatgcagaaggaggacctgaacaacaaagccagggacatccagatgctgcgcgtctct
caggagctgcaggagtatctcagtgagacggatcatgacaaccgcatatcaaagcaggtt
tcaactctggagaaaaccataacattacaggaaaagactcacctaaagaatgtgctgacc
tgtaagaagttgatcaagcagctgaacagacaggcagcaatgaaggcatcgaagaattct
gctctggatgagcagcttaccaacatgcaagtgactgtggctgagaggagacacatctgt
gaagccatagccatggaggagaaccatgagagtgatgcagaggagaggtaccaggagatc
atccagaggaagaagctggtggagctagccagggcccaggctgaggaggtggctaccctc
agggcagaggtggaacgcatgaggatgaagtccttccccgctctcgctcagctaaaacat
aactga

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