Oncorhynchus nerka (sockeye salmon): 115135141
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Entry
115135141 CDS
T07952
Name
(RefSeq) zinc finger SWIM domain-containing protein 8-like isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115135141
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
115135141
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
115135141
NCBI-ProteinID:
XP_029525341
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All DBs
Position
LG10:complement(13285667..13320737)
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AA seq
1972 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKIKD
GQVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAYWSFPENEEDIRLYSCLANGS
PDEFQRGEQLYRMRAVKDPLQIGFHLSATVVSPQAGQSKGAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMLKRRDSNAAPLLE
ILTEQCLTYEQIIGWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVVLWRLA
VLDPTMSPHRRLELAAQLKQWHLKVIEIVKRGQHRKSLDKLFQGFKPAVESCYFNWEVAY
PLPGITYCSADKKSASFCWARAVQQQRGAKAGLAGDPPEPGGGRSGSSEGGGGDYKGRSP
QQEVAVRPKETIVSKRKGLSAGGGGGVLVRLGGSVSLSLEEGSSKGMYKGAGSSSSTGSK
AKIAQGGKSSSGGSGVVGGKHQAAKRRTSSEDSSLEPDMAELNLDDGSSLALGAEASNTF
DFTPPPPEMLPSPSPLLREPHKYSGGGKGAGNTPKERAFEGKRATLAATLPATESQPAFP
TKENAAVIVEAAIAVVNVEAEMNGNEEVAIAGDARPSTSVVTVTAAATKSPHDGRREPGT
GAVALPNQAPEGAAGDPVGEDDYQAYFLNSANEEGAERVSENNNEEEPDIFAGIKPLEQE
GQMEVLFACAEALHAHGYSNDACRLAVELAGDLLANPPDLKVEQPQTKGKKSKVSTSRQT
QVATNTLVKTSFLLTVLSERLELHNLAFSTGMFSLELQRPPASTKALEVKLAYQESEVVA
LLKKIPLGLVEMTSIRDRAEQLRDGNFCDYRPVLPLMLASFIFDVLCTPVVSPTGSRPPS
RNRNNEMPGDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRREKGDLALALMITYKDDQS
KLKKILDKLLNRESQTHKPQTLSSFYSSKPAASSQRSPSKHTAHTAHGHGGATGGVSKHA
PNATAAAGSSSSSLQAVAAGGAAGQQAGLAGSGVQNNSTAGECVSEAREQADGVQPASCD
QPSEAVPFKPEGTVPSRLALGGRGAYSGRCWGSPVRQKKKHTGMASIDSSAPETTSDSSP
TLSRRPLRGGWAAASWGRGQDSDSISSSSSDSLGSSSSSGSRRAGGGARAKSTDTSRYKG
RRPECHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTQPSASGGHQGPHRNLHL
CAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALNILVECWDGHLTPPEV
ASLADRASRARDPNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQVHVRYSSVLQKT
HRTTHDNVMLEKACMAVEEAAKGGGVYPEVLFEVAHQWYWLYEQTVGGGSGAQREGPGRC
GANGGAGRRPPEMGHGVMDNIGNMDSSGVATVTASVTAAAVVPVISVGSTIYQSHALPGS
AMAHPHTQGLHPYTTIQAHLPTVCTPQYLGHPLQHVPRPTVFPVSGGAYPQCVCVPSQGM
HPAFIGAQYPFSVATGPHPPMAATAVTFPGVPVPSMTQIAVHPYHTETGLPLSTTVAGAA
SFSPFYPVGGVHSGATIQAIQGSSLPGMSSQPVSLVSAPFPSEDEQHSQPISQQGLHYLH
SAYRVGMVALEMLGRRAHNDHPNNFSRSPPYTEDVKWLLGLAARLGVNYVYQFCVGAAKG
VLSPFVLQEIIMEALQRLNPAHIHAHLRTPAFHQLVQRCQQAYLQYIHHRLIHLTPADYD
DFVNIIRSARGAFCLTPVGMMQFNDVLQNLKRGKQTKELWQRISLEMATFSP
NT seq
5919 nt
NT seq
+upstream
nt +downstream
nt
atggaactaatgttcgccgagtgggaagacggagagaggttctccttcgaagattctgac
cggttcgaggaggactcgctctgctccttcatatcagaggctgagagtctgtgtcagaac
tggaggggatggagaaaacagtctgctggaccaaattctcctacagtgaagattaaagat
ggtcaggtcatccctctggtggagctatcagccaagcaggttgcattccacatcccgttt
gaggtggtggagaaggtctaccctcctgtccccgagcagctgcagctccgcatcgcctac
tggagcttcccagagaatgaggaggacatccggctgtactcgtgtctggctaacggcagc
cctgatgagttccagcgaggggagcagctgtacaggatgagggctgtcaaagaccctctg
cagataggtttccacctcagtgccaccgtggtgtcgccccaggctggccaatcaaaaggg
gcgtacaatgtggctgtcatgttcgaccgctgccgcatcacttcctgcagttgcacctgt
ggagccggggccaagtggtgtgcccatgtggtggccctctgcctcttcaggatccacaac
gcgtctgcagtgtgcttgcgagcccccgtgtcagagtccctgtcccggctgcagagggac
cagctgcagaagtttgcccagtacctcatcagtgagcttccccaacagattttgcccaca
gcccagaggcttctggatgagctcctgtcctcccagtccacagccatcaacacagtgtgt
ggggctcccgaccccactgctggcccctcagcctctgatcagagcacctggtatctagat
gagtctacgctcagtgacaacatcaagaagactctgcacaagttctgtggcccctctcct
gttgtcttcagtgacgtcaactccatgtacctgtcatccacggagcctccggcggcggca
gagtgggcatgtctgctgaggccgctgagggggcgggagcccgaggggatctggaacctc
ctttccatcgtcagggagatgctcaagaggagagacagcaacgctgcacccctactagag
atcctcactgagcagtgtctcacttatgaacagatcattggctggtggtacagtgtgcgt
acttcggcatcccacagcagtgccagcgggcacacggggcgcagcaacgggcagtcagag
gtggcagcccacgcctgcgccagcatgtgtgatgagatggtcgtcctgtggaggctggct
gtcctagaccccaccatgagccctcataggcgtttggagctggctgcccagctcaagcag
tggcatctgaaagtgattgagatcgtgaagcgaggacaacaccgcaagtccctggacaaa
ctgttccagggcttcaagccagccgtggagtcctgctacttcaactgggaggtggcctac
ccactgccaggcatcacctactgcagtgcagacaagaagagcgcttccttctgctgggcc
agggcagtgcagcagcagagaggggccaaggctggcctggctggagacccccctgaacct
ggaggagggagatctggcagctctgagggaggtgggggagactacaagggcagaagtccc
caacaagaagtggcggtcaggcccaaagagaccatcgtgagcaagaggaaggggttgtcg
gctgggggcggaggaggggtcctagtgcggctagggggcagtgtgtctctctctctagag
gagggcagtagtaaggggatgtacaaaggcgcaggttcctcctcgtccactgggagcaag
gctaagatagcccaggggggcaagtcgtcctctgggggatcaggagtggtagggggaaaa
caccaagcggccaagcggcgcaccagtagtgaggacagctccctcgagcctgacatggcc
gagctgaacctggatgatggctccagtctggcactgggtgctgaggccagcaacaccttt
gacttcacgcccccaccgcccgagatgctgccctcaccaagcccgctactcagagagcca
cacaaatacagtgggggagggaaaggggctggaaacacgcccaaggagcgtgccttcgag
ggcaaacgggccacccttgctgccaccctgcctgccactgaatcccagcccgccttcccc
accaaagagaacgctgctgtcatcgtggaagcagccattgccgtggtgaatgtggaggcg
gagatgaatggaaatgaggaggtggccatcgctggagatgctcggccttctacctcggtt
gttaccgtgactgcagctgccaccaagtcaccgcatgatggccgccgagaacctggcact
ggagccgtagcactgcccaatcaggccccagagggagcagcaggagaccctgtaggagag
gatgactaccaggcctactttctgaattcagctaatgaggagggggcagagagagtgtcg
gagaacaacaatgaggaggaaccagacatctttgctgggatcaagccactggagcaggag
ggccagatggaggtgttgtttgcgtgtgcagaggccctccacgctcacggctacagcaac
gatgcctgcagactggcagtggagctggccggagacctgctggccaaccctccagacctg
aaggtagagcagccccagaccaagggcaagaagagcaaggtgtccaccagcaggcagacc
caggtggccactaacacgttggttaagacctccttcctgctgacggtgctgagcgagagg
ctggagctccacaacctggccttcagcacgggtatgttctctcttgagctgcagaggccc
ccagcctccaccaaggccctggaggtcaagcttgcttaccaggagtcagaggtggtggct
ctgctgaagaaaatccctctgggcctggtggagatgacgtccatacgggacagggccgag
cagctccgagatgggaacttctgtgactacaggcctgtcctgcccctcatgctggccagc
ttcatatttgatgtgctgtgtaccccagttgtgtcccccacaggttcccgtccgcctagc
cgtaaccggaacaacgagatgcctggagatgaggagctgggctttgaggcggctgtagca
gcactgggtatgaagaccacagtgagcgaggcagagcatcctctgctgtgtgaggggacc
aggagagagaaaggagacttggctctggccctcatgatcacatacaaggatgaccagagc
aagctgaaaaagatcctggacaagctgctgaacagagagagccagacccacaagccccag
accctgagctctttctactccagcaagccagctgccagcagccaaaggagcccgtccaag
cacactgcccacactgctcacggacacggaggtgccacaggaggggtgtccaaacatgcc
cccaacgccacagctgcagccgggtcctcctcctcctccttgcaagcggtggctgctggg
ggggcggcaggacagcaggcaggtctggcgggcagtggggtgcagaacaattccacagcc
ggagagtgtgtcagtgaggccagagagcaagcagatggcgtccagcctgcgtcatgtgac
cagccgagtgaggctgtcccattcaagccagagggcacagtgccgagccgcttggcgctg
ggaggacggggggcatacagcgggcgctgctggggctctcctgtccgccagaagaagaaa
cacacaggcatggcgagtatcgacagcagtgctcctgagaccacctcagacagctccccc
acccttagtcgacgcccgctcagagggggctgggctgcagcttcctgggggaggggccaa
gacagtgacagcatcagcagctcctcttctgattcgttaggctcctcctcatccagtggc
tctcgcagggctggaggcggagctagggcaaagagcacagacaccagcagatataaaggg
cgtcgtcccgagtgccatgcaccacatgtgcccaaccaaccgtcggaggcggcggcccac
ttctatttcgagctggccaagaccgtgctgatcaaggccgggggcaacagctccacctcc
atcttcacccagccctcagccagtggaggccaccaggggccccaccgcaatttgcacctc
tgtgcctttgagatcggcctgtacgccctaggcctgcacaactttgtctcacctaactgg
ctctccaggacctactcctcccacgtctcctggatcacaggccaggccatggagatcggc
agtgctgccctcaacatcctggtggaatgctgggacgggcaccttacccctcccgaggtg
gcatcactggccgacagagcatcacgggcgcgggaccccaacatggttcgcgctgcggct
gagctggccctaagctgcctgccccatgcacacgccctcaaccccaatgagatccagagg
gccctggtgcagtgcaaggaacaggtacatgtccggtactcttcagttctgcagaagaca
catcggactactcatgacaacgtgatgctagagaaagcctgtatggctgtagaggaggca
gccaaggggggtggtgtgtaccctgaggttctgtttgaggtggcccaccagtggtactgg
ctctatgagcagacagtaggcggggggtcaggggcccagcgtgaaggcccgggacgctgt
ggggccaacggtggagctggaaggaggcccccagaaatgggccatggtgtaatggacaac
attggcaacatggattcctccggcgtcgccacggtgacggcctcagtgacagcagcggct
gtggtgcccgtcatctctgtgggctccaccatctaccaatcacacgcccttcccggctcg
gccatggcccacccccacacccagggcctgcacccctacaccaccatccaggcccaccta
cccacagtctgcaccccccagtacctggggcacccactgcagcatgtcccccgccccact
gtattccccgtgtcagggggtgcctacccacagtgtgtctgtgtgccctctcagggaatg
cacccggcctttatcggtgcccagtacccgttctcagtggccactggcccccatccgccc
atggcagcgacagcggtcaccttccccggtgttcccgtgccgtccatgacccagatcgcc
gtccacccctatcacaccgagaccggcctgcctcttagcaccactgtagcaggagccgca
tctttttcccctttctatccagtaggtggcgtccattcaggcgccacaatccaggccatt
cagggttcatctcttcctggaatgtcttctcagcctgtctcattggtcagcgcccccttc
ccatctgaagacgagcagcatagccagccaatcagccagcagggccttcactacctgcac
tcagcatacagagttggcatggtagcattggagatgctgggcaggagggctcacaacgac
caccccaataacttctcccgcagccccccatacacagaggacgtcaagtggctcctgggc
ctggctgcacggctaggggtgaactacgtgtaccagttctgtgtgggtgcggctaagggc
gtgctcagcccctttgtccttcaggagatcatcatggaggctctccagagactgaacccc
gcccacatccatgcccacctccgcacgcctgccttccaccaactggtgcagcgctgccag
caggcctacctacagtacatccaccaccggctgatccacctgaccccggccgactacgac
gactttgtcaacatcatccgcagcgcccgtggggctttctgcctgacacctgtgggcatg
atgcagttcaacgacgtgctgcaaaacctgaagaggggcaagcagaccaaggagctgtgg
cagcgcatctctctggagatggccaccttctccccatga
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