Oncorhynchus nerka (sockeye salmon): 115135276
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Entry
115135276 CDS
T07952
Name
(RefSeq) TATA-binding protein-associated factor 172-like isoform X1
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115135276
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
115135276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
TPR_Trm732_C
Vac14_Fab1_bd
HEAT_MROH2B_C
HEAT_2
TOR1L1_N
HEAT_GCN1_C
HEAT_GCN1
HEAT_EZ
Ltn1_1st
Motif
Other DBs
NCBI-GeneID:
115135276
NCBI-ProteinID:
XP_029525637
LinkDB
All DBs
Position
LG10:20361892..20429524
Genome browser
AA seq
1856 aa
AA seq
DB search
MAVSRLDRLFILLDTGTTPVTRKAAAIQLGDVVKLHPHELNNLLSKVLTYLRSPNWDTRI
AAGQAVEAIVKNIPEWNPSPKPKEESCADFSPEDSSSDRLSFYRFDISRLLKHGASLLGS
AGVEFEVQDDKSGEVDPKERLARQRKLLQRKLGLDMGAAIGMDTMELFNDEDLDTQYTCT
PSGPKAQGQGERGSEPCSSSGNHVPMQAAEIIDSEFRPGMSNRQKNKAKRMAKLVAKQRS
RDMDPNERSNDSFEGEPEEKHRKTSNVVIEQPATEHKVLIDNFPDNSSLLDETQEWPLES
FCDELCNDLFNPSWEIRHGAGTGLKEILKSQGAGGGKLVGSTAEQMARHHQEWLEDVVIR
LLCVFALDRFGDFVSDEVVAPVRETCAQTLGVALRHMTDSGVAMTVDILLKLLTEDQWEV
RHGGLLGIKYGLAVRQDLISALLPRVLPAITQGLQDLDDDVRAVAAAALIPVVDGLVQLL
PNKVPFIVNSLWDALLELDDLTASTNSIMTLLSSLLAYPQVRQCSMQQSLTVLVPRVWPF
LRHTISSVRRAALETLFTLLSKADQSCALWLNQVLQDMLRHIFQSCILESNQEILDLIQK
VWTELLRQAPQQYVVAASCPWMGAWLCLMMQASHIPIDINMLLEVKSRCKEKAGGKPRQG
ALVQVKETVQEYIAGAETVTEDPVTRDYVVTRARLMAAKLLGALCRCICDPQLNSSSQDI
RPAESLGQLLLFHLNSKSALQRIVVAMVLCEWAAVQKVVSAMVQPRLLAILSEQLYYDEI
AIPFTRMQNECKQLIALLADAQIDVSDRLNCSVFTIDQANELVTTIFAESTVGLDTKSKQ
FHPLDSKRQQAQSTVGETSVEWQQLHLRVHMFTACAVVNLQALPDKLNPVVRPLMEAAKR
EENTLVQGYAASFIAKLLQQCATRQPCPNSKIVKNLCSSICMDPLLTPSSACPVPPTQTA
KAGMSEKECMHHMVNKTKGIITLYRHQRAAFVITSKRGPTPKTSKTPTTELPPGSTITTD
TDENKKPFLVQRRGAEFSLTTVARHFGQELTGSLPYLWEFVVGPLRAVVENNQGIDAKLQ
LERGDAAAQELVNSLQVLEVMAGAMAPELKPLLLEHLPHLFTCLQHPYTAVRHMAARCVG
VLSKIATMETMHLFLECVLPWLGCIEDGTKQEGAIEAMACVMEQLDVDIVPYIVLLVVPV
LGRMSDPSDSVRFMATQCFATLIRLLPLEAGIPDPPTMSDDLIRQKARERHFMEQLLDSR
KLENYKIPVPIKAELRKYQQDGVNWLSFLNKYKLHGILCDDMGLGKTLQSICILAGDHYL
RAQEYAKTKAADCTPLPSLVVCPPTLTGHWVDEVGKFCTDEYLNPLHYTGPPTERARLQH
QVKKHNLVVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAIKQLAANFRVIL
SGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAMEA
LHRQVLPFLLRRMKKDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVSVEDTISTA
SIHEEEKPKLKATGHVFQALQYLRKLCNHPGLVLLPQHPEYKRITDQLAAQHSSLRDIQH
SPKLSALKQLLLDCGLGSSGSGEGTEAVVAPHRVLIFCQLKSMLDIVEHDLLKPQLPAVT
YLRLDGSVPTGLRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRD
LQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMSIANTVISQENASLQSMGTDQ
LLNLFTLDKEGKDDKGESSSGGKASIKNVLDGLGDLWDQQQYETEYNLDSFMHSLH
NT seq
5571 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgtcaaggcttgatcgtctgttcatcctgcttgacactggaactacaccggtg
acgaggaaggctgctgccatacagctgggagatgtggtcaaactccacccgcatgagctc
aacaaccttttgtcgaaggtgttgacatacctgagaagtccaaactgggacactcgtatc
gctgcaggtcaggcagtggaggccattgtgaagaatatcccagagtggaacccgtcaccc
aagcccaaagaagagtcgtgtgcagacttctccccagaagactcctcctctgaccggttg
agtttctaccgctttgacatttcccgcctgctcaaacatggtgcttctctgcttggttcc
gccggtgtggagtttgaggtccaggatgacaagtctggtgaggtggaccctaaagagcgt
ctggcccgccagaggaagctgttgcagaggaagctgggactggacatgggggccgccatc
ggcatggacacgatggagctgttcaacgacgaggacctggacacccagtacacctgcacg
ccgagtggccctaaggcccagggacagggagagaggggctctgaaccctgctccagctcc
ggcaatcacgtgcccatgcaggcggcagagataatagactcagagtttcgaccaggcatg
agcaaccgacagaagaacaaggcgaagaggatggccaagctagtggcaaagcaacgatcc
agagacatggatcctaacgagagaagtaatgacagttttgagggggagcctgaggagaag
cacaggaaaactagtaacgtagtcatcgagcaaccggcaacggagcataaagtcttaatc
gataactttccagacaactccagtctcttggacgagacccaggagtggcccctggagagc
ttttgtgatgagctctgtaatgacctcttcaacccctcatgggagattcgtcacggagca
ggcacaggcctcaaggagatcctcaagtctcaaggcgctggaggtgggaagctggtggga
agcactgcagaacagatggcgcggcaccaccaggagtggctggaggatgtggtcatccgg
ttgctctgtgtctttgctctggaccgtttcggagattttgtctctgatgaggtggtggct
ccggttcgagagacctgtgcccagacactgggcgtggccttgcgccacatgactgacagc
ggtgttgccatgacagtagacatcctgctgaagctgctgacggaggaccagtgggaggtc
cggcacgggggtcttctgggcatcaagtatggcctggcagtcagacaggacctgatatcc
gctttgcttccacgggtgctccctgccatcacgcaggggctgcaggacctggatgatgat
gtcagagcggtggcggccgcggccctcatccctgtggtggacgggttagtgcagctactc
cccaacaaggtcccattcatagtgaactccctgtgggacgctctcctggagctggatgac
ctgacagcctccaccaacagtatcatgaccctactgtcctctctgctcgcctaccctcaa
gtccgacagtgcagcatgcagcagtccctaacggtcctcgttcctcgggtctggccattc
cttagacacaccatatcatcagttagacgggccgcactagagacccttttcaccctacta
tccaaagctgaccagagctgtgcattatggctcaaccaggtcctgcaagacatgctccga
cacatcttccagtcctgcatcctggagagcaatcaggagatcctggacctcatccaaaag
gtgtggaccgagctgctgcgccaggcccctcagcagtacgtagtagcagccagctgtccc
tggatgggcgcctggctctgtctgatgatgcaagcctctcacatccccatagacatcaac
atgctgctggaagtcaagtctcgctgcaaggagaaggctggtgggaagcctcgccaggga
gccttggttcaagtgaaggagactgttcaggagtacatcgccggggcagaaaccgtgacc
gaggacccagtgacgcgggactatgtggtgacacgggctcgactcatggccgctaagctg
ttgggggccctgtgtcgatgtatttgcgacccgcagctcaattcatcctcccaggacatc
cggccggctgagtcgctgggccagctgctcctcttccacctcaactccaagtctgccctg
cagcgcatcgttgtggccatggtcctctgtgagtgggccgccgtgcagaaggtggtgtca
gccatggtccagccccgcctgttagccatcctgtcagagcagctgtactacgatgagatc
gccattcccttcacacgcatgcagaacgagtgtaagcagctcatcgccctgctggccgat
gctcagatcgacgtgagcgaccgcctcaactgcagcgtgttcactatcgaccaggccaac
gaactggtgaccaccatcttcgcagagtccaccgtgggcctggatacgaagtccaaacag
tttcatccactggacagcaagcgtcagcaggcccagtccacggtgggcgagaccagtgtg
gagtggcagcagctgcacctgcgcgtccacatgttcaccgcctgcgccgtggtcaacctg
caggcgttaccagacaagctgaacccagtggtgcgtccgctcatggaggcagctaagcgg
gaggagaacaccctggtacagggttacgccgcctccttcatcgccaagctgctgcagcag
tgtgctactaggcagccgtgtcccaattccaagatcgtcaagaacctgtgttcgtcgatc
tgcatggaccccctactcacgccctcctcggcctgccccgtgccccccactcagactgcc
aaagctggcatgtcggagaaagaatgcatgcaccacatggtcaataagaccaagggcatt
atcaccctctaccgccaccagagggcagcatttgtcatcaccagcaagaggggccccacc
cccaaaacctccaagacccccaccactgaactgccacccggcagcaccatcaccacagat
actgatgagaataaaaagccatttctcgttcagagaagaggtgccgagttctctctgacg
acggttgccaggcactttggccaggagctgacggggtcactgccctacctgtgggagttt
gtggtgggacctttgagggccgtggtggagaacaaccaaggcatcgatgcaaagctccag
ttggagaggggtgatgctgcagcccaggagctggtcaactctctgcaggtgctggaggtc
atggctggagccatggcccccgagctcaaacctctgttgttggagcacttgccccacctg
ttcacctgtctgcagcacccgtacacggccgtgcgtcacatggcggcacgctgcgttggt
gtgctcagtaagatcgctaccatggagaccatgcacctgttcctggaatgtgtgctgccc
tggctggggtgcatcgaggatggcactaagcaggagggggccatcgaggccatggcctgt
gtgatggagcagttggatgtggacatcgtgccgtacattgtgctgctggtggtgccggtg
ctgggccgcatgagtgaccccagtgatagcgtccgtttcatggccacgcagtgcttcgcc
accctcatccgcctgctaccactggaggcgggtatcccggatcctcccaccatgtcggat
gatctgattcgccagaaggccagagagcgtcacttcatggaacagctgctggacagcagg
aagttggagaactacaagatccctgtgcccatcaaggctgagctccgcaagtatcagcag
gatggagtgaactggctgtccttcctgaataagtacaagctgcatggtatcctgtgtgac
gacatgggcctgggcaagaccctgcagtccatctgcatcctggctggggaccactacctc
agggcacaggagtatgccaagaccaaggcagcagactgcacccccctgccctctctggtg
gtgtgcccccccaccctgacgggtcactgggtggacgaggtgggcaagttctgcaccgac
gagtacctgaaccccctgcactacacaggaccccccacggagcgagcacggttacagcat
caagtgaaaaagcacaacctagtagtagcctcttacgatgttgtacgaaacgacatagac
ttttttaggaatataaaattcaattactgtatcctcgacgagggccatgtgatcaagaac
gggaagaccaagctctctaaggccattaagcagttggcggccaacttccgagtcatccta
tcaggaacgcctatccagaataatgttctggagctgtggtcgctctttgacttcctcatg
cccggcttcctgggcacagagcgccagtttgctgcccgctacggcaagcccatcctggcc
agccgtgacgccaagagctcgtcgcgcgagcaagaggccggggtgctggccatggaggcg
ctgcatcgccaggtgctgcccttcctcttgaggagaatgaagaaggacgtgctgcaggac
ctgccccccaagatcatccaggactactactgcaacctcagccctctacaggttcagctg
tatgaggactttgccaagtcccgggcaaaggtcagtgtggaggacaccatctctacagcc
tccatccacgaagaggagaagcccaagctgaaggccacgggccacgtgttccaggctctg
cagtacttgcggaagctgtgtaaccacccaggcctggtactgctgccacagcacccagag
tacaagcgcatcacagaccagctggcagcacaacactccagcctccgagacatccagcac
tcgcccaaactctcagctctcaaacagttgttgttagactgtggtctgggcagcagcggc
tcaggggagggcacagaggcggtggtggccccgcacagagtgctgatcttctgtcagctg
aagagcatgctggacatcgtggagcacgacctgctcaagccccagctgcccgccgtcacc
tacctgcgactggacggcagcgtcccgactggcctgcgccactccatcgtctccaggttc
aacaacgacccctccatagacgtgctgctgctcaccacccacgtgggcggtctgggtctg
aacctgaccggcgctgacacggtggtgtttgtggagcacgactggaaccctatgagagac
ctacaggccatggaccgcgcacacaggataggacagaaacgcgtggtgaacgtgtatcgt
ctgatcacgcgtggcaccctggaggagaagatcatgggcctgcagaagttcaagatgagc
atcgccaacactgtcatcagccaggagaacgccagtctgcagagtatgggcaccgaccag
ctcctcaacctcttcaccttggacaaggaagggaaggatgataagggcgagtcgtcctct
ggagggaaagcctccattaagaacgtgctggacggcctgggggacctgtgggaccagcag
cagtacgaaaccgaatacaacctggacagcttcatgcactcgctccactag
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