Oncorhynchus nerka (sockeye salmon): 115135285
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Entry
115135285 CDS
T07952
Symbol
polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
115135285 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115135285 (polr1b)
Enzymes [BR:
one01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
115135285 (polr1b)
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
115135285 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
DUF1186
Motif
Other DBs
NCBI-GeneID:
115135285
NCBI-ProteinID:
XP_029525661
LinkDB
All DBs
Position
LG10:complement(20931743..20949039)
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AA seq
1134 aa
AA seq
DB search
MDFASKWSSLLTSPSLKHLTEAGYGIPKEKQHAAVQDLTKAHIESFDQAVSEGLCRAVQA
IRPLEFMFKNDRISLAFVEATIFKPVVGKGSICRDLRVFPAECRGRRCSYRGKLVADVSW
SVNGVPKGIIKQSLGQLPIMVKSRLCNLHGLPPKELIEHHEEAEEMGGYFIVNGNEKVIR
MLIMPRRNYPIAMSRPKWKNRGQGYTQYGVSMHCVKEEHTAINMNLHYLDNGTVMLNFIY
QKELFFLPLGFALKALVDFTDFQIYQELIKGREANSFYKSCVSEMLRLVMEEGCITRSKV
LNYLGERFRVKMNLPEWYTHEQCANYLLDQCICIHLRSDVEKFYLLCLMTRKLFSFAKQE
CMEENPDSLMCQEVLTPGRLYLMFLKEKMAAWMVSVKLSMDKRAHRLTGGVSSDNLVKMF
NMGSDVTHPFEYLLATGNLTSKTGLGMLQNTGLCVVADKLNFIRYLSHFRCVHRGAAFAK
MRTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAHCEIIAPALPTTTLPALLCSLGVT
PVDGSPGRAYTDCYPVLLDGAMVGWVETDLAPFLADSLRRFKVLKEKKIPPWTEIVLVPQ
TSKASMYPGLYLFTTPCRMVRPVHNLALGQQELIGTFEQLYINVGISEDEIEPGVTTHQE
LFLHSMLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHSFQDRSDNKLYRLQTPQSP
LVRPVMYDHYNMDNYPIGTNAIVAVISYTGYDMEDAMILNKSSWERGFGHGCVYKTELVD
LAQKMKGEDNLVFGVKPGDTKVMDKLDADGLPSIGAVLQHGDPFYSYINLNTGQTFVNFY
KSQESCVVDNIKVCSNDVGSGRFKRVCITVRVPRNPTIGDKFASRHGQKGILSRLWPAED
MPFTESGMTPDILFNPHGFPSRMTIGMLIESMAGKSGALHGLCHDATPFTFSEENSALEH
FGDMLRAAGYNHYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKV
TNQPVGGRNIQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAQVCVDCGSLLSPLL
EKPPPYWSATRHRKTVCLLCGKSDSIDTVSVPYVFRYFVAELAAMNIKIKLDVK
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggattttgcgagtaagtggagtagtttactgacaagtccaagccttaaacatttaaca
gaagcaggctacggcataccgaaggaaaaacaacatgcggctgttcaggacctaacgaag
gctcatattgagtcgtttgaccaagcagtttcagaaggactgtgtcgtgctgtacaggcc
atccgtcccttggagtttatgtttaaaaatgaccggatcagcctggcatttgtggaggcc
accatctttaaaccagtggtgggcaaaggaagcatctgccgggacctgagggtgttccca
gcagagtgcagagggagacgctgctcctaccgggggaagcttgtggcagatgtcagctgg
tccgtgaatggggttcccaaaggcatcatcaagcagtctctgggccagttgcccatcatg
gtgaagtctaggctgtgtaacctacatgggctccctcccaaagagctcattgagcaccat
gaggaggctgaggaaatgggtggttattttattgtgaatgggaacgagaaggttattcgc
atgctgatcatgccaaggaggaactaccctatcgctatgtcaaggccgaagtggaagaac
agaggccagggatacactcagtatggtgtctcaatgcactgtgtgaaggaggagcacacc
gctatcaatatgaacctgcattacctggacaatgggactgtgatgctcaacttcatatac
cagaaagagctcttcttcctccccctgggctttgcactaaaggctctagtggacttcaca
gacttccagatttaccaggagctgatcaaaggtcgtgaggcgaactccttctacaagagc
tgtgtgtctgagatgctgcgactcgtcatggaggagggctgcatcacccgcagcaaggtg
ctcaactacctgggcgagcgcttccgggtcaagatgaacctgccagagtggtacacccat
gaacagtgtgccaactacctgctagaccagtgcatctgtatccacctgaggtcggacgtg
gagaagttctacctgctgtgtctgatgacgcggaagctattctcgtttgccaagcaggag
tgcatggaggagaacccggacagtctgatgtgtcaggaggtgctcacgccaggacggctc
tacctaatgtttctcaaggagaagatggctgcctggatggtgtctgtgaaactgtctatg
gacaagagggcccataggctgactggtggggtgagctctgataatctggtgaagatgttc
aacatgggctctgatgttacccatccctttgagtatctgctagccactgggaatctcact
tcaaagacgggtctgggcatgctccagaacacgggactgtgtgtggtggccgacaagctc
aacttcatccgctacctgtcccacttccgctgcgtgcacagaggggcagcctttgccaag
atgaggaccacctccgtacgtcgtctgctgcccgagtcctggggcttcctgtgccccgtg
cacacccccgacggagagccctgcggcctcatgaaccacatgacggcccactgtgaaatc
atagccccggccctgcccaccaccaccctccctgccctgctctgctccctcggtgtgact
cctgtggatggttctcctggcagggcctacactgactgctatcctgtgctcctggatggt
gccatggtgggttgggtagagactgatctggcccccttcctcgcagactccctccgcagg
ttcaaggtgttgaaggagaagaagatccctccctggactgagatagttctggttccccag
accagcaaggccagcatgtacccaggcctgtacctcttcaccaccccctgccgcatggtg
cggcctgtccacaacctggccctgggccagcaggaactgatcggcacctttgaacagctc
tacatcaacgtgggcatcagtgaggatgagatcgagccgggtgtgaccacccaccaggag
ctcttcctccacagcatgctgagcgtggtggctaacttcatcccttactcggaccacaac
cagagtcccaggaacatgtaccagtgccagatgggtaaacagaccatgggcttccccctc
cactcgttccaggaccgctcggacaacaagctgtaccgccttcagacccctcagagccct
ctggtcaggcctgtcatgtacgaccactacaacatggacaactaccccatcggcaccaac
gccattgtcgctgtgatctcctacactggctacgatatggaggacgccatgatcctgaac
aagtcgtcatgggagaggggctttggtcatggctgtgtttacaagactgagctggtggac
ctggcacagaagatgaagggcgaggacaacctggtgtttggggtcaaacccggtgacacc
aaggtaatggacaaactggacgctgatgggctgccctccatcggcgcagtgctacaacat
ggagaccccttctacagctacatcaacctcaacaccggacagacctttgtcaacttttac
aagagtcaagaaagctgtgtagtagacaacatcaaggtgtgcagcaatgacgtgggctcg
ggccgcttcaagcgcgtctgcatcactgtgcgagtgccccgtaaccccaccatcggggac
aagttcgccagccgccacgggcagaagggtatcctgagccgcctgtggcctgccgaggac
atgcccttcacagagagcgggatgacccccgacattctgttcaaccctcacggcttcccc
tcccgcatgaccatcggcatgctcatcgagagcatggccggcaagtcgggcgccctccac
ggcctgtgccacgacgccactcccttcactttctccgaggagaactcggcactggagcat
tttggggatatgttgcgcgctgccggctacaaccactatggcaccgagcgcctctacagc
ggcctcagcggcctggagctagaggcggacatcttcatcggcgtggtctactaccagagg
ctgcgtcacatggtctccgacaagttccaggtgaggaccactggcgcgcgggacaaggtg
accaaccagccggtgggcggaaggaacatccaggggggcatccgcttcggggagatggag
cgcgacgccctgctggcccacgggacctccttcctgctccacgaccgcctcttcaactgc
tctgatcgctctgtggcacaggtgtgtgtggactgtggtagcctactgtcccctctactg
gagaaaccaccaccctactggtcggccacacgccaccgcaagactgtctgcctcctctgc
ggcaagagtgactccatcgatacggtgtctgtgccatacgtcttccgctactttgttgcc
gagctggcggcgatgaacatcaaaatcaaattggacgtgaagtga
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