Oncorhynchus nerka (sockeye salmon): 115135322
Help
Entry
115135322 CDS
T07952
Symbol
herc4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4 isoform X1
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
115135322 (herc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115135322 (herc4)
Enzymes [BR:
one01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
115135322 (herc4)
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
HECT type E3
115135322 (herc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
Glyco_hydro_129
DUF4980
LAIKA
Motif
Other DBs
NCBI-GeneID:
115135322
NCBI-ProteinID:
XP_029525750
LinkDB
All DBs
Position
LG10:complement(22138256..22168635)
Genome browser
AA seq
1052 aa
AA seq
DB search
MLCWGNASFGQLGLGGIDEEIVVEPRKCDFFHGKQVCDIGCGRRHTTFLLGDGTVYTCGC
NDIGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVFAWGLATDGQLGLAN
FEECVRVPRNIKSLSDVEIAQVACGYRHSHALSRGGQVYSWGQNRYGQLGLGVAGQGIST
PQVIQSLQGIPFIQISAGGAHSFALTFSGAVFGWGRNKFGQLGLNDNNDRYYPAQLKSLR
SQRVIYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNTTNHEINPRKVFELMGNVVTQIS
CGRQHTLAFIPSSGKMDSFGLGGNGQLGTRSTSNRNSPAPVKGPWVAYNGPTPTIADMEQ
GCCVKRIYAGGDQSFAHCYTPQNPLVPDDIRIPDPRRHICTLSADLTQRWLNHYTHGRLP
QEISNEIDLVFSSASCLNGSFLAGSHPDHYNTSSKCSGVDMNMARLLFHRVVQHDYPEIA
QQIAASLEKNLIPRLSSSPPDIEALRLYLTLPECPLFSDPNTYVTLAIPFAKALISLKEA
PLKVLDPGNWWSQFEAPVFQRLVELYKVVVVYLLKMHKVGVPHSEQRVFTCFLDTALKLL
EILHAVNERAGHIIQYDKFYIHELDDLIDIRNDYITWIQQQMYSMAHDSAVTLCKYPFVF
DAQAKTTLLQTDAVIQMQMAVDQAQRQNFSSMFLPVVESVNPCLILIVRRENIVGDTMDV
LRKSKNVDYKKPLKVIFVGEEAVDAGGVRKEFFLLIMRELLDPKYGMFRYYEESRLIWFA
NKTFEDIDLFHLTGVICGLAIYNLTIVDLHFPVALYKKLLKRNPTLDDLKELMPDVGRSL
QQLLDYTEDDVEETFCLNFTVTVENFGATEVLELVPNGMDICVDNSNRPEFVSAYVDYIF
NKSVAALFESFFAGFHKVCGGKVLELFQPNELQAMVIGNTNYDWKELEKSTEYKGEYWAE
NPTIKFFWEVFHDLSLEKKKLFLLFLTGSDRIPILGMKSLKLVIQPTGGGEHYLPVAHTC
FNLLDLPKYSSRETLQNKLLQAIDHNQGFNLA
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgttggggaaatgcttccttcggtcagctaggtttgggcgggatcgatgaggag
attgtggtggagccccggaaatgtgatttctttcatgggaagcaggtgtgtgatatcgga
tgtggccgacggcacaccacatttctactgggagacgggactgtgtacacctgtggctgc
aatgacattgggcagctggggcacgagaagtctcgaaagaaaccagagcaggttgtggca
ctagatgcacagaacattgtggcagtgtcatgtggggaggcccatacactcgcactgaat
gacaaaggacaagtgtttgcatggggcttggccacagatggacagctgggccttgcaaac
ttcgaagaatgtgtacgtgtgcccagaaacatcaagagtttatcagatgtagaaattgct
caggtagcctgtggatatcggcactcccatgctctgtctagaggaggccaagtctattca
tggggacaaaaccgatacggacaactagggctgggagtagctggacaaggcatctctact
ccccaagtcatccagtctttacaggggattcccttcatccagatctcagcagggggtgct
cacagctttgccctcacattctcaggggccgtatttggctgggggcgcaacaagtttggg
caactcggcctcaatgacaacaatgatcggtattatccagcccagctcaagtccctcagg
tcacagagggttatctacatctgctgtggggaggaccacactgccgcacttacaaaggaa
ggaggtgtgtttacatttggagcaggagggtatggccagcttggacataacactacaaac
catgagatcaaccccaggaaggtgtttgagctcatgggaaatgtagtcacacagatatcc
tgtggaagacagcacactctggccttcatcccctcctctggaaagatggattcatttggg
ctgggtgggaacgggcagctcggtacacgctccacatccaacaggaacagccctgcccca
gtcaaaggcccctgggtggcctacaatggcccgacgcccacaatcgcagacatggagcag
ggctgctgtgttaagaggatctatgctggaggggaccagagctttgcccactgttacact
ccccagaaccctctggtgcctgacgacatcagaataccagatcccagaagacacatatgc
accttatctgctgatctcactcagagatggctgaaccattatacacacggaagactccca
caagagatttccaacgagattgatcttgtgttttcctctgcaagttgcctcaatggaagc
tttctggctggcagccatccagatcactacaacacgagcagtaaatgctcaggggtggac
atgaacatggctcgcctcttgtttcacagagtcgttcaacatgactatccagaaattgca
cagcagattgcagccagtctggaaaagaacctgattcccagactaagcagctcccctcca
gacatcgaggcgctgagactctacctcaccctgccagagtgtcctctcttcagcgaccca
aacacatatgtgactctggccattccttttgccaaggcactcatcagtctgaaagaggct
ccactgaaggtgcttgatccaggcaactggtggtctcaattcgaagccccagtcttccag
aggcttgtggagctgtataaggtggtggtggtttacctgctgaagatgcacaaggtggga
gtcccccactcagagcagagggtcttcacctgcttcctggacacggcactcaagcttctg
gagatcctgcacgctgtgaacgaaagagccggacatatcatacagtacgacaaattctac
attcacgagttggatgacctgatagacatccgaaacgactacatcacatggattcaacag
cagatgtactctatggctcatgacagtgcggtcaccctctgtaagtaccccttcgtgttt
gatgcccaggcgaagaccaccctgcttcaaactgatgctgttattcaaatgcagatggca
gtggaccaggcacagcggcaaaacttcagctccatgttccttcccgtggtggagtctgtt
aacccctgcctcatcctcattgtgaggagggagaacatcgtcggggacaccatggatgtc
ctcaggaagtccaagaacgtcgactacaagaaacctctgaaggtgatctttgttggagaa
gaggcggtagatgcagggggtgtgcggaaggagttcttccttctcatcatgagagagctc
ctggaccccaaatatggcatgttccgatactacgaggagtccaggctgatctggtttgca
aacaagacgtttgaggacattgacctgttccacctcaccggggtcatctgtgggctggcc
atctacaacctcaccatcgtggacctccacttcccagtggccctgtacaagaagctgctg
aagaggaaccccacgttggatgatcttaaggagctgatgcctgatgtggggaggagtctg
cagcagttactagactacacagaggatgatgttgaagaaacattctgcttgaacttcacc
gttacagtggaaaactttggcgccacagaggtcttagaactggttccaaatggcatggat
atctgtgttgacaactcaaacaggcctgagtttgtctctgcatacgtggactacatcttc
aataaatcagtggccgcacttttcgagtcctttttcgcaggcttccacaaagtgtgtggt
ggcaaagtcctggagctgttccagcccaacgaactgcaggccatggtcattggcaacacc
aactacgattggaaagagcttgaaaagagcactgagtataaaggagagtattgggctgaa
aatccaaccattaagttcttctgggaggtgttccacgatctctctttggagaagaagaag
ctctttctcttgtttctcacaggaagtgaccgcattcccatcctgggcatgaaaagcctg
aagctggtgatccaacccacgggaggcggggaacactacctgcccgttgcacacacctgc
ttcaacctattggacctgcccaaatacagcagccgggagacgctccaaaacaagcttctc
caagccatagatcacaatcaaggtttcaacctggcctaa
DBGET
integrated database retrieval system
