Oncorhynchus nerka (sockeye salmon): 115135326
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Entry
115135326 CDS
T07952
Symbol
mlh1
Name
(RefSeq) DNA mismatch repair protein Mlh1 isoform X1
KO
K08734
DNA mismatch repair protein MLH1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03430
Mismatch repair
one03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
115135326 (mlh1)
03460 Fanconi anemia pathway
115135326 (mlh1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
one03400
]
115135326 (mlh1)
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
115135326 (mlh1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mlh1_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
115135326
NCBI-ProteinID:
XP_029525759
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Position
LG10:22263252..22278509
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AA seq
725 aa
AA seq
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MSGVIRRLDETVVNRIAAGEVIQRPANAIKELLENCLDAKSTNIQVTVKEGGLKLIQIQD
NGTGIRKEDMEIVCERFTTSKLQTFEDLNAISTYGFRGEALASISHVAHVTITTKTADAK
CAYRATYCDGKLKTQPKPCAGNQGTQITAEDLFYNVSTRRKALKSPSEEYSRIVEVVSRY
AIHNSGKSFAVKKQGETMADVRTLPNASILDNIRVVFGNTVSRELIEVGCEDQKLAYKLK
GHISNANYSVKKCILILFINHRLVESSALKKAIETVYAAYLPKNSHPFLYLSLEIAPHNI
DVNVHPTKHEVHFLHEDCIIESVQKQIESKLLGSNSSRTYFTQTLLPGLSVSTSEGKSSS
NSTGDSERVYAHQMVRTDSRAQKLDAFLQPTSKLAPTPTANPNGQSRGEPVTTNDMEEMD
NAEILEEQAPGATEDGEGTSRNTPADLPRKRPRAGEDEEQENLTAAATTRRRAIKLSSVK
ELRDDITEHTHKGLQEMLQNHSFVGCVNPQWTLIQHHTKLYLLNTTKLSQELFYQILIYD
FGNFGIFRLSEPAPLYDLAMLALDSEESGWSEEDGPKEGLAQYIVDFLKKKSEMLEDYFS
MEIDQEGNLTGLPLLLDKYTPPMEGLPMFILRLATEVNWDNEKDCFRDFSKECSQFYSIR
KQYVLELEPGEEEQDAELNSWRWKVEHLLFKSFRSLFSPPKHFSEDGSVLQIANLPDLYK
VFERC
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgtccggggtgattcggagactcgacgagaccgttgttaatcggattgctgctggagaa
gttatccaacgtcctgcaaatgctatcaaagaattgcttgaaaactgtttagatgccaag
tccaccaacatacaggtgactgtgaaggaggggggtctgaaacttattcagatacaagac
aatggcactggcatcaggaaagaagatatggagatagtatgtgaacggtttacaacaagc
aagctccagacttttgaggacctcaacgccatctcgacctatggtttccgaggagaggca
cttgccagtataagccatgttgcccatgtgaccataacaaccaaaacggctgacgccaag
tgtgcttacagagccacctactgcgatgggaaactaaagacccaacccaaaccctgcgct
ggaaaccaggggacacagatcactgcggaggatctgttttataacgtgtccaccaggagg
aaagcactgaagagccccagtgaggagtactccaggattgtggaggtggtgagcaggtat
gccatacacaactctgggaaaagctttgctgtcaaaaagcaaggcgagaccatggcagac
gtcaggaccctacccaacgcctccatactggataatatccgtgtggtgtttggcaataca
gtcagcagggagctgattgaagtgggctgtgaggatcagaagcttgcctataagctgaag
ggccacatctccaacgccaactactcagtcaagaagtgcatcctcatcctcttcatcaat
catcgtctggttgaatcgagtgccttaaaaaaagccattgagaccgtttatgctgcatac
cttcccaagaactctcacccatttctatatctcagcctggagattgcccctcataacatc
gacgtgaatgtccaccctaccaaacacgaggtgcacttcctccacgaagactgtatcatc
gagagcgttcaaaaacagatagagagcaaactcctgggctccaactcctcacgcacgtac
ttcacacagacattgctgcctgggctgtctgtctccaccagcgaggggaagtcttcctcc
aactccacaggggacagtgagcgggtctacgcccatcagatggtcaggaccgacagtaga
gcccaaaagctggacgcctttctccagccgacgtccaagctggcccctactcccaccgcc
aaccctaatgggcagagcaggggggaacctgtgaccaccaatgacatggaagagatggac
aacgcagagatcctggaggaacaggcgccaggtgccacagaggatggggagggaaccagc
cgaaataccccagctgatctccccaggaagcgtccccgtgccggtgaggacgaggagcag
gagaacctgactgctgcagccacaaccaggagacgagccatcaagctgagcagtgtgaag
gagctgagagatgacatcactgagcacacacacaaaggtcttcaagagatgcttcagaat
cactcgtttgtgggctgtgtcaacccccagtggactctgatccagcaccataccaaactg
taccttctcaacaccaccaaactcagccaggagctattctaccaaattttgatctacgac
ttcggtaactttggcatctttaggttatctgagcctgcgccactctatgacctggccatg
ctggctctggactccgaggagagcggctggtcggaggaggacgggcccaaggagggtctg
gcccaatacatagtcgacttcttgaagaagaaatctgagatgctggaggactacttctcc
atggagatcgaccaggaaggaaatctcaccggtttgccattgctgcttgacaagtacacc
cctcctatggagggtctgcccatgttcatcctacgtttggctactgaggtgaactgggac
aatgagaaggactgtttcagagacttcagcaaggagtgcagccagttctactctatcagg
aaacagtatgtcctggagctggagccgggagaggaggagcaggatgcagagctgaactcg
tggcgttggaaggtggagcatctcctgtttaaatccttccggagcctcttcagtccccct
aaacacttcagtgaggatggcagcgtactccagattgctaatctaccagacctctacaaa
gtatttgagcgatgctaa
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