Oncorhynchus nerka (sockeye salmon): 115135432
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Entry
115135432 CDS
T07952
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115135432
03036 Chromosome and associated proteins [BR:
one03036
]
115135432
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
115135432
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
115135432
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
Tex_central_region
SPT6_acidic
S1
Spt6_S1
S1_RRP5
HHH_9
HHH_3
SH2
Tex_N
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
115135432
NCBI-ProteinID:
XP_029525978
LinkDB
All DBs
Position
LG10:complement(29771813..29835864)
Genome browser
AA seq
1745 aa
AA seq
DB search
MSDFIDSEAEESEEEFEEKDLKPKKTQAFMDDEEEEEELNTEDQDEHGNLRGLIDDDVDE
DEEAEEKKSGGAGSGSDSEDEVRHRRKKRNYDDYLDDDDLDLIEENLGVKVKRRKKKYDR
VKLMDDDEDDEKDQIADEIFHGGDGEGELEEGETVDPPLHRHGERHDEEEEEEGEEESDI
DDFIVDDDGQPITKKRGKFSGYTDAALQEAQEIFGGDFDFAEFDADGAYDQGEEEEEDQD
EEGWDRPKKQTKRRVGRKSIFEIYEPSELESSHMTDQDNEIRSTDMPERLQLRSIPVKPA
EDNELEEEAEWIYRNAFSTPTISMQESTDYLDRGTTTNLSRKGPSTIAKIKEALNFMRNQ
HFEVPFIAFYRKEYVEPELNINDLWKVWQWDEKWCQLKSRKQNLTRLFRRMQSHQYEQIS
ADPDKPLADGIRPLDTADMERLKDVQSIDELSDVYSHFLLYYGRDIPKMQNTAKAASKKK
TLRKIKEVNEDGEEEEVEEEEEQKGPDLKLASRRDMYSICQSAGLDGLAKKFGLTPEQFG
ENLRDSYQRHETEQFPAEPVELAKDYVCSQFNSPEAVLEGTRYMVAMQISREPLVRHVLR
QTFQERAKININPTKKGKKDMDEAHFGYSFKYLKNKPVKELNGEQFLKMCQAEEEGLLTI
DICIDLLGVKGFAGDQTYFDEIKQFYYRDEFSHQVQEWNRQRTLAIERSLTQFLYPQMAK
ELKNKLIAEAKDNIIKSCCRRLYNWLKVAPYRPDQQQAEEEDDDLMDESQGKGIRVLGVA
FADSRDTPVFCSLINGEGEVVDFLRLPYFLKRRNAWREDERDKKLQDIENLKKFLISKKP
HVVAVAGENRDAHMIMEDIKRTVSELEQESSLPAVGVELVDNELAMLYMNSTKSQTDFRD
YPPLLRQAVSVARKIQDPMVEYAQVCSTDEDILCLKLHPLQEHVVKEDLLNALYCEFINR
VNEVGVDVNRAISHPYTQSLVQFVCGLGQRKGSHLLKILKQNNTRLENRTQLVTMCHMGP
KVFINCAGFIKIDTASLGDSTESYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANP
AGALEEILENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRVPYRAPN
TEEVFNLLTKETPETFYIGKLITSVVTGIAHRRPQGESYDQAIRNDSTGLWQCPFCQQDN
FPELSEVWNHFDSGSCPGQAIGVRSRMDNGVQGFIPTKFLSDKVVKHPEERVKVGMTVHC
RIMKIDIEKFNVDLTCRTSDLMDKNNEWKLPKDTYYDFDAETEDTKAEEELKKKQQRTTY
IKRVIAHPSFHNINFKQAEKMMESMDQGDVVIRPSSKGENHLTVTWKVADGIYQHVDVRE
EGKENAFSLGHTLWIYTEEFEDLDEITARYIQPMAAFARDLLGHKYFQDCNGGDKKKMEE
LLIRCKKEKPAFIPYFVSACKDLPGKFILGYQPRGKPRVEFVTISPDGFRYRSQMFPTVN
GLFRWFKDHFQEPVPGITPSSSSRTRTPASVNATPANINIADLTRAVNALPRNMTSQMFS
AIAAVTGQGQNANTTPAQWGSSQYGYTGGSSGGGGGNSSAYHVFATPQQPMSTPVMTPSY
SYTTPSQQTMGTPQYPSSTPLSSHGHTQSSQGQGHSSSNSHHGHSSNTPSSTSSRGRTPQ
QPKSSGSTAVDWAKMAEQWLQDKEAERKKQKTPRMTPRPSPSPMIESTPMSIAGDATPLL
DEMDR
NT seq
5238 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacttcatcgacagcgaggctgaggagtcagaggaggaatttgaggagaaagac
ctgaagcccaaaaagacccaggcgtttatggatgatgaggaagaggaggaagagttaaac
acagaggaccaggatgagcacgggaacctgagggggctcatcgatgatgatgtggatgaa
gatgaagaagcggaagaaaagaagagcggaggagcgggtagcggcagcgactcagaggat
gaagtcagacacaggcgcaaaaaacgcaactatgatgactacctggatgatgatgacctg
gacctcattgaggagaacttgggggtcaaagtcaagaggaggaagaagaagtatgaccgc
gtgaagctgatggatgatgatgaagatgacgaaaaggaccagattgcagacgagatcttc
cacggaggagacggagagggggagctggaggagggagagaccgtcgacccgcccctccat
cgccatggtgaacgccacgatgaagaggaggaagaggaaggagaggaggagtcagatatt
gacgactttattgtggacgacgatggccagcccatcacaaagaagagaggcaagttctca
ggatacacggacgcagccctccaggaggcccaggagatcttcggcggtgactttgacttt
gcagagtttgatgctgacggagcatatgaccagggtgaggaagaggaggaggaccaggac
gaagagggctgggaccggcccaagaagcagacaaagaggagagtggggaggaagagcatc
ttcgagatctatgagcccagcgagctggagagtagtcacatgacagaccaggacaacgag
attcgctccacagacatgccagagaggttacagctgcgctccatcccagtgaagcctgct
gaggataatgagttagaggaagaggcagagtggatctacagaaatgccttctcaaccccc
accatctccatgcaggagagtacagactacctggacagagggaccaccacaaacctcagc
aggaaaggccccagcaccatcgctaagatcaaggaggccctcaacttcatgaggaatcag
cactttgaggttccgttcatcgcattctacaggaaggagtatgtagaaccggagctcaac
atcaacgacctgtggaaggtttggcaatgggacgagaagtggtgccagctgaagagcagg
aagcagaacctgacacgactgttccggaggatgcagtcgcaccagtatgaacagatctct
gccgaccctgacaaacccctggctgatggcatcagacccctggacacggctgatatggag
agactgaaagacgtccagtccatagatgagctgagtgatgtgtacagccacttcctgctg
tactacggcagagacatccccaagatgcaaaacacagccaaggccgccagtaagaagaag
acgctgaggaagatcaaggaggttaacgaggacggtgaggaggaagaggtggaggaggag
gaagagcagaaggggccagacctgaagctggcatctcgtagagacatgtacagcatctgt
cagagcgcagggctcgatggcctggctaagaagtttggtctgactccagagcagtttggg
gagaatctaagagacagctaccagcgccacgagacagagcagttccctgctgagcctgta
gagctggccaaagactacgtctgcagccagtttaacagtcctgaggcggtgttggagggg
actcgttatatggtggccatgcagatttccagggagcctctggtcagacacgtcctcaga
cagaccttccaggagagagccaagatcaatatcaatcccaccaagaaaggaaagaaggat
atggatgaggcccattttggctactccttcaagtacctgaaaaacaagccagtgaaggag
ctgaacggagaacagtttttaaagatgtgccaggctgaggaggagggacttctcaccatt
gacatctgcatcgacctcctaggggtcaaagggtttgcaggtgaccagacgtactttgat
gagatcaagcaattctattacagagatgagttcagccaccaggtgcaggagtggaacaga
cagaggaccctggccatcgaacgctccctcacacagttcctctaccctcagatggccaag
gaactcaagaacaaactcatcgcagaggccaaggacaacatcatcaagtcgtgttgcagg
aggctgtataactggctgaaggtggctccctacagaccagaccagcagcaggcggaggag
gaggatgatgatctgatggatgagagtcaaggaaaaggcatcagagtcctgggagtggcc
tttgcagacagcagagacacgccagtgttctgttctctgatcaacggagagggagaggtg
gtggacttcctccgtctgccttacttcctgaagaggaggaatgcatggagggaggacgag
agggacaaaaagctccaggacattgagaacctaaagaagttcctgatcagtaagaaacct
cacgtggtggctgttgccggggagaatagagatgcccacatgataatggaggacattaag
aggacagtgagtgagttggagcaggagtcttctctgcctgctgtgggagtggagctggtg
gacaatgaactggccatgctttacatgaacagcacgaagtctcagactgacttcagggac
taccctccgctgctgcgccaggccgtgtccgtagccaggaagattcaggatcccatggtg
gagtacgcgcaggtctgcagcacagacgaagacatcctctgcctcaaactacaccctctt
caggagcatgtagtaaaggaggacctgctgaatgctctgtactgtgagtttataaaccgg
gtcaacgaggtgggggtggatgtgaacagggccatatctcacccctacacacagagcctg
gtccagttcgtctgtggcctcggacaaaggaagggatcgcacctgctcaagatcctaaaa
cagaacaacactcgtttggagaacaggactcagctggtcaccatgtgtcacatgggcccc
aaggtcttcatcaactgtgccggcttcatcaagatagacaccgcatcgctcggagacagt
acggagtcatacatcgaggttctggacgggtccagggtacacccggagacgtatgagtgg
gccagaaagatggcggtggacgctctggaatacgacgagtccgcggaggacgccaacccg
gccggtgcgctagaggaaatcctggaaaacccggagcgactcaaagacctggatcttgat
gccttcgctgaggagctggagagacagggttacggtaacaagggcataacgctgtatgat
atccgtgctgagttgagctgcaggtataaggacctgagagttccctacagagctcctaac
accgaggaggtgtttaacctgctcaccaaggagacacctgagaccttctatataggtaag
ctgatcaccagtgtcgtgacaggcattgctcaccggcgcccacaaggggagagttatgac
caggccatcaggaacgactctaccgggctgtggcagtgccccttctgtcaacaggacaac
ttccctgaactcagtgaggtgtggaaccattttgacagtggatcatgtccgggccaggcc
atcggtgtgaggtctcgaatggacaacggtgtccagggcttcatccccaccaagttcctc
agtgacaaggtggtcaagcaccctgaggagagggtcaaggtgggtatgaccgtacactgt
cgcatcatgaagattgacattgagaagttcaacgtggacctgacgtgtcgtacgtctgac
ctgatggataagaacaacgagtggaagcttcctaaggacacctactacgactttgacgca
gagacagaagacactaaggcagaggaggaactcaagaagaaacagcagagaaccacctat
ataaagcgtgtgatcgcccatccatcgtttcacaacatcaacttcaagcaggccgagaag
atgatggagtccatggaccagggagatgttgtaatcaggcccagcagcaagggagagaac
cacctcactgtcacatggaaggtggctgatggtatctaccagcatgtggatgtaagagag
gagggcaaggagaacgccttcagcctgggacacacactctggatctacacagaggagttt
gaggatcttgatgagatcacagctcgttatattcagccaatggcagcgtttgctcgcgac
ctcctgggacataagtacttccaggactgtaacggaggggacaagaagaaaatggaggag
ttgttgattaggtgtaaaaaggaaaagcctgcgttcatcccctattttgtctcagcctgt
aaagacctgccagggaagttcatactggggtaccaacctcgcggaaaaccacgtgttgag
tttgtgactatcagtcctgacgggttccgctaccgctcccagatgttccccacagttaac
ggactgttccgctggttcaaagaccacttccaggaaccggtaccaggcatcacccccagc
agtagtagtcgaacacggacacctgcttctgtcaacgctacaccagctaacatcaacatc
gcagacctgacgcgagctgtcaacgctctcccgcggaacatgacctctcagatgttcagt
gccatcgccgcggtgacagggcagggccagaatgccaacaccacacccgcccagtggggc
tccagccaatacggttacaccgggggtagcagtgggggtgggggaggcaactcctcagcc
tatcacgtatttgcaacgccccagcagccaatgtcgacgcccgtgatgacccccagctac
tcatacaccacccccagccagcaaaccatgggtacgccccagtacccctcctccaccccc
ttgtcctcccacggacacacacagagcagccaagggcagggccacagcagcagcaacagt
caccatggacactcgtccaacacaccttcctccacctcttccagaggacgcacgccacag
cagcctaagtcgagcggcagcacggcggtggactgggccaagatggcggagcagtggctt
caggacaaggaggcggagaggaagaagcagaagacccccaggatgaccccacggccttcc
cccagccccatgatcgagagcaccccaatgtccatcgctggagacgcaacaccccttctg
gacgagatggaccgatag
DBGET
integrated database retrieval system
