Oncorhynchus nerka (sockeye salmon): 115135446
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Entry
115135446 CDS
T07952
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115135446
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115135446
Enzymes [BR:
one01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
115135446
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115135446
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115135446
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
115135446
NCBI-ProteinID:
XP_029525999
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All DBs
Position
LG10:complement(30422752..30436256)
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AA seq
557 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSTEEAANGKKSYWAELEISGKVRSLSTSLWTLTHLTALHIGD
NSLSRIPPDIAKLQNLVYLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
KLQTLGLKGNPLAQEILNLYQEHDGTRKLLNYLLDNLAGTKRVNSEQPPPRSWIVMAEPD
RARTAALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEIMNCNADIISLQEV
ETEQYYNYFLPELKDQGYEGFFSPKSRARTMSECDRKHVDGCAIFYRTEKFSLVQKHTVE
FNQLAMANSEGSEAMLNRVMTKDNIGVAALLEVRKEMMEQSVGKSLHGMEKQLLLVANAH
MHWDPAYSDVKVVQTVMFLSEVKNIVEKATRSLKLSSVSGETNAVPLVLCADLNSLPDSG
VVEYLSSGGVDSTHKDFKELRYIDSLTNFNCNGKNGTSNGRITHSFKLKSAYENGLMPYT
NYTFDFKGIIDYIFYSQPTLNVLGVLGPLDPHWLHENNISGCPHPHIPSDHFSLFAQLEL
LLSYPSSVNGIHLPGRR
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgatccgccagacccaaggcggatgtacacaataatgtccact
gaggaggcagccaatgggaagaagtcatactgggctgagctcgaaattagtggtaaagtg
aggagtctgagcacctcattatggacgttgactcatctcactgctcttcacatcggcgat
aactccctctctcgtatcccgcccgatattgccaaacttcaaaacctggtgtacctggac
ctctcatccaacaagatcaggagcctgcccgccgagcttggcaacatggtgtctctcagg
gaacttcttttaaacaataaccagttgcgggttctaccttttgagcttggaaaactgttt
aagttacaaacactggggttgaaaggaaacccacttgcacaagaaatattgaacctctat
caggagcatgatggcacgaggaaactgctcaactaccttctggacaatctggcagggacc
aaacgagtcaactccgagcaacccccacccagatcatggattgtcatggccgagcctgac
cgggcacgaacagcagccttgttttctgtgatgtgctacaacgtgttgtgtgataagtat
gccacgcgccagctctacggctactgcccctcctgggcccttaactgggagtacaggaag
aagtccatcatgcaggagatcatgaattgcaacgctgacatcattagcctacaggaagtg
gaaacagagcagtactacaactacttcctaccggagctgaaggaccagggttacgagggc
tttttcagccccaagtcccgcgccaggaccatgtctgagtgtgaccgcaagcatgtggac
ggctgcgccatattttacagaaccgaaaagttcagcctggtgcagaaacacacggtggag
ttcaaccagctggctatggcaaactctgagggctcagaggccatgctcaacagagtcatg
accaaggacaacattggtgtggccgctcttctagaggtgcgcaaggagatgatggagcag
tctgtgggaaagtctctgcacggcatggagaaacagctcctcctggtggccaacgcccac
atgcactgggacccggcgtactccgacgtcaaggtggtccagaccgtcatgttcctgtct
gaggtgaaaaacatagtggagaaggccacgcgcagcctcaagctctcctcagtctccggg
gagacaaatgccgtcccactcgtcctgtgtgctgacctcaactcactccccgactctggt
gtggtggagtacctgagctcgggcggagtggacagcacccacaaggacttcaaggagctt
cgctacatcgacagcctgaccaacttcaactgcaacggcaagaatggcacatccaacggc
aggatcacccacagcttcaaactgaagagtgcctacgaaaacggcctgatgccttacacc
aactacaccttcgacttcaagggcatcattgactacatcttctactctcagcctacgctc
aatgtgttgggagttctgggtcctctggatcctcactggctccatgagaacaatatcagc
ggctgtccccacccccacatcccctctgatcacttctccctgtttgcacaactggagctg
ctcctctcctacccatcatcagtcaacggaatccacctgccagggcgcaggtag
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