Oncorhynchus nerka (sockeye salmon): 115135767
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Entry
115135767 CDS
T07952
Symbol
atrx
Name
(RefSeq) transcriptional regulator ATRX isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
115135767 (atrx)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115135767 (atrx)
03036 Chromosome and associated proteins [BR:
one03036
]
115135767 (atrx)
Transcription factors [BR:
one03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
115135767 (atrx)
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
115135767 (atrx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
C5HCH
Motif
Other DBs
NCBI-GeneID:
115135767
NCBI-ProteinID:
XP_029526692
LinkDB
All DBs
Position
LG10:42657950..42703005
Genome browser
AA seq
1966 aa
AA seq
DB search
MSAEMLSIPLGTSKLNVLVTKLHGFLAHAPEEDDDTLVTESPEGIMTKDCVEPHSTDRTS
LETSTDALKQSRCGSRRKPSVVIKHSGLDESGASNESDDCLIVNSNGYPDVTRLPKGTAL
VRPEPVENVRDDFRGTEFHCGKSGHLRRVFPRRRGGGEHLEIVSCTACGQQVNHFQRDSF
NPHPVLKVLICKSCFKYYSSDDISKDCDGMDEQCRWCAEGGNLICCDFCPNAFCKKCIVR
NLGRKELSGILDEESKWYCYVCSPAPLLDLVVACDNILDNLGSLWQDHRKRGRGDGKSGH
CDSHPRHSQNIPTGHWNHSGMDGHVVFNYNTLQIPEEMAKKAKNLVDSTNTVNTTFVKFI
QGGMDFKRQYLKTFQSVLKGLKKSHTALEEALWEEFKEIGLPKDGGNSTFGTDAPQRAQE
GCVEMDIVDKNCLHYLKKIASEHLEENDSDSKGFTDDERPSSSSEMKGVLGTEIIPRRGR
GRPRKNSKPGEDPSNMTKQLVVQLTPVPVEKQPPSGPPELEAEVKKELEEEIKEKVDERK
GDCESIEPATEGEYESAEEGNESLVLELEDEPENRRSPRVKTTPLRRPGEGKTKSTPSGA
DSEGDSDPDTSPNVEVPQEADDGGLGRGIEDSDSDEVPAVLQRAAMARSSDEAGSDDGDH
RSVTKKCLFGLKKNTALSPERVVRKRKVQDRSSDSDSSSDNPDLQKEIKTMSRPRGRPRK
VKREDEPTPSKISPQHRPPGRPRKVKKENESAFSKEGNTQVTKPKSTPRSQQKTKQSPSS
SSQEEGDQDSESSDDSGDQKIKPITEEVALLGSAAFHQSSGDEEQTRSGPSWEAEDDDDP
ENRIAKKMLLAQIKANYSSGEDFSSDEESSQDDESDREEKAQEEGKDQSSDDNGETSSLT
SDSESSKTRHRHCLLRHKLSLDDGNPSDQKTAEENGNEQKVKKSRRTEGETLESQSSDDS
QSEQEESGMSEELSQSENEGNEQKPKSSSTSRVERESVRSYLQKKQQPSYIVLSDSSVDK
SDDDEKDGDNKGTPKGRKKIRRIIIDEHLRSETQRALKEEEDRCRRLAGREQREDFREVI
VIDDEVSQVACPITTKLVLDQDEGTREPLIQVHRNLVTRLKPHQVDGVQFIWDCCCESVK
KANSTPGSGCLLAHCMGLGKTLQVVTFLHTMLQSRCLNFRTALVVCPLNTILNWVNEFDK
WQVNMGADKVKVTELATLKRPQERYIALQKWQKDGGVMIMGYEMYRNLTLGLKVTHRQFK
KTFNSTLVNPGPDFVICDEGHILKNEASNISKAMSAIKTKRRVVLTGTPLQNNLNEYHCM
VNFIKENLLGSIKEFRNRFINPIQNGQCADSTPRDVRIMKNRAHVLHAMLAGCVQRRDYS
ALTKFLPPKHEYVMAVRVTPLQYRLYRYYLDNFTGAGSVVEGAKGKTGTSLFKDFQILSR
IWTHPWCLQLNYISKENKGHFDGKHQGKAESKEKENKGKLRNADEKSNDVEVIMVWNSSS
KGVNVEGDQRAGPLVPVVDAVRASTSFRPDSPAADWYKSMLSDSDATILGHSGKMVLLFE
ILRMAEELDDKLLVFSQSLISLDMIEDFLDLANKAKDNGQSSLYKGDGSWIRNIDYYRID
GSTSATSRKKWAEEFNDATNERGRLFLISTRAGSLGINLVAANRVIIFDASWNPSYDIQS
IFRVYRFGQLKAVFVYRFLAQGTMEEKIYDRQVAKQSLSFRVVDQQQIQRHFTLFELTEL
YMFEPDLLDDPNSEKKSKRITPLLPKDIVLAELLQICKEQIVRYHEHESLLDHKEEEELS
EADRKAAWAEYEAEGAFFLNKAALSSTNVPSPSTSRMANSLSSLYKKTNEQLKNMINASR
DKVSEAIKSLHSLKNLSVDDYVLRLWHDNPSLDEKQVKVLAQTWKTSNDKERERRRALYH
DLLSKQQSLTMCIQTILTSRKTEVTQTATVTNQTPALTDSVKKPMQ
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagagatgctcagcattcctcttggcacgagcaagctcaatgtgttggtgacc
aaactgcatgggttcttggctcatgctccagaggaagatgacgacacactggtgactgaa
agtcctgagggtataatgaccaaggactgtgtggagccacactcaacagaccgaacctcc
cttgagacctcaacagacgccttgaagcagtccagatgtggttccaggagaaaaccttcc
gttgtgattaaacacagtggactggatgaatctggtgcttcaaatgaaagtgatgactgc
ttgattgtcaattcaaacggttatcctgatgtaacaagattgcctaaaggtactgcactg
gtgaggccagagccggtggaaaatgtcagagatgacttccgaggtacagaattccattgt
ggaaaatctggtcatctgagaagagtttttcccaggagacgtggaggaggtgaacacttg
gagattgttagctgtacagcctgtggccagcaagttaaccacttccagagggactccttc
aatccgcatccggtactcaaagtacttatttgcaagtcttgtttcaagtattactcaagt
gatgacatcagcaaggattgtgatggcatggatgaacagtgcagatggtgtgcagagggg
ggaaacctgatctgctgcgacttttgccccaacgccttctgtaagaaatgcattgtgcgt
aatctggggcgaaaggagctgtctggcatcctagatgaggagagtaagtggtactgctac
gtatgcagcccagcgcctcttctagacctggtcgtcgcctgtgacaacattcttgacaac
ctggggagtttgtggcaagaccaccgcaagaggggcagaggtgatggcaaatctggacat
tgtgactcccatcccaggcattctcaaaacattcccacgggtcattggaaccatagtggc
atggatggtcatgtggtgttcaactacaacacccttcaaattccagaggagatggccaaa
aaggcaaaaaaccttgtggactctacaaacactgtaaacacaactttcgtgaaattcatt
caaggtggaatggattttaagcgacaatacttgaagactttccagtcagtactaaagggt
ctaaagaagtcccacacagctctggaggaagccctttgggaggagttcaaagagattggt
ctgccaaaagatgggggaaactccacttttggtactgatgcacctcaacgagcacaagag
ggttgtgtggaaatggacattgttgataaaaattgcctgcattacttaaagaaaattgca
tctgaacatttggaagagaatgattcagactctaaaggctttacggatgatgaaaggcct
tcgtcctcaagtgaaatgaaaggtgtccttggcacagagataataccccgtcgaggtaga
ggcaggccacggaaaaactccaaacccggagaagatccttccaacatgacaaaacaactg
gtggtgcaacttacacctgtccctgttgaaaaacagccaccctctggccccccagagttg
gaggcggaggtaaaaaaggagttggaggaagaaataaaagaaaaagtggatgaacgtaaa
ggggactgtgaatctattgaacctgcaacagaaggggagtatgaatctgctgaggaggga
aacgaatctctggtgctggaactggaagatgaaccagagaatagacgctcacctcgggta
aagaccacgcccttacgcaggccaggtgagggcaagactaagtctaccccctcaggcgct
gacagtgagggtgactccgaccctgataccagccccaatgttgaagtgcctcaagaagct
gatgatggagggcttgggagaggaattgaagactctgactccgatgaggtccctgctgtc
cttcagcgggcagccatggctcgcagttcagacgaagccgggagtgacgatggagaccat
cggagcgtgaccaagaaatgcctcttcggcctgaagaagaacactgccctctctccagaa
agagtggtccgcaaacgcaaggtgcaagaccgctcctctgactccgactcctccagtgac
aatccagacctgcagaaggagatcaagactatgagcaggcccagggggaggcctcggaag
gttaagagagaggatgaacctacccccagcaagattagtccacaacataggcccccgggc
agacctcggaaggtcaagaaagagaatgaatctgcattcagcaaggagggtaatacccag
gtaaccaagcctaaaagcacacctcggtcccagcagaaaacaaagcagtcgccatcctct
tccagtcaagaagagggagaccaggattctgagtctagcgacgacagtggtgaccagaag
attaagcctatcactgaggaggtggccttactggggtcagcagctttccaccagtcatct
ggcgatgaagagcagacccggtctgggccttcttgggaagcagaagatgatgacgatcca
gaaaatagaatcgctaagaaaatgctcttggcccaaatcaaagccaactactcatcgggg
gaggatttctcttcagacgaggagtcatcacaggatgatgaatctgacagggaagagaag
gcgcaggaagaggggaaagatcaaagctcagatgataatggggagacctccagtttgacc
tctgactctgagtccagtaaaactcgtcacagacactgtctgctacgccacaagctcagc
cttgacgatggaaatccaagtgatcagaaaacagctgaagaaaatgggaacgagcagaaa
gtcaagaagtctagaagaaccgaaggtgagacattggagagccagagtagtgatgatagc
caatcagagcaggaagagtctggtatgagtgaagagctgagccaatctgagaatgagggc
aatgaacagaagcccaaaagctcatctacctctagagtcgagagggaatcagtccgtagt
tatctacagaagaagcagcaaccctcatatattgtgctgtctgactccagcgtcgataag
agtgacgatgacgagaaggacggagacaacaaaggtacacctaagggccgcaagaagatc
cgcagaatcatcatagatgagcacctccgctcagagacccagagagccctgaaggaggag
gaggatagatgcagacgcctggcaggcagagagcagagggaggacttcagagaggtgatt
gttattgacgatgaggtgtctcaagtggcctgtccaatcaccactaagctggtcttggat
caggatgaggggaccagggagccactcattcaggtgcacaggaacctggtgaccaggctc
aagcctcaccaggtggatggtgtgcagtttatctgggactgttgttgtgagtcagtgaag
aaggccaattcaacccctggatcaggttgcttactggcccactgcatgggcctagggaag
acactgcaggtggtgacattcctccacacaatgctgcagtcaaggtgcctgaacttcagg
actgccttggtggtgtgtccactcaacactatccttaactgggtcaacgagtttgacaag
tggcaagttaacatgggagctgacaaagtcaaggtgacagagttggcaacactgaagcga
cctcaggagcgttatattgccctgcagaaatggcagaaggatggtggtgttatgatcatg
ggctatgagatgtaccgcaacctcacactaggcctcaaagtcacccacagacaattcaaa
aagacctttaacagcacactggtcaatccaggtccagactttgtgatctgcgatgagggg
cacatccttaagaacgaggcgtccaacatctccaaagctatgagtgccattaagaccaaa
cggagagtggtgctgacaggcaccccactgcagaacaacctcaatgagtaccactgcatg
gtgaacttcatcaaggagaaccttctaggctcaatcaaggagttccggaatcggtttatc
aaccccattcagaatggccagtgtgcagactccacccccagagatgtccgcatcatgaag
aatcgcgcccatgtccttcatgcaatgttggcaggatgtgtacagaggagagactactca
gccttgaccaagttcctgccccctaaacatgagtatgttatggcagtgagggtgaccccc
ctccagtacagactgtatcgctactacctggacaacttcactggagcaggatccgtagtt
gagggagccaagggcaagactggaaccagcctctttaaggacttccagatactcagccga
atctggacgcatccctggtgtctgcagctcaactatatcagtaaagaaaataagggccat
tttgatggaaagcaccaggggaaagctgagagtaaagagaaggagaacaagggaaaattg
cgtaatgctgatgaaaaaagcaatgatgtggaagtgatcatggtgtggaacagttcatca
aagggtgtcaatgtggaaggagaccagcgagcagggccactggttccagtggtcgatgcg
gtgagagcgtccaccagtttcaggcctgacagtccggctgcagactggtacaagtcaatg
ctgagtgattctgacgccaccatcctgggacactcagggaagatggtgctgctgtttgag
attctccgaatggcagaggaactggacgacaaactgttggtgtttagtcaatccttgatc
tcattagacatgattgaagatttcttggacctcgctaacaaagccaaagacaacggacaa
tcatccctatacaaaggtgatggcagctggatcagaaacattgactattaccgtattgat
gggtccactagtgccacatccaggaagaaatgggctgaagagttcaatgatgccaccaat
gagcgaggtcgtctgtttctcatctcaacaagagctgggtcccttgggatcaacctggta
gcagctaacagggtcataatttttgacgcttcgtggaacccctcctatgacatccagagc
atcttcagggtgtaccgttttggccagctgaaggctgtgtttgtctaccgcttcttggca
cagggcaccatggaggagaagatctatgaccggcaggtggccaagcaatctctatcgttc
cgggtggtggaccagcagcagatacagagacacttcactctgtttgaactgacagagctt
tacatgtttgagccagacctgctggatgaccccaactctgagaagaagagcaagcggatc
acacccctgctgcccaaggacatcgtcctggcagagttgctgcagatctgtaaggagcag
attgtccgataccatgaacacgagtccctgctggaccacaaagaggaggaggagctcagt
gaggccgaccgcaaagctgcctgggctgagtacgaggcagagggtgcattcttcttgaat
aaggcagcactcagcagcaccaacgttcccagcccctccacctctcgtatggccaacagt
ctgtcatccctgtacaagaagactaatgagcagctgaagaacatgattaatgccagccgt
gacaaggtcagcgaggccatcaagtccctgcattccttaaaaaacctctccgtggatgac
tatgtgttgcgcttgtggcacgataacccaagtctagatgagaagcaggtgaaagtcctg
gcccagacctggaaaaccagcaatgacaaggagcgggagcgaagacgagccttatatcat
gaccttctctcaaaacaacaatcacttacaatgtgcatccagaccattttgaccagtaga
aaaactgaagtgacacagactgccacggtcaccaatcagacaccagccttgacagactcc
gttaagaaacccatgcagtga
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