Oncorhynchus nerka (sockeye salmon): 115135943
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Entry
115135943 CDS
T07952
Name
(RefSeq) BRCA1-A complex subunit RAP80-like isoform X1
KO
K20775
BRCA1-A complex subunit RAP80
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115135943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
one03400
]
115135943
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
115135943
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAP80_UIM
Motif
Other DBs
NCBI-GeneID:
115135943
NCBI-ProteinID:
XP_029527042
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All DBs
Position
LG10:complement(51167244..51181793)
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AA seq
1144 aa
AA seq
DB search
MPPRKKRENRGTDDCPRKRRRAQEEGNVVISDRDEDEDFRPTSSRGERKREKESRTRPNE
MTEEEMLDLAMRLSKQEASSAALRQRQEEEAVRKAIAESLYADSPTHPHSESLLGSGSPT
QQCQNSPPEGESSIHPPRCKLSYPNHGVADREGARGGGVHVGVAPSDRRRRGKKEGSPLL
DMPDLSQTQKVYSQFSPLSQASTSVPLLSSQEEGSSQRNLFGDRSSKAIESQDYNNSTKS
DSQSQLRIKSPGFPSTTAPQANKPVLCLEKLSQDLLVDCQASGFLLKGHPILTLPTKSQK
SQSYQPKSPTFSNTPVFSKTERGVEPGQSSPSFPKRAMFSNCDSGEEEKEASPTIPKSLV
FFKTDRGKAEEQGSPTSPKSTMFSKTERGPEEKETSGSPVFPRTDQIRDQGPQSCVESVS
ATGDYEDGDRDDAVKSRDASECLPPCPRTTLSLNKRFVPIRKTAGVSDKVVDQEEREGES
SQRTVNRISMPAKLAAEEDLNSEELTLALETQPMQELTSNMALRWSDDDEEENGPEKSAH
SPSPVFPQENDLPQPSNQGLSPNTHDHHSPQHRHSPCLVPKKRTHNFEGAACEEGESQSK
CIRKKFTFKGMYGAPSPSLLRQAAGRSQDEAKGGSTSSHQPLASSSCLSPPTDGQGYGGV
VRYYWGVPFCPRGQNPDAYTQVILSQLEVYEKSLKEAQRGLLRKAGWGEPVLPGPPEKPF
SRRGRLERRRAPRLLEEEERGGKREEELVEVVEDDDEEEGEKRARQLSRWGVEGGEKRGR
QEWKDCQDLFVSSPEQEEKSPSPVFHADTSQLILLQRRLGLRRKEERVAEKQPPDLLEER
EEDENEEKMDDKEGGEKREEEEVDVRGLQVPESQLSDDSTQDLMVTSPAQPQPENQSLPQ
IQTFLSSPRPLEQHEEGMLVFGEEEGRRSSPMGIPAVGEDVRMEEDIPEPAFPRSPNMDC
PMCMRLFPLTEIEMHAAYCDGTTGIMEEEMAEESHSQVSVKARRKRTRRGENIGEEQPSS
SGSGKVVQGEKCFLCQQLFPLKYHEKHVEDCIKNKEFSKAAPRDGQSGVLLSALDQTEHI
YSGTAEAKPCDTTVNNQQSGLIDDLDTAESGGRGDFSAPGFRVSTSPIQSFTPVSEATDC
LIDF
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctcggaaaaagcgagagaacagaggcacggatgattgtcccaggaaacgacga
cgagctcaggaagagggcaatgtcgtcatctcagacagagacgaggatgaagacttcaga
ccgacatcatcaagaggggagcgcaaacgggagaaggagagtagaacacgaccaaacgag
atgacagaggaggagatgctggacctggccatgagactgagtaaacaggaggccagcagc
gctgctctccggcaacgacaggaggaagaggccgtgaggaaggcaatcgctgaaagcctc
tacgcagacagccctactcatccccactcagaatctttgctcgggtcagggagccctaca
caacaatgtcaaaattctcctccagagggagagagcagcatacacccccccaggtgtaaa
ctctcctaccctaaccatggtgtggctgacagggagggagcccgcggtggaggtgttcat
gtaggggtggctccctcagacaggaggaggagggggaagaaggagggaagcccattacta
gatatgcctgacctgtctcagacccagaaggtctactcccagttctcccccctcagccaa
gcttccacctcagtgcctctcctatcctcacaggaagaggggtcttctcagaggaacctt
ttcggagaccgctcatccaaggcaattgaatctcaggactacaacaactccacaaagagt
gactcccagtcccaacttaggatcaagtcccctggtttcccttccactacggctccccaa
gccaacaaacctgtcctgtgcctggagaagcttagccaggacctcctagtagactgtcag
gcctctgggttcctactaaagggtcatcccatcttaacgcttcccacaaagtcccagaaa
tctcaatcttatcagcccaagagccccacattctccaatacccctgtgttttccaaaaca
gagagaggtgtggaaccaggccaaagtagtccctcctttcctaaacgtgccatgttctct
aattgtgattcaggagaggaagaaaaagaggccagtcccaccattcctaaaagcctggtc
tttttcaagactgatagaggaaaggcagaggaacaagggagtccaacttctcctaaaagc
accatgttctctaagactgaaagaggaccagaagagaaagagacctctggaagtccagtc
tttcccagaactgatcagataagggaccagggtccacagagctgtgttgaaagtgtctct
gcaacaggagactatgaggatggagacagagacgatgctgtgaagagcagggatgcctcc
gagtgccttccaccatgccccagaacaaccctgtccctgaacaagagatttgtgcctata
aggaagactgctggagtttcagacaaagttgttgaccaagaggaacgcgagggtgaatcc
tcgcagagaactgtaaacaggattagcatgcctgcaaagttggctgcagaagaagacctt
aattcagaggaacttacattggctttggagactcagccaatgcaggagttaaccagtaat
atggcgctacgctggtcagatgatgacgaagaggaaaatggtcctgaaaagtcagctcac
tcgcccagcccagtcttcccacaggagaatgacctccctcagccaagcaaccagggtctc
tccccaaacacccacgaccaccattccccccaacacagacacagcccctgcctcgtcccc
aagaaacgcactcacaactttgaaggcgccgcgtgcgaggagggggagagccagtccaag
tgcatccggaagaagttcaccttcaagggcatgtatggagccccctctccctctcttctc
agacaggctgcaggtaggagccaggatgaggccaaaggcggaagcacctcttcccaccag
cccctggcctcctccagctgcctctctccccccacagacggccagggttatgggggagtg
gtgcgctactattggggtgtgcctttctgtccacgggggcagaacccagacgcctacaca
caggtgatcctgtcccagctggaggtgtatgagaagagcctgaaggaggcccagaggggt
ctgctgaggaaggcaggctggggggagccagtcctccctgggcccccagagaaacccttc
tccaggaggggacgcctcgagagacgcagggccccacgactcctggaagaagaggagaga
gggggaaaacgtgaggaagagctagtggaggtggtagaagatgatgatgaagaggaggga
gagaagagggcgagacagctgtcacggtggggggtggaagggggagagaagagaggaagg
caggagtggaaggactgccaggatctgtttgtgtcctctcctgaacaagaggaaaaatct
ccctcccctgtatttcatgcagataccagtcagctaattctacttcaacggagacttggc
cttagaagaaaagaggaaagagtagcagaaaaacaaccacctgacttactggaggagagg
gaggaagacgagaatgaagaaaagatggatgataaagagggtggagagaagagggaggag
gaagaagtggatgtcagaggcttacaagttccagagtcccaactcagtgacgacagcact
caagacctcatggtcaccagccctgcacagccccagccagagaaccagtccctgcctcag
atccagacctttctttcatcaccccgtcctctggaacagcatgaagaggggatgttggtg
tttggagaggaggaggggcggaggagtagccctatggggatccctgctgtaggagaggat
gttcggatggaggaggacatcccagagcctgccttccctcggagccccaacatggactgt
cccatgtgcatgcgtctcttccccctgacggagattgagatgcacgctgcctactgtgac
ggtaccaccggtatcatggaggaggaaatggcagaggagagccactcgcaggtttcagtc
aaggctcgtaggaagagaaccagaaggggtgagaacattggagaggagcagcccagctct
tctggctctggcaaggtggtacagggagagaagtgcttcctgtgtcagcaactatttcct
ctcaagtaccatgagaagcatgtagaggactgcatcaagaacaaagagttctccaaggct
gcacccagagacggacagagtggagtcttgctgagtgctctggaccagacagagcatata
tattcagggactgctgaggccaaaccatgtgatactaccgtcaataaccaacaaagtggc
ctgattgatgatctggacacagcagaatctgggggaagaggagacttcagcgccccaggt
ttcagagtgagcacttcgcccatccaatccttcacccctgtctcagaagccacagactgc
cttatcgacttctaa
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