Oncorhynchus nerka (sockeye salmon): 115135957
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Entry
115135957 CDS
T07952
Name
(RefSeq) homeobox protein cut-like 1 isoform X1
KO
K09313
homeobox protein cut-like
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115135957
Transcription factors [BR:
one03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain CUT
115135957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CUT
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
115135957
NCBI-ProteinID:
XP_029527074
LinkDB
All DBs
Position
LG10:51695058..51905389
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AA seq
1542 aa
AA seq
DB search
MAANAGSMFQYWKRLDLQQLQRELNATATALANRQDESEQSRKKLIDQSREFKKNTPEDL
RKQVAPLLKGFQAEIDAVSKRSKESEAAFLNVYKRFIDVPDPVSALEAAQQLQLKVQRMH
DIETENQKLRETLEGYTQEIAEVKNHEVTIKALKEKIEEYEETLKKQAKELGQERREREE
EGQLHNDHAEEESQQQENQESVVSKLEEANRKAQSLQTALEATQAELLELKSKYDEESTA
KGDEIEVVMSDLKRANQRAEVAEREAEALREQLSSSNKSLQLATQIQKAPDLEQALEVLS
RSSLEVELSAKEREVLQLAEDVQRLQASLANIRENSASQISQLEQQLSTKESLLKQLEEK
LREQADYEAIKKELSILKSMEFGSSNFSSAQDSKKPLELLLKSRGLQSESSSLRLNSSEL
SGVRERKVKDSSEGQQRLPATPMGTNLQGSPPPSQLLLRTGSGGSSDTTPVTTANGTHHF
SPTGGGLGGQDFFSPSSLVSAGTAFPLAGKVSLNSLLQRQLMQTFYSKALQDSVSGQALL
FSPAHYPTPNSLSASPLPPHQSLQSQSQHPSAGSPDVNGLAPSPSQSEGAGSVSEGEDMD
TSEIARQVKEQLIKHNIGQRIFGHYVLGLSQGSVSEILARPKPWSKLTIRGKEPFHKMRQ
FLSDEQNILALRSIQGRQRENPGQNLNRVFQEVPKRRTGSEGSSRAGNITTRIRTPESGS
DEAIKSILEQAKRELQVQKADGVDNRQRRQTGYPRGMGNYFAKYAQSLRLVSLPAVDLSQ
TLPSSSIGGGGGSIGSGGSSSSDETIRSILEQARREMEAQQAALEPILKPSSMGPSDLAL
LSPKLLGASTLPASYSPLALSLKKPSIPPSSSPSSLLDFHSAMVKEAGEVVVGEGGVGGG
SLMDGGTKQGRGSWRDQWWNSMHPGGRGVTSSMNDDARSQEDSKEKPPRLAGSSSALAPF
SSSVSISSPDCWKDWPRAESPYSQAGSEPGGGTNTQGPSRADTPQSSPSPLSLSLGSLLT
PAAKPVKPVVAPLTPEQYEVYMYQEVDTAELTQQVKDKLAKNGICQRIFGEKVLGLSQGS
VSDMLSRPKPWSKLTQKGREPFIRMQLWLNGELGQNVLPLQGQPQENTPKTSASCSPAPE
SPLSSAEESVKSLGEQVGGEGCGGGGGLSQFPLREPSEPSESQPGTPLPVPGHSGLSIQE
MVAMSPELDTYVITKKVKEVLTDNNLGQRLFGETILGLTQGSVSDLLARPKPWHKLSLKG
REPFVRMQLWLQDPRNVEKLMDMKRMEKKAYMKRRHSSVSESQTADSGGLSGGDFSQGGS
PQHGLGHHLHQQQPPQQHLKKARVVLAPEEKEALKRAYQQKPYPSPKTIEELASQLNLKT
STVINWFHNYRSRIRRELFIEEIQRGEGGEGVSPSTRAGKASEGESCDGTESDGTVEGTR
PGHEHHPASEGEWGSDHRDEGTTLATGSTAAGTSGHHKGGALDSLFSFPEISHVSSVSVA
ATAAARNPRDNSLRKKKAANLNNIIHRLEKAASKDEPHEWEF
NT seq
4629 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaatgcgggatcgatgtttcaatattggaagcgcttagatttacagcagctg
cagagagaactgaatgccacagccacagcgctggccaacagacaagatgagagcgagcag
tccaggaaaaagctcatcgaccagagccgcgagttcaagaaaaacacaccagaggatctg
cgaaagcaggtagctccattgctaaagggcttccaagcagagatcgacgcagtgagtaaa
agaagtaaggagtcagaggctgccttcctaaacgtgtacaagagattcatcgatgtccca
gaccctgtgtcggccctggaggctgcccagcagctacagctgaaggtccagaggatgcac
gacatcgaaacggagaaccagaagctccgcgagacgctggagggctacacccaggagatc
gctgaggtcaagaaccacgaggtcacaattaaagcacttaaggagaagatagaggagtat
gaagagaccctgaagaaacaggccaaggagctgggccaggagaggagagagagagaggag
gaggggcagcttcacaacgaccatgcagaggaggagagtcaacaacaggagaaccaggag
tctgtggtgtcaaagctggaggaggcaaaccgtaaggcccagtccctacagacagcactt
gaagcaactcaggcagagcttttggaactgaagagcaagtatgacgaagagtcaacagca
aagggcgatgagattgaagtggtgatgtcagacctgaagagagccaatcagagagctgag
gtagcggagagagaagcagaggctcttcgggaacagctgtcgtcctccaacaagtccctc
cagcttgccacacagatccaaaaggcccctgacttggagcaggccctggaggttctgtcg
cgctccagtctggaggtggagctgagcgccaaggagcgggaggtgctgcagctggccgag
gacgtgcagagactgcaggctagcttggccaacatccgggagaattctgcctcgcagata
agccagctggagcagcagctcagcaccaaggagagcttactcaagcaactggaggagaaa
ctgcgagagcaggcagactacgaagccatcaagaaagagctcagtatcctaaagtcaatg
gagtttggctcttcaaacttctcctcagcacaggactctaagaagcctctggagctgttg
ttgaagagtcgaggcctgcagtctgagagctcctccctgcgcctaaacagcagtgaactg
agtggtgtgagggagcgaaaggtcaaagactcatcagagggtcaacagcgtcttcctgcc
acgcccatgggcaccaacttgcagggctcccctcccccctctcaactcctcttgcgcact
ggctcaggtggttcctccgacaccacccctgtcaccaccgccaatggcacgcaccacttc
tcgcccacgggcggtgggctgggtgggcaggacttcttcagcccctcctcgctggtgtcg
gcaggcaccgctttccccctggcgggcaaagtgtcgctcaattccctgttgcagcgccag
ctcatgcagaccttctactccaaagccctgcaggactcagtgtctggccaggccctgctc
ttctcccccgcccactacccaacccctaactccctctcagccagccctctgccaccccat
cagtctttgcagtcgcaatcccagcacccgtcggcgggcagcccagacgttaatggccta
gccccctcgcccagccagtcagagggtgcagggagtgtctcggaaggtgaagacatggac
acgtctgagatagcgcgtcaggtcaaggagcagctgatcaagcacaacattgggcagagg
atctttggccactacgtgctggggttgtcccagggctcggtcagtgagatactggctagg
cccaagccctggagcaagctgaccatcaggggcaaggagcccttccacaagatgaggcag
ttcctatctgacgagcagaacatcttggcactgcgcagcatccaggggaggcagagagag
aacccaggccagaacctgaacagagtgtttcaggaggttccgaagcgaagaaccggctcc
gaaggctcctcgagggcaggtaacatcaccacgcggatccgtactccggagagtgggtca
gacgaggccatcaagtccatcctggagcaggccaagagagagctgcaggtccagaaggct
gatggggtggacaacagacagcgacgacagacaggttacccccgaggcatgggcaactat
ttcgcaaaatatgcacaaagtctcagactcgtctctctccctgcagtggacttgtctcag
acccttccctcgtccagcattggtggtggtggtggtagtatcggctcaggtggatcctcc
agctcagacgagaccatccgctccatcctagagcaggcaaggagggagatggaggcccag
caggccgccctggagcccatcctcaagccgtcctccatgggcccctctgacctggccctg
ctttctcccaaactcctgggcgcttccactctcccggcctcctactcacccctggccctc
tccctcaagaagccctccatccccccatcctcctcgccctcctccctcctggacttccac
tctgccatggtgaaggaggcaggagaggtggtggtgggagaaggcggggtaggaggaggg
tctctaatggacggagggaccaagcaggggcggggctcctggagggaccaatggtggaat
agtatgcaccccggagggcggggagtcacgtctagcatgaacgacgacgcgcggagtcag
gaggacagtaaggagaagcctccccggctagccggctcgtcctcggcgctggcccccttc
tcctcctctgtctccatctcctccccggactgctggaaggactggccccgggccgagtcc
ccatactcccaggccggctccgagcccggcggaggcaccaacacccaggggcccagccgc
gctgacaccccccagagcagcccctctcccctgtccttgagcctggggtccctgttgacc
cccgcagccaaaccagtcaagccggtggtggcgccgctcacgcctgagcagtacgaggtc
tacatgtaccaggaggtggacacggccgagctcacccagcaggtcaaggacaagctggcc
aagaacggcatctgccagcgcatctttggagagaaggtgctgggcctgtctcagggtagt
gttagcgacatgctgtccaggcccaagccctggagtaagctgacccagaagggccgggag
ccctttatccgcatgcagctgtggctcaatggagagctgggccagaacgtcctgccctta
cagggccagccacaagagaacaccccaaagacctcagccagctgcagcccagcaccggag
tcacccctcagctcagccgaggagtcagtgaagagcttgggggagcaggtgggaggagag
ggatgtgggggtggaggagggttgtcccagttccccctcagggagcccagcgagccctct
gagtcccagcccggcacaccgctgcccgtccccggtcactcaggtctcagcatccaggag
atggtggccatgtccccggagctggacacctacgtcatcaccaagaaggtcaaggaagtg
ctgactgataacaacctcggtcagcgtctgtttggggagaccatcttgggtctgacccag
ggctcagtgtctgacctgctggcgaggcccaagccctggcacaagctcagtctgaaggga
cgtgagcccttcgtccgcatgcagctctggcttcaggatccacgcaatgtggagaaactc
atggacatgaaacgcatggagaagaaagcctacatgaagcggcgccacagctcggtgagc
gagagccagactgcggacagtgggggcttgtcagggggagacttcagccaggggggcagc
ccccagcacggcctcggccaccacctgcaccagcaacagcccccccagcagcacctgaag
aaggctcgtgtggtgctggcccccgaggagaaggaggccctgaagagggcctatcagcag
aagccctacccctcgcccaagaccatcgaggagctggcgtcacagctcaacctcaagacc
agcaccgtcatcaactggttccacaactataggtctcgtatccgacgggagctgttcatt
gaggaaatccagcgaggtgagggcggtgagggtgtctccccgtccaccagagcgggcaag
gccagcgagggcgaaagctgcgacggcaccgagtcggatggcacggtggagggcactcgc
cccggccacgagcaccacccagcctcggagggcgagtgggggtccgaccacagggacgag
ggaaccaccttggccaccggcagcaccgccgcaggtaccagtggccaccacaagggcggt
gccctggacagcctgttcagcttccccgagatcagccatgtttcctctgtgtccgtggct
gctaccgccgctgcccgcaacccccgcgacaacagcctgcgcaagaagaaagccgccaac
ctcaataatatcatccaccgtctggagaaggccgcaagtaaagacgagccccatgagtgg
gagttctaa
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integrated database retrieval system
