Oncorhynchus nerka (sockeye salmon): 115136033
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Entry
115136033 CDS
T07952
Name
(RefSeq) HMG box transcription factor BBX-like isoform X1
KO
K21643
HMG box transcription factor BBX
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115136033
Transcription factors [BR:
one03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
115136033
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GFIT
Motif
Pfam:
DUF2028
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
115136033
NCBI-ProteinID:
XP_029527229
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Position
LG10:complement(57465120..57511878)
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AA seq
874 aa
AA seq
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MKGGGRGKEPPVEVSCKRPKRKCLQWHPLLSKKALDFSEEEDEEELEKEPLLVRETRGPK
VPGEEDSSEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLEPKEKQK
YTDMAKEYKDAFMKANPGYKWCPATNKPVKSPCHTVSNTRNKVWSFPSNSPKGCATAKKL
PKTDSTPQLNFAMADPTKMGGLSMLLLAGEHALTSREISSSSSQSGTTDVTKYPDKSSLF
QLAEISSSTRQPSLMDTAGKGKPLSLGDQADMWSGTSQQGKPDVPTANVKSPLFQLAEQI
SSDSSQSTAPGGKQCGQSALFQLAEMCLASEAGKMETQDDTCTPHIKTETVVEEAGDNTH
DLPLSFPPSSSMPTDPSLLLLRGQAAIIKRKKDASTREPPKVVDKDKSPGPGSPKKTLKK
RPSSESELESLFYTIEAVAKGAWGDAGEDMPKKKARTAAVTILVESSSPKKRAKPKAKRP
LKAKEDERNVKDKEDDGRTELPLTVETVVNPASPKIEAKEANISSSTEEPTSPPSPPHIK
HKVGERELEANTEGCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRGSFRSASDEG
GWTDETWAFSQMGPSNFKKLKKSKSKDETAPGLGKLEEEFEKKFNSLPQYSPLTFDKKST
VVTKKKTDISTTPEEQPPKPAKGPSPSQKNTLFHKIVSNYKEKKKKPNTLDKDIAMRSDS
PMLDSAAKANKAKPSPAPCATATLNPEAMGTSPSVPVGSQKRKARKSKITHLVRSADGRV
SPAEEDKARDLTPEQDDKPLSQDTLCNETGCYNASKQEEADRSSAPEDLPAFFSLAALAE
VAAMENIHRGQHVIGDSQKKDMAKTPLLISCADQ
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtggaggaaggggtaaggagcctccggtggaggtgagctgcaagcggcccaag
cgcaagtgtctacaatggcacccgctactctccaagaaggccctggacttttcggaagag
gaggacgaagaagaactagagaaggagccattgttggttagggagacccgggggccgaag
gtgccaggggaagaggactcttcagagcagcgggcccgccggcccatgaatgccttcctg
cttttctgcaagcgccaccgatcgctggtgaggcaggaacaccctcgactggacaaccgc
ggtgccaccaagatcttggctgattggtgggccgtgctggagcccaaagagaaacagaag
tacactgacatggccaaggagtacaaggatgccttcatgaaggctaacccgggctacaag
tggtgccctgccaccaacaagccagtcaagagcccctgccacactgtcagcaacacccgc
aataaagtgtggtccttcccttccaactcccctaagggctgtgccactgccaagaaactg
cccaagactgacagcacaccacagcttaatttcgccatggcagatcccacgaagatgggt
ggcctaagcatgctactgttggctggggagcatgcccttacttccagagagatttcctcc
agctcatcacaatctggaaccacagatgtcactaagtaccctgataaatcctccctattc
caacttgctgagatctcttccagcacgcgtcagccgagtttaatggacacagctggcaaa
gggaagcccttgagtttgggggaccaggctgacatgtggtctggaacctcacagcaggga
aagcctgacgtacccactgccaatgtcaagtcccctctttttcaactggcagagcagatc
tcctctgattcgagccagtcgactgcaccagggggaaagcagtgtggccagtccgctctc
ttccagcttgctgagatgtgcttggcctccgaggcagggaagatggaaacacaggacgat
acctgcaccccacacatcaaaactgagactgtggtagaggaggctggggacaacacccat
gatcttcctctctcctttcccccgtcttcctccatgccgaccgatcctagtctcctgctg
ctcagaggccaagcagccataatcaaaaggaagaaagacgccagcaccagagagccgccc
aaagtggtggacaaagacaagagccctggtcccggctcacccaaaaagaccctcaagaag
cgaccttcatccgagtcggagttggagagcctcttctacactatcgaagccgtggctaaa
ggggcctggggcgatgccggggaggatatgcccaagaagaaggctcgcaccgccgcagtt
accattctggtagagtccagctcacccaaaaagagggccaagcccaaagccaagaggccc
ctgaaggctaaggaagatgagagaaatgtgaaggacaaagaggacgacggacgcacagag
cttccattgaccgtggagacggtggtgaatccagcaagccccaagatagaggctaaggag
gccaatattagcagcagcacagaggagcccacctctcctcccagccccccgcacatcaag
cacaaagtcggggagagggaactggaggccaacacagaggggtgtggctccagaaagtct
gagagaagctgcaagggggcgctgtacaagaccctggtgtcggaagggatgctgacctca
ctgagggccaacgtggacagaggcaaaagaggttcttttcgaagtgcatctgatgaagga
ggctggactgacgagacctgggctttctcacagatgggacccagtaatttcaagaagctt
aagaagtccaaatccaaagacgagaccgcgccaggtttggggaaactagaggaggagttt
gagaagaagttcaacagcctgccgcagtacagccctctgacattcgacaaaaagagcacc
gtcgtcaccaagaagaaaactgacattagcaccacaccggaggaacaacctccgaaacct
gccaagggtccatctccatctcagaaaaatactttattccacaagattgttagcaattac
aaggagaaaaagaagaagcccaatactttggataaagacatagcgatgcgtagtgactcc
cccatgttagactcggctgccaaggccaacaaggcaaagccgagcccagccccctgtgcc
accgccacgctgaacccagaagccatgggaactagccctagcgtgcctgtgggcagccag
aaaaggaaggccaggaagagcaagatcacccacctggtgcgctcggccgacggcagggta
tccccagccgaagaggacaaagccagggacctgaccccggagcaggatgacaagccatta
tcccaagatactttatgcaatgaaacagggtgttacaatgcatccaagcaagaggaagcg
gacaggagcagtgcacctgaagacctgcctgccttctttagcctggctgcccttgcagag
gtggcagccatggagaacattcacagaggccagcatgtgattggtgacagccagaagaag
gacatggccaagacccctttgctcatctcctgcgctgaccaatga
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