Oncorhynchus nerka (sockeye salmon): 115136092
Help
Entry
115136092 CDS
T07952
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04270
Vascular smooth muscle contraction
one04625
C-type lectin receptor signaling pathway
one04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
115136092
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
115136092
09153 Circulatory system
04270 Vascular smooth muscle contraction
115136092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115136092
Membrane trafficking [BR:
one04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
115136092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
P1_N
Motif
Other DBs
NCBI-GeneID:
115136092
NCBI-ProteinID:
XP_029527365
LinkDB
All DBs
Position
LG10:59569884..59684067
Genome browser
AA seq
1542 aa
AA seq
DB search
MSGIQSTLPERFSKKATRTPSILSKDHPPDKKPKSDKNTVPPAHEFDPTDVPVQLSGCVV
AEGNPSEPCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGDRIIKV
NGTLVTHSNHVEVVKLIKSGSYVALTVLGRPPGLAQISLSEGEGGDLSSFLSSPHSPGPT
GGTGERCVTSSTSPQDHITSPLPLWEENNALHSQKVDILQKMLTKEQGDLQAMKEVYSRN
PTAKLLKDIQEAKKHIPLLQSQLSKATGTPQDGSLSHQDGEVEEGGIEAADGEQTPSSQG
ESSSDGPWTNNAVSPSPLPENPCQRETPCHSPKTTPRESLNSCPSPDTEDTADLNCNFQS
SVGSPFSRLNPQIIGAEDDYFDTEQEQINGQCSCFQSIELLKSRPAHLAAFLHHVVSQFD
PAPLLCYLYADLYKQTNSKETRRIFMDFHTFFMDRAANLKVAVPESMTSELERRRPELIP
EELHRPYIQLLQDTLLPDIQRNLEDFRQKRSMGLTLAEGELAKLDTERVRDRVSLERERS
CAEHIISKIEEVLLTSQPTEEEKCTTMQYVILTYMKHLGVKVKEPRSLEPKRVRINFLPK
IKKSIKPEKEGEEKVKKPRFPSILGPPRRPSRVDSASISKAMELNKHRGPQKQLSQPALS
VFEQPEFSAGGIRARSQFSDPGSDAATHPLAYIAPPPHSAPASQGSDPTGRDSDSGLTPS
SALPRLSTDGLHSGDTLDGMVHLTSTHFDFSPCTLDQLQEEERESDRAQEGGTPKPAQRM
DGLGCGDVPSEDDQGNEIECEQDPPNWQALVSREVLAGLTPQEIKRQEVINELFYTERAH
LRMLKVLDNVFCQKLTRDSILPPGDIKHIFTNLEEIVQLHVWITEQMTVIRKKNETSVID
LIGDDLLAWFSDDEEEKIKRAVGTFCSNQPFALELIKTRQKKDQRFTSFMQEAESNRLCR
RLQLKDIIPVEMQRLTKYPLLLESIAKYTEDAEERDKVKRAGECCRTILNYVNQTVKEAE
NKQRLEDYQRRLDLSSLKQSENPMISEFKSLDLTKKKMVHEGPLSWKVNKDKTIELYTLL
LEDILVLLQKQDERLVLKCHSKNLAGTADTKHIFSPIINLNTVLVRSVATDNKSFFVLSM
SDNGAQIYELMAQTVSEQRTWQCLITQSAETMKTKTHIPLLQTDVERDAVEIISTGVPKL
NKDPERTSMGCTQSPEKDVTSLPGLQPTPTSTNPFDGVKSDDEEEEDSPLPDRREEQEEE
EEVEEVDEEEVEAFLDGELADRLPILQERSRLGIAIDDEDPDDAFGMPPSRAEEALRTLA
ALRQVLLNHMTSRAEGSDKDKEKGKEKEQRKGRAPGGRLLRTTSLRGPEDNNSISAPSSV
AAPSTGSESGASEKTEAGREEEAPGSNELPSGDTGFFETSEEYGEPTGTFKAEKRQGIHP
LGSYMVLEGYGASGESSTDNDGQASGGGGGAQWGPDIDLKKLLSSSSQTGGAGPKLRRQV
MTHIRLLQANLQHLKEVETKYNELCQRLTETATDIEENKDNS
NT seq
4629 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcatacagtcaacactccctgaaaggttttccaaaaaagcaaccaggacccct
agcattctcagcaaggaccaccccccagacaagaaacccaagagtgacaaaaacacagtc
ccacctgcgcatgagtttgaccctacagatgtgcctgtgcagctgtctggctgtgtagta
gccgagggaaacccctccgaaccctgtgggcttgtccagcgttgtgtgatcatccagaaa
gatgagaacggcttcgggttgacggtgagcggagacaaccctgtatttgtgcagttggtc
aaagaggatggcgctgccatgcgagcgggtgtccagacgggtgataggatcatcaaggtt
aacgggaccttagtaacacattcaaaccatgtagaagtcgtcaagctaataaaatcgggc
tcctatgtggccctcacagtgctggggaggcccccggggctggcccagatctcgctgtcg
gagggcgaggggggagacctgtcctctttcctctcctcgccccactctcctggaccaaca
gggggaacaggggagcgctgcgtcacctcctccaccagcccccaggaccacatcacctcc
ccgctgcccctctgggaggagaataacgcacttcacagccagaaggtggacatcttacag
aagatgctgaccaaggagcagggggatttacaggctatgaaggaagtgtacagcaggaac
cccacagcgaaactactgaaggacatccaggaggccaagaaacacattcctctgctgcag
agccagctcagcaaagccacaggcacacctcaggatggctccctctcccaccaggacggt
gaggtggaggaggggggcattgaggcagccgatggagagcagaccccctcctcgcaggga
gaaagcagcagcgacgggccctggaccaataacgctgtgtctcccagtcccctccctgag
aatccgtgccaaagagagacgccctgccacagcccaaagaccaccccccgagagagcctc
aactcctgcccctcgcctgacacagaggacacggcggacctgaactgtaacttccagtcc
agtgtgggcagccccttctcccgtctcaacccccagataatcggagcagaggacgactac
tttgacacagagcaggaacagatcaacggtcagtgtagttgttttcagagtatagagctg
ctcaagtctcggcccgctcacttggccgccttcctccatcacgtggtctctcagtttgac
cctgcacctctgctatgctacctttatgctgacctgtacaagcagaccaactccaaagag
accagacggatcttcatggatttccatactttctttatggaccgagcagcgaatctgaaa
gtagctgtgcctgagtctatgacctctgaactagagcggcggagacctgagctgatccca
gaggaactgcacagaccttacatacagctgttacaggacacactgctaccagacatccag
aggaacctagaggacttcaggcagaagcgtagcatgggtctgaccctcgcagaaggggag
ctggctaagctggacacagagagggtgagagaccgcgtgtcgctggagagagaacgctcc
tgtgccgaacacatcatctccaagatagaggaggttctgctgacgtcacagcccacagaa
gaggagaagtgcactactatgcagtatgtcatcctcacctatatgaaacacctgggggtg
aaagtaaaggaaccacgtagcctagagcccaaacgagtccgcatcaacttcctgcccaag
atcaagaagagcatcaaacctgagaaagagggggaggagaaggtgaagaagcctcgcttt
cccagcatcctcggccctcctcggcggcccagccgcgtggactcagcttcaatcagtaag
gccatggagttgaacaagcatcggggcccccagaagcagctctcccagcccgccctcagc
gtcttcgagcaaccagaattctcggcaggcggcatccgtgcccgcagccaattcagcgat
ccaggttctgacgcggccacccaccccttggcctacatcgcaccgcccccccacagtgcc
ccagccagccagggctccgacccgacgggacgcgactctgactcgggactcactccctcc
tctgccctgcccagactgagcaccgacgggctccactcaggcgacaccctggacgggatg
gtccacctaaccagcacccactttgacttcagcccttgtaccctggaccaattacaggag
gaggagcgtgaaagtgacagggctcaagagggaggcacgcccaaaccagcccagaggatg
gacgggttaggctgtggggatgtgccgagtgaggacgaccaggggaacgagattgagtgc
gagcaggaccctcccaactggcaggcgctggttagccgagaggtcctggcgggcctgact
ccacaggagatcaaaagacaggaagtcatcaacgagctcttctacacagagcgagcacac
ctgaggatgttgaaggtgctggataacgtgttctgccagaaactaacccgagacagcatc
ctgcctcctggagacattaaacacatcttcactaacctagaggagattgtccagctacac
gtgtggataacggaacagatgacggtcattcggaagaagaacgagacgtcagtgatagac
ctgataggagacgatctactagcttggttcagtgatgacgaggaggagaagatcaagcgg
gcggtgggtaccttctgcagtaaccagccctttgccctggaactcatcaagacccggcag
aagaaagaccagcgcttcacctcctttatgcaggaggctgagagcaaccgtctgtgtcgc
agactgcagctgaaggacatcattccagtggagatgcagaggctgaccaagtatccactg
ctgctggagagcatagccaagtacacagaggatgcagaggagagggacaaggtgaagagg
gccggggagtgctgcaggacgatcctcaactatgtcaaccagacagtgaaagaggcagag
aacaaacagaggttagaggactaccagagacgcctggacctgtcctctctcaaacagagt
gagaacccaatgatctcagagttcaagagtctagacctgaccaagaagaagatggtgcac
gagggacctctctcctggaaggtcaacaaagacaagaccatcgagctgtacacgctgctc
ctggaggatatcctggtgctgctgcagaagcaggacgagcggttggtcctcaagtgccac
agcaagaacttggcgggcaccgccgacaccaagcacatcttcagccccatcatcaacctc
aacaccgtgctggtgcgctcggtagccaccgacaacaagtccttctttgtgctgtctatg
tccgacaacggagcccagatctacgagctgatggcccagaccgtgtccgagcaaagaacg
tggcagtgtctgataacgcagagcgcagaaaccatgaagacgaaaacacacataccttta
cttcagaccgatgtggagcgagacgcagtagagattatcagcacgggggtgcccaaactg
aacaaagaccctgagcgcacctccatgggatgtacccagtccccagaaaaagacgtcact
tccttgccgggtctgcaacccacacccacatcgaccaacccatttgacggtgtcaaatca
gacgacgaggaagaagaggactcgccactgccagacagaagagaagaacaagaagaggag
gaggaagtggaggaggtagatgaggaggaagttgaagcttttctggatggagagctggca
gacagactgcccatcctccaggaaaggtcacgcctgggcatcgccatcgacgacgaggat
cccgatgacgccttcggcatgccaccctccagagccgaggaggccctaagaaccttggca
gccctgaggcaggtccttctcaaccacatgacgagcagagcagagggcagcgacaaggac
aaagagaaggggaaagaaaaagagcagaggaagggccgagcccctggaggccgcctgctg
aggaccacgtccctgaggggcccagaggacaacaacagtatctcggccccaagcagcgta
gcagcaccctctactggctccgagagcggcgcctcggagaagaccgaggcagggagggag
gaggaggccccggggtccaatgaactaccgtctggggacacaggtttctttgagacttcc
gaggaatacggtgagccaactgggacattcaaggcagaaaagcggcaggggattcaccct
ttaggcagttacatggtcctggagggctacggggcctcgggggagagcagcacggacaat
gacggtcaggcgagtggcggggggggtggggcccaatggggcccggacatcgacctgaag
aagctactctcctcatcctcgcagacagggggtgccggccccaaactcagacgccaggtc
atgacccacatccgcctgctccaggccaacctgcagcacctgaaggaagtggagaccaag
tataatgaactgtgccaaaggctgactgaaacagctactgacatagaggagaacaaagat
aatagttag
DBGET
integrated database retrieval system
