Oncorhynchus nerka (sockeye salmon): 115136673
Help
Entry
115136673 CDS
T07952
Name
(RefSeq) clathrin heavy chain 1-like isoform X1
KO
K04646
clathrin heavy chain
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04142
Lysosome
one04144
Endocytosis
one05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
115136673
04142 Lysosome
115136673
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
115136673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115136673
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
one04147
]
115136673
Membrane trafficking [BR:
one04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
115136673
Exosome [BR:
one04147
]
Exosomal proteins
Proteins found in most exosomes
115136673
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
115136673
NCBI-ProteinID:
XP_029528164
LinkDB
All DBs
Position
LG11:7542168..7568366
Genome browser
AA seq
1687 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPVKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEPTAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNTLFAAGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWMFLLRNVMRISPEQGLQFSQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPAEGPLQTRLLEMNLVHAPQVADAI
LGNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIV
NFSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNTLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLILVVKGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENTF
YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPELWASV
LLESNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPPVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYME
VGQAAAQSGNWEDLVKFLQMARKKSRESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDERMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGNEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAILTMM
SHPSDAWKEGQFKDIVTKVANVELYYKAIQFYLEFKPLLLNDLLIVLSPRLDHTRAVNFF
MKTKQLSLVKPYLRSVQNHNNKGVNEALNNLFITEEDYAALRASIDAYDNFDNITLAQGL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDLELAEELLAWFLE
EDKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDAIKEKVDK
LDASESLRKQEEQNTESQPIVYGTPQLMLTSGPGQAVPPQPGYGGYGYPAAPTGYGQPPQ
PGFGYGM
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaatactacctattcgcttccaggagcacctgcagctccagaacctggggatc
aacccagctaacattggattcagcaccctgactatggagtctgataagttcatctgtata
agagagaaggtgggcgagcaggcacaggttgtcatcattgatatggccgaccccaacact
ccaatccgtaggcccatctctgcagatagcgccatcatgaaccctgctagcaaagttatt
gccctcaaagacgctgcaaaaaccctccagatcttcaacattgagatgaagagcaagatg
aaggctcacaccatgactgatgacgtcactttctggaagtggatctccctcaacactgta
gcactggtcacagacaacgccgtctaccattggagcatggagggagactcccagccagtc
aaagtctttgacagacactccagcctagcaggctgtcaaatcatcaactaccgcactgac
gccaaacagaaatggctgcttctcattgggatttcagcacagcaaaaccgtgtggtggga
gccatgcagctgtactctgtggacaggaaggtgtcccagcccattgagggccacgccgcc
ggcttcgcccagttcaaaatggagggtaatacagaggaatccacactgttctgcttcgct
gtccgagggcaagctggaggaaagttacacataattgaagtgggaaccccaccaacaggc
aatcagccgtttccaaagaaggcagtggacgtgttcttccctcctgaggcccagaatgac
ttccctgtagccatgcagatcagctctaagcaagatgttgtctttcttatcaccaaatat
ggctacatccacctgtatgacctggagactggcacctgtatctacatgaaccggatcagc
ggggagaccatctttgttacagccccacatgaaccaaccgctggcatcattggagtcaac
aggaaaggacaggtgttgtcagtgtgtgtggaggaggagaacatcatcccctacatcacc
aacgtgctccagaacccagacctagccctgcgcatggccgtgcgcaacaacctggctggg
gccgaggagctgttcgccagaaagttcaacaccctgttcgctgcagggaactactctgag
gctgccaaggtggccgcaaacgctcccaagggtatcctgcgtaccccggacaccatccgt
aagttccagagtgtgccggcccagccgggccagacctctccactgctgcagtactttggc
atcctgctggaccagggccagctcaacaagtttgagtctctggagctgtgcaggcccgtc
ctacagcagggacgcaagcagctgctggagaaatggctcaaagaggacaagctggagtgt
tcagaggagctgggggacctggtgaaatcagtggaccccactctggctctcagtgtctac
ctcagggccaacgtgcccaacaaggtcattcagtgcttcgctgagaccggacagttccag
aaaattgtcctctatgccaaaaaggtgggctacactccagactggatgttcctgctcagg
aatgtgatgaggatcagtccagaacaaggcctgcagttctcccagatgctggtgcaggat
gaggagcccctggccgacatcacacagatcgttgacgtgtttatggagtataacctgatc
cagcagtgtacctctttcctcctggatgccctgaagaacaacaggcctgctgaggggcct
ctgcagacacgcctgctggagatgaacctggtccacgccccacaggtggctgatgccatc
ctgggcaaccagatgttcacccactacgaccgtgcccacgttgcccagctgtgtgagaag
gctggcctgctgcagagggctctggagcattacaccgacctgtacgatatcaaacgggct
gtggtgcacacacacctgctcaaccctgagtggctggtgaacttctttggctccctgtca
gtggaggactctttggagtgtcttcgggccatgctgtcggccaacatccgtcagaacctg
cagatctgtgtccaggtggcctctaagtaccacgagcagctctccaccaactccctcact
gagctctttgagtccttcaagagcttcgaaggtctgttctacttcctgggttccatcgtt
aatttcagccaggacccagaggtccacttcaagtacatccaggcagcctgcaagacggga
cagatcaaagaggtggagaggatctgcagagagagcaactgctacgaccccgaacgagtc
aagaacttcctcaaggaagctaagctgactgatcagctccccctgatcatcgtgtgtgac
cgcttcgactttgtccacgacctggtcctctacctgtaccgcaacaccctgcagaaatac
attgagatctatgtgcagaaggtgaaccccagccgtctgccggtggtgattggagggctg
ctggatgtggactgtgctgaggatgtgattaagaacctgatcctggtggtgaaaggacag
ttctccactgatgaactagtggctgaggtggagaagaggaacagactgaagctgcttctg
ccttggctggaggcccgtatccatgagggctgtgaggagccagctacccacaatgccctg
gccaagatctacatcgacagcaacaacaacccagagcgcttcctgcgtgagaacaccttc
tacgacagccgcgtggtgggcaagtactgtgagaagagggacccccacctggcctgcgtt
gcctacgagagaggacagtgtgaccaggagctcattaatgtgtgcaatgagaactctctg
ttcaagagtctgtctcgctacctggttcgccgtaaagaccctgagctgtgggccagcgtg
ctgctggagagtaacccgtttagaagacccctcatcgaccaggttgttcagacggccctg
tctgagacacaggacccagaggaggtgtccgtcacagtcaaggccttcatgactgcagac
ctccccaacgaactcattgagctgctggagaagatcgttctggataactctgtcttcagt
gaacacagaaacctgcagaacttgctgatcctgacagccatcaaggcagaccgtacccgt
gtgatggagtacatcaaccgcctagacaactacgatgcccccgacatcgctaacatcgcc
atcagcaacgagctcttcgaggaggccttcgccatcttcagaaagtttgacgtcaacacc
tccgccgtgcaggttctgattgagcacattgggaacctggaccgggcctacgaatttgct
gagcgctgcaacgagcctccagtgtggagccagctggccaaggctcagctgcagaagggt
ctggtgaaggaggccattgactcctacatcaaggctgatgacccctctgcctacatggag
gtgggccaggctgcagcccagagtggtaactgggaggacctggtgaagttccttcagatg
gcccgtaagaagtcccgtgagtcctacgtggagacagagctcatcttcgccctggccaag
accaaccgcctggctgaactggaggagttcatcaatggacccaacaacgcccacatccaa
caggtgggtgacaggtgttatgatgagaggatgtatgatgcggccaagctgctctacaac
aacgtgtccaacttcgggcggctagcgtccaccttggtccacctgggagagtaccaggcc
gccgtggatggagcccgcaaagccaacagcacccgcacctggaaagaggtgtgctttgcc
tgtgtggatggaaatgagttccgcctggcacagatgtgtggcctgcatattgttgtccat
gctgatgaactggaggagctcatcaactactaccaggaccgtgcttactttgaggagctg
atcaccatgctggaggcagccctgggcctggagcgggctcacatgggcatgttcaccgag
ctggccatcctctactccaagttcaaaccccagaagatgagggagcacctggagctcttc
tggtccagagtcaacattccaaaggtcctgagggctgcagagcaggcccacctgtgggca
gagctggtcttcctctatgacaagtatgaggagtttgataacgccatactcaccatgatg
agccacccctcagacgcctggaaggagggacagttcaaagacattgtcaccaaggtggcc
aatgtggagttatactacaaggctatccagttctacctggagttcaaaccattgttactg
aacgacctgctcatagtgctgtcaccacgactcgaccacacccgcgcagtcaacttcttc
atgaagaccaagcagctgtcactggtcaagccgtacctgcggtcagtgcagaaccacaac
aacaagggtgtcaacgaagcacttaacaacctcttcatcacagaggaagactatgcggcc
ctgcgtgcctccattgatgcctacgacaactttgacaacatcaccctggcccagggcctg
gagaagcatgagctgattgagttcaggaggatcgctgcctacctcttcaaaggcaacaac
cgctggaagcagagcgtggaactctgcaagaaggacaaactctacaaggacgccatgcag
tatgcgtctgagtcgaaagacctggagctggctgaggagttgttggcctggttcctggag
gaggacaagaaggagtgctttgccgcctgcctcttcacctgctacgacctgctgaggcct
gacgtggtgctggagacggcctggaggcacaacatcatggacttctccatgccctacttc
atccaggtcatgagggagtacctctccaaggttgatgcgattaaggaaaaggtcgacaag
cttgacgcctccgagtccctgaggaaacaggaggagcagaacacagagtcccagcccatt
gtttatggcacgccccagctcatgctcacttcaggccctggtcaggctgtgcccccccag
cctggctatggaggctacggctacccagcagcacccaccggctacggccaacctccccag
cctggctttggctatggcatgtga
DBGET
integrated database retrieval system
