Oncorhynchus nerka (sockeye salmon): 115136738
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Entry
115136738 CDS
T07952
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03030
DNA replication
one03420
Nucleotide excision repair
one03430
Mismatch repair
one03440
Homologous recombination
one03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
115136738
03420 Nucleotide excision repair
115136738
03430 Mismatch repair
115136738
03440 Homologous recombination
115136738
03460 Fanconi anemia pathway
115136738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115136738
03032 DNA replication proteins [BR:
one03032
]
115136738
03400 DNA repair and recombination proteins [BR:
one03400
]
115136738
Transcription factors [BR:
one03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
115136738
DNA replication proteins [BR:
one03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
115136738
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
115136738
MMR (mismatch excision repair)
115136738
DSBR (double strand breaks repair)
HR (homologous recombination)
115136738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
115136738
NCBI-ProteinID:
XP_029528341
LinkDB
All DBs
Position
LG11:complement(9737529..9776807)
Genome browser
AA seq
604 aa
AA seq
DB search
MLTKGAIEALTKCSNDLQNPILQLVNIRKIDGGSGPARFRLMMSDGQHSMSSFMLSTQLN
PMAEDNRLAPNCICQLKRSVTNVLKDGRRVVVILDMEVVKSADEVAGKIGEPQPYVEGQS
KTPQSAPNPSVHPLQPQNGIDGSMNKGPSRAFGGKKGMPPSAMPSTPGGSSKVVPIASLN
PYQSKWTIRARVTNKSGIRTWSNSRGDGKLFSMEIVDESGEIRVTAFTQEVDKFYSIIET
GKVFYISKGSLKIANKQYSSLKNDYEMTLNGESTIIPCEDTQDVPMVQCNFVSIADLQAR
EKDTILDVIGVCKSVSDVTRLNTKNNREVSKRTLNLMDQSGKLVEVTLWGEEAETFDGSG
QPILAIKGAKLSDYGGRSLSASFSSTVMVNPDIPEAYKLRGWYDKEGHSMDGQSLTDART
GGGGGNTNWKTLADIKTEHLGHGDKADYFSCIATIVYIRKENCLYQACPSQDCNKKVVDQ
QNGMFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKDS
NEAAFEEIFQQANFHTFVFRNRVKLETYNDESRIKATVMEVKPVDHKEYSKRLIMNIRKM
ASAQ
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgctgacaaagggagcgatcgaggccctaaccaaatgctctaatgatttacaaaacccc
atacttcaattagtgaacatccgtaaaattgatggaggcagtggaccagcccgctttcgt
ctgatgatgagtgatggacagcactcaatgtcttcgttcatgctctccacccagctcaac
ccaatggctgaggacaaccgactagccccaaactgtatctgtcagctgaagaggagcgtg
accaatgtcttaaaggatggacggcgtgttgtggtcatactggacatggaggtggtgaag
tctgctgatgaggtggctgggaagatcggagagccccaaccttacgtggaaggtcagagt
aaaaccccacagtcagcccccaatccctcagtccaccccctgcaaccccagaatggaatt
gatggctccatgaacaaaggtcccagcagagcgtttggggggaagaagggcatgcctccg
tctgccatgcccagcactcctgggggatcctccaaagttgtgcccatcgccagcctcaac
ccctaccagtcaaagtggaccatccgagcccgtgtcaccaacaagagcggcatccgcacc
tggagcaactctcgtggggacggcaagctgttctctatggagattgtggatgagagtgga
gagatcagagtgactgcctttacccaggaggtggacaaattctacagcatcatcgagact
ggcaaggtgttctacatctccaagggatccctgaagatcgccaacaagcagtactcatcc
ctgaagaatgactatgagatgaccctgaatggagagtccaccatcattccctgtgaagac
acccaggacgtacccatggtgcagtgcaactttgtctccatcgccgacctgcaggcccga
gaaaaggacaccattttggatgtgattggagtgtgcaagagcgtgtccgacgtgacccgc
ctcaacaccaagaacaaccgcgaggtctccaagaggacgctcaacctgatggaccagtct
ggtaaactggtggaggtcaccctgtggggagaggaggcagagacctttgatggctctggg
cagcccatcctggccatcaaaggggccaaactgtcggactatgggggcagatctctatct
gcttcgttcagcagcaccgtcatggtcaaccccgacatccctgaggcatacaagctgcgg
ggctggtatgacaaggagggccactctatggatggccagtctctgacggatgcgaggaca
ggtggaggaggagggaacaccaactggaagaccctggcagacatcaagacggagcacctt
ggacacggagacaaggcagactacttcagctgcatcgccaccatagtgtacatccgtaag
gagaactgtctgtaccaggcgtgccctagtcaggactgcaataagaaggtggtggaccag
cagaatggcatgttccgctgtgagaagtgtgacaaagagttccccaacttcaagtaccga
ctcatcctctctgccaacatagcagactacggggacaaccagtgggtgacctgcttccag
gagagtgctgaagccatcctgggacagaacgctgcttacctagggcagctcaaggactcg
aatgaagctgccttcgaggagatctttcagcaggccaacttccacacgtttgttttccgt
aacagagtcaagctggagacctacaatgacgagtcccggatcaaggccacggtgatggag
gtgaaacctgtggaccacaaggagtacagcaagagactcatcatgaacatcaggaagatg
gcttccgcccaataa
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