Oncorhynchus nerka (sockeye salmon): 115136763
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Entry
115136763 CDS
T07952
Name
(RefSeq) transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115136763
03036 Chromosome and associated proteins [BR:
one03036
]
115136763
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
115136763
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
115136763
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
Tex_central_region
SPT6_acidic
Spt6_S1
S1
S1_RRP5
HHH_3
HHH_9
SH2
Tex_N
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
115136763
NCBI-ProteinID:
XP_029528380
LinkDB
All DBs
Position
LG11:complement(10599028..10631232)
Genome browser
AA seq
1738 aa
AA seq
DB search
MDFIEREAEESEEEFGCPEDTEKKALKHAAANDDEEEEEENTEDQDADGNLCGLIDDGVE
EGEGEEEDEEEGNKDKEGDSDSGEEIGHRKRKRSFDDRLDDDDIDLIEENLGVKVKRQKF
RRLRDMSDDEDEEGDEDVREAHEKDMIADEIFMGTGADEGEALDVPLHPGEDEEEDDEES
DIDDFIVDDDGQPLKKPKWRKKLPGYTDAALQEAQEIFGGDFDFAEFDTEAYEDAEEEEE
DADEESWDRPKKQAKKRVGRRSIFEIYEPSELESSHMTDQDNEIRSTDMPERFQLRSTRV
KPAEDDELEQEAEWIYRNAFSTLTISMQENADYLDRGPTTTFSRKGPSTIQKIKEALNFM
RNQHFEVPFIAFYRKEYVEPELNINDLWKVWQWDEKWTQLKTRKQNLRRLFQKMQGYQFE
QISADPDKPLADGIRPLDTSDLERLKDVQSSDELGDVYNHFLLYYGRDIPKMQNAARSSK
KKMKKIKVDEDGNEQEVEEEEEEEEEQSKGPDLKLASRRDMYSICQCAGLDGLAKKFGLT
PEQFGENLRDSYQRHETEQFPAEPMELAKDYICSQFSTAEAVLEGTRYMVAMQIAREPLV
RHVLRQTFQERAKINIKPTKKGKKDVDEAHYGYSFKYLKNKPVKELNGDQFLKMFQAEEE
GLLTINICIDLIGVKGYGGDQAYYEEIKQFYYRDEFSHQVQEWNRQRTLAIERSLKQFLY
PQMAKELKNKLIAEAKENIIKACSRKLYNWLKVAPYRPDQQVEEEDEELMSEAHGKGIRV
LGVAFSSSRDTPVFCALVNGDGEVGDFLRLPYFLKRRNAWREDEREKKIHDIETLKKFLN
SKKPHIIAIAGENRDAQMVIEDIKRTASELEQESSFPTIGVELVDNELAMLYMNSKKSEA
DFRDYPPLLRQAVSVARKIQDPLVEYAQVCSSDEDILCLKLHPLQEHVVKEDLLNALYCE
FINRVNEVGVDVNRAMAHPYTQSLVQYVCGLGPRKGSHLLRILKQNNTRLENRTQLVTMC
HMGPKVFINCAGFIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAE
DANPAGALEEILENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRSTY
RGPNTEEIFNLLTKETPETFYIGKLITSVVTGIAHRRPQGESYDQAIRNDETGLWQCPFC
QQDNFPELSEVWNHFDSGSCPGQAIGVRCRMDNGVTGFIPTKFLSDKVVKHPEERVKVGM
TVHCRIMKIDIEKLSVDLTCRTSDLSDKNNEWKLPKDTYYDFDTETEDVKQEEEAKKKQQ
RTTYIKRVIAHPSFHNINFKQAEKMMESMDQGDVIIRPSSKGENHLTVTWKVADGIYQHI
DVREEGKENAFSLGHTLWINTEEFEDLDEITARYVQPMAAFARDLLGHKYFQECNGGDRK
KMEEVLVKSKKEKPTFIPYYVSACRELPGKFLLGYQPRGKPRVEFVTVTPEGFRYRGQIF
PTVNGLFRWFKDHFQEPVAGITPSSSSRTRTPASVNATPANINIADLTRAVNALPQNMTS
QMFSAIAAVTGQGQNPNTTPAGWASSQYGYTGGSSGGGGSSSAYHVFATPAQQPIATPLL
TPSYSYTTPTPSQQQTITTPQYPSSTPQSSHGHGHRPSSSTPSSTSSSRHHRTPTPKATS
HTAVDWGKMAEQWLQEKEAERKKTRPRMTPRPSPSPMIESTPMSLAGDATPLLDEMDR
NT seq
5217 nt
NT seq
+upstream
nt +downstream
nt
atggatttcatcgagagggaagcagaggagtctgaggaggaatttgggtgtccagaggac
acagagaaaaaggcactgaagcatgctgcagcaaatgatgatgaggaggaggaagaggag
aatacagaggatcaagatgcagatggaaacctctgtggtctgattgatgatggtgtggag
gaaggggaaggggaggaagaggatgaggaagaagggaataaagataaagaaggtgatagt
gactctggggaggaaattggacaccgtaagaggaagagaagctttgacgaccgcttggat
gatgatgatattgatctcattgaggagaatttgggagtaaaagtgaaaaggcaaaagttc
cgtcgtttgcgagacatgtcggatgatgaggatgaggagggagatgaagatgtcagggag
gcccatgagaaggacatgatagcggatgagatcttcatggggacgggagcggatgagggt
gaggcattggatgtgcctttgcatcccggggaggatgaggaggaggacgatgaagagtct
gatatcgatgactttattgtggatgatgacggacagcccttgaaaaaacccaagtggagg
aagaagctgccaggatatacagatgcagcccttcaggaggcccaagagatattcggaggg
gactttgactttgccgagtttgacactgaagcctatgaagatgcagaggaggaggaggag
gatgcagatgaagagtcatgggaccggcccaagaagcaggccaagaagagggtgggtcga
cgcagtatctttgagatctatgagcctagcgagctggagagcagtcacatgacggaccag
gacaacgagatccgctccactgacatgccagagaggttccagttacgctccactcgtgtg
aagccagcagaagatgatgagctggaacaggaggctgagtggatctataggaatgccttc
tctactctcaccatctccatgcaggagaacgcagactatttggacagaggtccaaccact
actttcagcagaaaaggccccagcaccatccagaagattaaagaggctttgaatttcatg
agaaaccaacactttgaggttccgtttatagcattctacaggaaagagtatgtggagcct
gaactcaatatcaatgatctgtggaaggtttggcagtgggatgagaagtggacccagctg
aaaacccgcaaacagaacctaagacgcctgttccagaagatgcagggataccagtttgaa
cagatctcagctgacccagataagccactggctgatggcattcgaccactagacacttca
gatttagagaggttgaaggatgtccagtctagtgatgaactgggcgacgtctacaaccat
ttcctgctgtactatggccgagatattccaaagatgcagaatgcagccaggtccagcaag
aaaaagatgaagaagatcaaagtggatgaagatggtaatgagcaggaagtagaggaggag
gaagaggaagaagaggagcagtcaaaggggccggacctgaagcttgcatctcgcagggat
atgtacagcatctgccagtgtgcaggactggatggcctggccaagaagtttggtctgact
ccagagcagtttggagaaaacctacgtgacagttaccagcgtcacgagacggagcagttt
cctgctgagcccatggagttggctaaggactacatctgcagccagttcagcacagcggag
gcagtactggaggggactcgctacatggtcgccatgcagatcgcccgggaacctctagtc
agacatgtgctccgacagacgttccaggaaagagccaagatcaacatcaaacccaccaag
aagggaaagaaggatgtggatgaggcccattatggttactcatttaagtatctgaaaaac
aagcctgtaaaggagctgaatggagaccagttcctcaagatgttccaggcagaggaagag
ggcctgctcaccataaacatctgtattgacctgattggagtgaaggggtacggaggtgac
caggcgtactatgaagagataaagcagttttactacagagatgagttcagccaccaggtt
caggagtggaacagacagcgcactctggccattgaacgatccctcaaacagttcctttac
ccgcagatggcgaaagagctgaagaacaaacttattgcagaagcaaaggagaacatcatt
aaggcctgcagcaggaagctgtataactggctgaaggtggcgccctatcggcctgaccaa
caagtggaggaggaggatgaggagctcatgtctgaggcccacggcaaagggatccgcgtg
ctgggagtggccttctcatccagcagagacaccccagtgttctgtgccctggtgaatggt
gacggagaggtgggggatttcctcaggcttccttacttcctgaagaggaggaacgcatgg
agggaggatgaaagggagaaaaagatccacgatattgaaaccctgaagaagtttctgaac
agcaagaagcctcacatcatcgctatagctggggagaacagggacgcccagatggtgatt
gaggacattaaacgcactgccagtgagctggagcaggagtcctccttccccaccatcggg
gtggagctggttgataatgaactggccatgctctacatgaacagcaagaagtcagaggca
gatttccgggactacccccctctcctgagacaggctgtgtctgtggccaggaagatccag
gaccccctggtggagtatgctcaggtgtgcagcagtgacgaagacatcctctgcctcaag
ttacaccctttgcaggagcatgtagtgaaggaggacctgctgaatgctctgtactgtgag
ttcatcaaccgggtgaatgaagtgggtgtggatgtgaaccgggccatggcccacccctac
acccagagcctggtgcagtacgtctgtggcctggggcccaggaagggatcccacctgctc
aggatcctgaagcaaaataacactcgcctggaaaaccgcactcagctggtcaccatgtgt
cacatgggccccaaggtcttcatcaactgtgctggtttcatcaagattgacacagcttca
cttggagacagtactgactcctatattgaggttctggacgggtcgcgggtgcacccagag
acctacgagtgggcaaggaagatggccgtggatgccctggagtacgatgagtcagcggag
gacgccaacccagccggagcactggaggagatcctggaaaacccagagcggctcaaagac
ctagacttggacgcctttgctgaggagctggaaagacagggctatggtaacaagggcatc
accctgtatgatatccgtgctgagctgagctgcaggtacaaagacctgaggtccacctac
agaggacctaacacagaggagatcttcaacctgctcaccaaggagacaccagagaccttt
tacatcggtaaactgatcaccagtgtggtgacaggcattgctcaccggcgcccccagggg
gagagttatgaccaggccataaggaatgatgagacaggtctgtggcagtgtcctttctgt
cagcaggataacttccctgagctcagcgaggtgtggaatcattttgacagtggctcctgc
cctggccaagctattggggtccgctgtcgcatggacaacggagtcaccggctttatccct
accaagttcctcagtgacaaagtggtcaagcaccctgaagaaagggttaaggtgggcatg
acagtgcactgcaggatcatgaagattgacattgagaagctcagtgtggatctgacctgt
cggacgtcagacctgtcggataagaacaatgagtggaagcttcccaaggacacctactac
gactttgacactgagacagaggatgtgaagcaggaggaggaggccaagaagaaacagcag
agaacaacctacatcaagagggtgatagcccacccatcgttccataacatcaacttcaag
caggcagagaagatgatggagtccatggaccagggagatgtgatcatcaggcccagcagt
aagggagagaaccacctgactgttacttggaaggttgctgatggcatctaccagcatatt
gacgtacgagaggagggcaaggagaatgccttcagcctgggacataccctgtggatcaac
actgaggaatttgaagatctggatgaaatcacagccagatacgttcaaccaatggctgcg
tttgctcgcgatctacttggtcacaagtattttcaagaatgcaatggtggagaccgaaag
aaaatggaggaggtcttggtgaaaagcaagaaggaaaagcctacattcatcccctactat
gtgtctgcctgtagagagctgccagggaagtttctgctcggttaccagccccgcggaaaa
ccaagggttgagtttgtgactgtcacgcctgaggggttcagatacagaggccagattttt
cccacagtcaatggactcttccgctggttcaaagaccatttccaggagccagtggcaggg
attactcccagcagcagcagtagaacacgaaccccagcctctgtcaatgccacgccagcc
aatattaacattgcagatctgactcgtgcagtgaacgccctccctcagaatatgacctct
cagatgttcagtgccattgccgcagtaacgggccagggccagaaccccaacaccacacca
gccggatgggcatccagccagtacggctatactggtggcagcagcggcggaggggggagc
agcagcgcctatcatgtgtttgccacaccagctcagcagccgattgctactccccttctg
acgcccagctattcatacaccacccccacccccagccagcagcagactatcaccactccc
cagtaccccagcagcactccccagtcctcacacggacatggacaccgcccttcctcctcc
acaccatcatcaacatcctcctcccgccaccacaggacaccaacaccaaaggcaacttcc
cacacagcagtggactggggaaagatggccgagcagtggctccaggagaaagaggcagag
cgcaagaagacgaggcccagaatgaccccacgaccttctcccagccccatgatcgagagc
acgcccatgtccctcgctggagacgccacaccgctgctggatgagatggatcgctag
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integrated database retrieval system
