Oncorhynchus nerka (sockeye salmon): 115136817
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Entry
115136817 CDS
T07952
Name
(RefSeq) scavenger receptor class F member 1-like isoform X1
KO
K24318
scavenger receptor class F member 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
115136817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115136817
Membrane trafficking [BR:
one04131
]
Endocytosis
Phagocytosis
Scavenger receptors
115136817
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_Teneurin
EGF_TEN
EGF_2
EGF_PEAR1L
Motif
Other DBs
NCBI-GeneID:
115136817
NCBI-ProteinID:
XP_029528492
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Position
LG11:complement(12429292..12435900)
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AA seq
955 aa
AA seq
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MGQFLTGLGLLLCCSLSSPQRLAPSGRNVCQDPRNPSTLVCCTGWRQQREECTLPVCDGE
QACQQDEVCVYPGICRCRPGYYGAHCKTRCPPEFWAPDCRELCKCHPHGRCDPITGKCTC
LSNRWGPLCQNTCKCGRHGHCHPVHGNCTCDEGWWTPTCTKQCQCYPGTSTCDPLTGRFV
GRCQCAPGYWGQKCSLRCSCYTSSCQQKTGACECQNGWWSPTCDRRCNCDLEHSECNAVS
GECVCQPGYKGAFCNQPCGPGEYGSGCKLSCGHCEGGQSCSVVDGVCTACEPGWNGTHCD
RLCPHGYHGNHCQEACPRCRNGEPCDPRTGACSRCDPGWTKPRCDEPCSNSTFGDACRSL
CSPCFHGHCDHVTGSCVCGPGFQGRSCNITCPDQLYGFNCSSVCDCGEGTACHPATGACP
YSGHRALITGLLVPLLLVLLGLVCCCCCCGGPTDGKDRVAVGDGGTSVRMKHHVYNVLAN
VSSAVPCISVWSSGLPRVTVSHHDPELTFNHSFIEPPSSGWVTEGSFFDSDEETGVVLYC
VPPREDIPAVAGGEFQEFQHEMSSKCNMFPDPSAFSISAEDMSLPFGIPRTSSNAKSKCP
SVSFAEGTRFSPKERRGSAQDLTPGVPRTKHKSPWGVLMLSALQAQGGNASEGEETEVGV
DGCGGGTGPLEDPESSGEAGDPDVDRWTATPTRAMSTLQVPGAVVGRTISNAAVPRKGGQ
TPGSTSDGQQAEMDKVTTVYVTVGKAGVGRPLSKLELPSLEGPVQAMLRRLGSLQRHKDQ
EVGTKPKGKSPGAEGITKPPRRKLGTRASVWEQGAPPPSGVEGAVGKGVSMRKPSRRKQH
AHHSSPAVMGNTDAGTNTQPPPEDTPATVTPTRPLSSILKSVPEVAGSEVRGERSGVRRE
NGDPGMQTDSGYRTIGPAGFVMDAVSLSEVIANEGVVAGVDDGPNLYENVMIMHS
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgggccagtttctgacgggtctaggactactgctctgctgttccctctcctcccctcag
agactggctccctcagggagaaacgtctgccaggaccccaggaatccttccactcttgtc
tgttgcactggatggagacaacagagagaagagtgtactttacctgtgtgtgatggtgaa
caggcctgtcagcaggatgaggtgtgtgtatacccgggcatctgtcgctgtcggcctggc
tactatggagcccactgcaagacacgctgccctccagagttctgggcaccggactgccgt
gagctgtgcaagtgccaccctcacgggcgctgtgacccgatcacgggcaagtgtacgtgc
ctctccaaccgctgggggccactctgccagaacacctgcaaatgtggccgtcatggacac
tgccaccccgtacacggcaactgcacctgcgacgagggctggtggacacccacctgtacc
aagcagtgccagtgctacccaggcacctccacctgcgacccactgaccggcaggtttgtt
ggcaggtgtcagtgtgccccgggttactggggtcagaagtgcagtcttcgatgtagctgc
tacacatcatcctgccaacagaagacgggggcgtgcgaatgccagaacgggtggtggagt
ccgacgtgtgaccgccgctgtaactgtgacctggagcacagcgagtgtaatgccgtcagc
ggggagtgtgtatgtcagcctgggtacaagggagccttctgtaaccaaccgtgtggacct
ggggagtatggcagtggctgtaaactgagctgtggccactgtgaaggaggccagtcgtgc
tctgtggttgatggtgtctgtacggcctgtgagcctgggtggaatggcacacactgtgac
cgtctgtgcccgcatggttaccatggaaaccactgccaggaggcatgcccacgctgcagg
aacggtgaaccatgtgaccccaggacgggggcgtgttcacgatgtgacccaggatggacc
aaacccaggtgtgacgagccgtgctctaacagtacattcggggatgcctgccgctccctg
tgcagcccctgtttccatggccactgtgatcacgtgacaggaagttgtgtctgtgggcct
gggttccagggacggagttgtaacatcacctgtccagatcagctgtatggctttaactgt
tcctctgtctgtgactgtggagagggaaccgcctgtcacccagcaacgggggcgtgtcca
tacagtggtcacagggctctgatcactggtctcctggtccctctgctcttggtgctgctg
ggtctggtctgctgctgctgctgctgtggaggacctactgacggcaaagacagggtagca
gtgggtgacggtggtacctctgtccgtatgaagcatcatgtgtataacgtcctggccaac
gtgagctctgctgtaccctgtatctctgtctggtcctctgggctacccagagtcacagtg
tcacaccacgaccctgagctgacgttcaaccacagcttcatagagcctccctcctcaggc
tgggtgacggagggatccttcttcgacagtgatgaggagaccggagtggtgctctactgt
gtcccccccagagaagacatccctgcagtggcgggcggtgagttccaggagttccagcac
gagatgagttctaagtgtaacatgttccccgacccctctgccttcagtattagtgcagaa
gacatgtccctcccctttggcatcccccgcacctccagcaacgccaagtccaaatgcccc
tccgtctccttcgccgaaggcaccaggttcagtcccaaggagcgccgaggctctgcccaa
gatttgacacccggggtcccccgcaccaaacacaagtccccctggggggtcttgatgctg
tcagccctccaggcccagggagggaatgcctcagagggggaagagacggaggtgggggtg
gatgggtgtggaggtgggactggaccattggaagacccagaatccagtggtgaagcaggg
gaccccgatgtggacaggtggacagctaccccgacccgagccatgtctaccctgcaggtg
cctggagcagtggtaggacgcaccatatccaacgctgctgttcccagaaagggagggcaa
acaccagggtccacatccgatggccagcaggcagagatggacaaagtgaccacagtgtat
gtgacagtggggaaggcgggggtggggaggcccctgtctaaactagagctccccagcttg
gagggcccagtacaggccatgctacgcaggctaggcagcctccagagacacaaagaccag
gaggtgggaactaagcccaaggggaagagcccgggggcggaggggatcaccaagcccccc
aggaggaagctggggactagggccagtgtgtgggagcagggggctcccccaccctcgggg
gtggagggtgctgtagggaaaggcgtatctatgagaaaacccagtaggaggaaacagcac
gcccaccatagctcccctgctgtcatgggaaacactgacgctggcactaacactcaaccc
ccaccagaggacacccctgccaccgttacgcccacgaggcccctgtcctccattttgaaa
agcgtgccagaggtcgctgggtcagaggttaggggtgaaaggtcaggggtaaggcgagag
aacggcgaccctgggatgcagactgatagtggatatcgaacaatcgggccagctggattt
gtaatggacgctgttagtctgagtgaagtcatcgccaatgaaggagtggtggctggtgtg
gacgatggacctaacctttatgagaacgtgatgattatgcattcctaa
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