KEGG   Oncorhynchus nerka (sockeye salmon): 115136848
Entry
115136848         CDS       T07952                                 
Symbol
polr2d
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03020  RNA polymerase
one03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    115136848 (polr2d)
  09124 Replication and repair
   03420 Nucleotide excision repair
    115136848 (polr2d)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:one03021]
    115136848 (polr2d)
   03400 DNA repair and recombination proteins [BR:one03400]
    115136848 (polr2d)
Transcription machinery [BR:one03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     115136848 (polr2d)
DNA repair and recombination proteins [BR:one03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      115136848 (polr2d)
SSDB
Motif
Pfam: RNA_pol_Rpb4 Tfb4 Rop
Other DBs
NCBI-GeneID: 115136848
NCBI-ProteinID: XP_029528551
LinkDB
Position
LG11:14206208..14208757
AA seq 143 aa
MASSGGSTTTVGDIEEDASQLLFPKEFENAETLLNSEVHMLLEHRKQQNESAEDEQELSE
VFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSVE
GRFEDEELQQILDDIQTKRSFQY
NT seq 432 nt   +upstreamnt  +downstreamnt
atggcgtccagtggcggttcaacaacaactgtcggagatattgaggaggacgcgtctcag
ctacttttccccaaagagttcgagaacgcggagacacttctaaactctgaggtacacatg
cttctggagcatcgcaagcagcagaacgagagtgcagaggacgaacaagagctatcggag
gtcttcatgaaaactctgaattatactgcacgtttcagccgtttcaaaaacagagaaact
atcgccagtgttcgcagcttgctcttgcagaagaagctgcataagtttgagttagccagt
ttggccaacctttgtccagaagcagcggaggaggccaaagccctcatccctagtgttgag
gggcggtttgaggatgaggagctgcagcaaatccttgatgacattcagaccaagagaagt
ttccagtactga

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