Oncorhynchus nerka (sockeye salmon): 115137014
Help
Entry
115137014 CDS
T07952
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
115137014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115137014
03019 Messenger RNA biogenesis [BR:
one03019
]
115137014
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
115137014
RNA polymerase I system
115137014
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
115137014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW5_SPT5
KOW2_Spt5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
DUF150_C
Ribonuc_P_40
Arabino_trans_N
Motif
Other DBs
NCBI-GeneID:
115137014
NCBI-ProteinID:
XP_029528853
LinkDB
All DBs
Position
LG11:21349207..21375186
Genome browser
AA seq
1085 aa
AA seq
DB search
MSDSEDSDFSDNQSEQSSEAEEVDKNEAEEDGQASLSGSDKAAEEEGEDLADEEYDEEEE
EDDDDRPRKKPRHGGFILDEADVDDEYEDEDPWEEGAEDILEKVNEEAEVSNIDHVVLDE
DNSGSRRLQNLWRDSREEALGEYYMRKYAKQSGNDFPGGSEELSDDITQQQLLPGVKDPN
LWTVKCKIGEERATAIALMRKFIAYQFTETPLQIKSVVAPEHVKGYIYVESYKQTHVKAA
IDGIGNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEP
SQNTISLKMIPRIDLDRIKARMSMKDWFAKRKKFKRPTQRLFDAEKIRSLGGDVSHDGDF
MIFEANRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTETAGKEREH
NLQAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHV
KVIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGE
LVQLDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVKD
IVKVIDGPHSGREGEIRHIFRGFAFLHCKKLVENGGMFVCKTRHVVLAGGSKPRDVTNFT
VGGFAPMSPRISSPMHPGGGGQQQRGGGGGGQMGRGRGRRDNDLIGQTVRISQGPYKGYI
GVVKDATESTARVELHSTCQTISVDRQRLTTMGAKRHGGMTSTHGRTPMYGSQTPMYGTG
SRTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRADDDYEFGYD
DEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTEQYSPYAAPSPQGS
YQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPG
GYNPHTPGSNIDQTSCDWVTTDILVRVKDTFLDSQVVNQTGIIRSVTGGMCSVFLQDTEK
VVSISSEHLEPVTPTKNNKVKVILGEDREATGILLSIDGDDGIVRMELDDQLKILNLRFL
GKLEL
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagtgaggacagcgacttctctgacaaccagagtgaacaaagcagcgaagcc
gaggaggtggacaaaaatgaggcagaggaagatgggcaggcaagtttatctggcagtgat
aaggcagcagaagaggaaggggaagacttggcagatgaggagtatgacgaagaggaggaa
gaggacgatgatgaccgtcccagaaagaaacccaggcatggaggtttcatcttggatgaa
gccgatgtggacgatgagtatgaagatgaagacccgtgggaggaaggtgctgaggatatt
ttggagaaagttaacgaggaagctgaggtgtccaacattgaccatgtggtcctggatgag
gataactctggctcccgcaggctgcagaacctctggagagattccagagaggaggccttg
ggggaatattacatgaggaaatatgccaagcaatctggaaatgattttcccgggggttct
gaggaactgtctgatgacatcacccagcagcagctgctccctggtgtcaaggatcctaat
ctttggacagtcaagtgtaagattggggaagagagagcaactgccattgcgttgatgagg
aaattcattgcctatcaattcacagaaacgcccctccaaatcaagtcggtagtggctccc
gaacatgtcaaaggttacatctatgtagagtcgtacaagcagactcacgtcaaagctgca
attgacggaataggcaacctgaggatgggcttctggaaccagcagatggttcccatcaag
gagatgacagacgtcctcaaggtggtcaaagaggtgaccaacctcaagcccaagtcctgg
gtccgactcaagagaggcctatacaaagatgacatcgcccaggtggactatgtggagccc
agtcaaaacacgatatcactgaagatgattcccaggatagatttggacagaatcaaggcc
cggatgagcatgaaagactggtttgcaaagcggaagaagttcaagagaccaacccagaga
ctcttcgatgcagaaaagatcaggtcacttggtggggatgtcagccatgatggagacttc
atgatatttgaagctaaccgctacagccgcaaagggttcctcttcaaaagctttgccatg
tctgctgtgatcactgaaggagtgaaacccactctgtcggagctggagaagtttgaggac
cagccagaaggcattgatctggaggtggtgactgaaaccgcaggtaaagagcgtgagcac
aacctccaggccggggacaatgtggaggtatgtgaaggggagctgatcaacttgcagggc
aaaatcctgagtgtggatggcaacaagatcaccatcatgcccaagcatgaggacctcaag
gatcctctggagttcccggcccacgagttgaggaagtacttccgtatgggtgaccacgtc
aaggtgatagcaggccgctacgagggcgacaccggcctcatcgtacgtgtggaggagaac
tttgtcatcctcttctctgacctcaccatgcacgagttgaaggtcctgcccagggacttg
cagttgtgctctgagacggcatcaggggtagatgccgggggccagcacgagtggggggag
ctggtccaactggacccccagaccgtgggagttattgtcaggctggagagggagacattc
caggtcctcaacatgcatggcaaggtgctgacagtgcgtcaccaggcagtgaatcgacgg
aaagacaaccgctttgccgtggcactggactctgagcagaacaatatccacgtcaaagac
atcgtcaaggtcatcgacgggccacactcggggcgtgagggggagatccgccacattttc
cgaggctttgccttcttgcactgcaagaagctggtggagaacgggggcatgtttgtctgc
aagacacgccacgtggtgctggccgggggctccaagccccgagatgtcaccaacttcact
gtgggaggcttcgcgcctatgagtccacgcatcagcagccctatgcatccaggtggtggt
ggccagcagcagaggggcggtggaggtggaggacagatggggcgtggccggggcagaagg
gacaacgacctgattggacagaccgtccgcatctcccagggaccatacaaggggtatatt
ggagtggtgaaggacgccacagagtcgacagccagagtggaactgcactcgacatgccag
accatctctgtggaccgacagcgtctcaccacaatgggagcgaagcggcatggaggaatg
acttccactcacggacgcacccccatgtacggttcccagacccccatgtacgggacaggc
tcccgtacccctatgtacggctctcagacccccttacacgatgggagccgtactcctcac
tacggctcgcagacgccgctacatgatgggagcaggacgccggggcagagcggagcgtgg
gaccccaacaaccccaacacaccgtccagggcggatgacgactatgagtttggttatgat
gacgagccctccccgtcccctcagggctacgggggcacgcctaacccccagacccccggc
tacccagaggtgccgtcaccccaggtcaacccccagtacaacccccagacaccaggcacc
ccagccatgtacaacacagaacagtactcgccgtacgctgccccctccccacagggctcg
taccagcccagccccagtcctcagagttaccatcaggtggcacccagcccagtgggctac
cagaacacacactcaccagccagctaccaccccaccccctcacccatggcatatcaggcc
agtccgagccccagcccggtaggctacagccccatgacccccggcgccccctccccgggc
ggctacaatccccacacccccggctccaacatcgaccagacctcttgcgactgggtcacc
accgacatcctggtgcgcgttaaagacaccttcctggacagccaggtggttaaccagaca
ggcatcattcgcagtgtcacgggtggcatgtgctccgtcttcctccaggacacagagaag
gtggtgagcatctccagtgaacacctggagcctgtcaccccaactaagaacaacaaggtg
aaggtgattctaggggaggaccgcgaggccacggggatcctactgagtatcgacggggac
gacggcatcgtaaggatggagctggatgaccagctgaagattctcaacctccgcttcctt
ggcaagctggagctctga
DBGET
integrated database retrieval system
