Oncorhynchus nerka (sockeye salmon): 115137034
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Entry
115137034 CDS
T07952
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B-like isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115137034
Enzymes [BR:
one01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115137034
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
115137034
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Sina_ZnF
Prok-RING_4
PDZ_Tricorn
zf-rbx1
zf-TRAF
U-box
TRAF3_RING
RING_XB3-XBAT31
zf-RING_6
TRAF2_zf
Motif
Other DBs
NCBI-GeneID:
115137034
NCBI-ProteinID:
XP_029528893
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Position
LG2:27113894..27244255
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AA seq
1054 aa
AA seq
DB search
MGFELDRFKGAVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQSSCPVKCQRIS
TKELNHVLPLKNLIMKLDIKCDNHARGCEKVVKLQHLAEHAEMCDYSPAKCRNKGCNEVL
NLKDMDAHMRESCDCRPVGICENGCGLMLTHKEQKLDTHCCLKALKAHNSALHVKVVSLD
KEFKKQSLKSSKREKSLLAQLSAVHNELQMTALKYQKKFTENSARIDSLTKTLAPPCKGG
ETKNITAILHREGGSLGFNIVGGRPCADDHDGPSNEGIFVSKIVENGPADKEGGLQIHDR
IMEVNGKDLSKATHDQAVEAFRTAKEPIMVQVLRRAPRPKPSSPASDTQVVDISTQTDIT
FQHIMALTKLPAAAPTVAVLEQYLMPEEHSPGHEYFDPNDFLEGMQQEMEREELEYEEVD
LYRANIQDKLGLTVCYRTDDEDETGIYVSEIDPNSIAAKDGRIREGDRIIQINGIEIQNR
EDAVALLTSEENQNVCLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTAS
MLQQKKREEDGGTTDTATLLSNHHEKDSGVGRTDESTRNDESSEQENLGDDQTAASNTLG
SCSRRKLAYSQDTLGSIDLPFSGESFISADYDHADFLGIPADECERFRELLELKCQVRSA
GGPQELYCQSAGARGAEEGVDKELELLNEELRSIELECLNIVRAHKMQQLREQYRESWML
HNSGFHNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRR
GAENQGESGASSSAGPNSRILKPLLSPVQEAGGPSRIRPSSSKESDCGLQAEGKERKLGE
STHKLAQPRSLYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSLVSRGDPVNPED
MLDPKMEWKVKIRSDGTRYITKRPVRDKLLKERALRIHEERSGMTTDDDAISELKMGRYW
SKGERKQHAVRAKEQRQRREFMKQSRADCLKEQASLDDDKKEPNIIELSHKKMMKKRNKK
IFDNWMTIQELLTHGAKSPDGTRVYNSLLSVTTV
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgggatttgagttggatcggtttaaaggggctgtggacccagattttaaatgtaatttg
tgtaataaagttctagaagacccgctcactactccgtgtggtcacgtcttctgcgctggc
tgtgtgctgccttgggttgtccagcaaagcagctgccccgtcaaatgtcaaaggatctcc
acgaaagagctgaaccacgttctccctctgaaaaacctgattatgaagctggacataaag
tgtgacaatcatgccagaggctgtgaaaaagtggtaaagctgcaacatctggcagagcac
gccgagatgtgcgattactcgccggcaaaatgcaggaataaaggatgcaacgaggtgctc
aatctgaaggacatggatgcacatatgcgcgaatcgtgtgattgcagaccggtcgggata
tgcgaaaatggatgtggcttgatgctcacccacaaggagcaaaaactagacacccattgc
tgtttgaaagccctgaaagcacacaacagtgcattgcacgtgaaggtggtcagcttggac
aaagagttcaagaagcaatctttgaaatcgagcaaaagagagaaatctcttcttgctcaa
ctctctgcggtgcataatgagctacaaatgacagcactgaagtatcagaagaaattcact
gaaaacagtgcaaggatcgactcgctgactaagacccttgcccccccgtgcaagggtggg
gagaccaaaaacatcacagccatccttcatcgggagggcggttctctgggcttcaacatc
gtgggaggacgaccatgcgcggacgaccatgatggcccttcgaatgaagggatctttgta
tctaagattgttgagaacggaccagcagacaaggagggaggccttcagatccacgacaga
ataatggaggtgaatgggaaggatctgtccaaggccacccatgaccaggcagtggaggcc
ttccgcacggccaaggagcccatcatggtccaggtgcttcgccgggccccccgccccaaa
ccctccagccctgcctcagacacccaggtggtggacatcagcacccagacagacatcacc
ttccaacacatcatggccctcaccaagctgcctgccgccgcccccaccgtggctgtgctg
gagcaatacctcatgcccgaggagcattcccccgggcacgagtactttgaccccaatgat
ttcctggagggtatgcagcaggagatggagcgagaggagctggaatatgaggaagtggat
ttgtacagagccaacatccaggacaagcttgggttgaccgtctgctacaggactgatgat
gaggacgagactgggatctacgtcagtgagattgacccaaacagcatcgctgcaaaggat
ggcaggatcagagagggagatagaattatccagatcaacgggattgagatccagaaccgg
gaggatgctgtggctctgttgaccagtgaggagaatcagaatgtgtgtctactggtggcc
agaccagagatccagctggatgagggctggatggatgatgacaggaatgacttcctggat
gacctccacatggacatgctggagcagcagcaccaccaggccatgcagttcaccgccagc
atgctgcagcagaagaagcgtgaggaggatggtggaacgactgacacagccaccctgttg
tccaatcaccacgagaaagacagcggggtgggccgcaccgacgagagcacgcgcaacgac
gagagctctgagcaggagaacctgggggacgaccagactgcggcctccaacacgctgggc
agctgcagccgcaggaagctggcctacagccaggacaccctgggaagcattgacctgccc
ttcagtggtgagtccttcatctccgcagactacgaccatgctgacttcttgggtatcccc
gccgacgagtgtgagcgcttccgagagctcctggagctgaagtgccaggtgaggagtgcg
gggggcccccaggagctgtattgccagagtgcaggggctagaggtgccgaagagggggtg
gacaaggagctggaactgctgaacgaggagctgcgcagcattgagctggagtgcctcaac
atcgtccgggcccacaagatgcagcagctgagggagcagtaccgcgagtcctggatgctg
cacaacagcggcttccacaactacaacaccagcatcgacgcgcgccgccatgagctctcc
gacatcacagagctgcccgagaagtcagacaaggacagctccagcgcctacaacaccggt
gagagctgccgcagcacccccctcaccctagagctgtccccagacaactccctccgcagg
ggggcagagaaccagggcgagtctggggcctccagcagcgcagggcccaacagcaggatc
ctcaagcctctgctgtctcctgtccaggaggccggtggccctagcagaatcaggccttcc
tcatctaaggagtctgactgtggcctgcaggcggaggggaaggagcgtaagctgggagag
tctactcacaagctggcccagccccgctccctgtacaaacacgcccacatcccggcccac
gcccagcactaccaaagctacatgcagctgatccagcagaagtctgccgtggagtacgcc
cagagccagatgagcctggtcagtctggtcagccgcggtgaccccgtgaaccccgaagac
atgctcgatcccaagatggagtggaaggtgaagatccgcagcgacggcacgcgctacatc
accaagaggcccgtcagggacaagctgctgaaggagcgcgccctgcgtatccacgaggag
cgcagcggcatgaccacagacgacgacgccatcagcgagctgaagatggggcggtactgg
agcaagggggagaggaagcagcacgcggtgcgcgccaaggagcagaggcagcggcgcgag
ttcatgaagcagagccgcgccgactgcctgaaggaacaggccagcctggacgatgacaag
aaggagcccaacatcattgaactgagccacaaaaagatgatgaaaaagaggaacaagaaa
atctttgacaattggatgactatccaggaacttttgacccacggtgctaagtcgcctgac
ggcacgcgagtgtacaactccctcctgtccgtcaccacagtgtag
DBGET
integrated database retrieval system
